Wall clock time and date at job start Mon Mar 30 2020 02:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38267 * 119.98377 * 2 1 4 4 C 1.38222 * 120.05308 * 180.02562 * 3 2 1 5 5 C 1.38224 * 120.02081 * 359.96970 * 4 3 2 6 6 C 1.50698 * 120.00875 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47122 * 145.00786 * 6 5 4 8 8 O 1.42905 * 109.47321 * 25.00687 * 6 5 4 9 9 C 1.50697 * 109.47576 * 265.00441 * 6 5 4 10 10 H 1.08001 * 119.99890 * 0.02562 * 9 6 5 11 11 C 1.37876 * 120.00428 * 180.02562 * 9 6 5 12 12 N 1.31517 * 120.00362 * 180.02562 * 11 9 6 13 13 Si 1.86804 * 119.99850 * 359.97438 * 11 9 6 14 14 H 1.48504 * 109.47052 * 89.99717 * 13 11 9 15 15 H 1.48495 * 109.47307 * 209.99656 * 13 11 9 16 16 H 1.48500 * 109.47143 * 330.00164 * 13 11 9 17 17 C 1.38432 * 119.97777 * 0.26466 * 5 4 3 18 18 F 1.35101 * 120.02865 * 179.72053 * 17 5 4 19 19 C 1.38171 * 119.98884 * 179.97438 * 2 1 3 20 20 H 1.08993 * 109.47448 * 90.00380 * 1 2 3 21 21 H 1.09010 * 109.46913 * 210.00041 * 1 2 3 22 22 H 1.08994 * 109.47589 * 329.99598 * 1 2 3 23 23 H 1.07998 * 119.97521 * 359.97438 * 3 2 1 24 24 H 1.08000 * 119.99041 * 180.02562 * 4 3 2 25 25 H 0.96696 * 114.00036 * 299.99741 * 8 6 5 26 26 H 0.96991 * 120.00258 * 180.02562 * 12 11 9 27 27 H 1.07999 * 120.01503 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1976 0.0000 4 6 3.5802 1.1993 -0.0005 5 6 4.2732 0.0033 -0.0004 6 6 5.7802 0.0055 -0.0016 7 1 6.1452 -0.8356 0.5879 8 8 6.2553 1.2274 0.5669 9 6 6.2817 -0.1183 -1.4173 10 1 5.5794 -0.1908 -2.2345 11 6 7.6371 -0.1390 -1.6692 12 7 8.0748 -0.2465 -2.9048 13 14 8.8519 -0.0129 -0.2557 14 1 9.1753 -1.3741 0.2419 15 1 10.0941 0.6495 -0.7282 16 1 8.2519 0.7861 0.8428 17 6 3.5825 -1.1963 -0.0053 18 9 4.2588 -2.3659 -0.0110 19 6 2.1976 -1.1967 0.0005 20 1 -0.3634 -0.0001 -1.0276 21 1 -0.3633 -0.8901 0.5139 22 1 -0.3634 0.8899 0.5139 23 1 1.6573 2.1325 -0.0004 24 1 4.1189 2.1353 -0.0001 25 1 5.9686 2.0197 0.0924 26 1 9.0282 -0.2614 -3.0820 27 1 1.6577 -2.1321 0.0014 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606254759.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:20 Heat of formation + Delta-G solvation = -98.778260 kcal Electronic energy + Delta-G solvation = -13601.434934 eV Core-core repulsion = 11044.563989 eV Total energy + Delta-G solvation = -2556.870945 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.78643 -40.30910 -37.86518 -34.52007 -33.56903 -31.44948 -30.06618 -27.40029 -24.17129 -23.59553 -21.72601 -19.61701 -18.17892 -17.54808 -17.19237 -16.86995 -16.47710 -15.52047 -15.08683 -14.93385 -14.75914 -14.37170 -14.22965 -13.88802 -13.20088 -13.04021 -12.87443 -12.70331 -12.31201 -12.12946 -11.78821 -11.30986 -10.89614 -10.43339 -9.75017 -9.29846 -8.40767 -6.57066 0.29609 0.35350 1.37032 1.40785 1.69833 2.38867 2.69511 2.94959 3.42877 3.85047 3.86785 3.92954 4.13706 4.34972 4.43789 4.74180 4.87904 4.91793 4.97156 5.19403 5.30466 5.32017 5.37214 5.59935 5.62353 6.00583 6.08487 6.53441 7.04911 7.23334 8.73354 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.047921 B = 0.009733 C = 0.009219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.157978 B = 2876.053171 C = 3036.331370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.073 4.073 3 C -0.125 4.125 4 C -0.095 4.095 5 C -0.142 4.142 6 C 0.238 3.762 7 H 0.052 0.948 8 O -0.573 6.573 9 C -0.556 4.556 10 H 0.031 0.969 11 C 0.032 3.968 12 N -0.935 5.935 13 Si 0.937 3.063 14 H -0.286 1.286 15 H -0.288 1.288 16 H -0.203 1.203 17 C 0.069 3.931 18 F -0.156 7.156 19 C -0.161 4.161 20 H 0.081 0.919 21 H 0.077 0.923 22 H 0.088 0.912 23 H 0.162 0.838 24 H 0.143 0.857 25 H 0.371 0.629 26 H 0.270 0.730 27 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.869 3.246 7.871 16.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.074 4.074 3 C -0.142 4.142 4 C -0.112 4.112 5 C -0.143 4.143 6 C 0.180 3.820 7 H 0.070 0.930 8 O -0.381 6.381 9 C -0.593 4.593 10 H 0.049 0.951 11 C -0.168 4.168 12 N -0.573 5.573 13 Si 0.760 3.240 14 H -0.213 1.213 15 H -0.214 1.214 16 H -0.125 1.125 17 C 0.049 3.951 18 F -0.135 7.135 19 C -0.179 4.179 20 H 0.100 0.900 21 H 0.096 0.904 22 H 0.107 0.893 23 H 0.179 0.821 24 H 0.161 0.839 25 H 0.221 0.779 26 H 0.079 0.921 27 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -13.447 2.795 8.190 15.991 hybrid contribution 1.054 -0.352 -0.579 1.253 sum -12.394 2.443 7.611 14.748 Atomic orbital electron populations 1.20830 0.87547 1.04339 1.03497 1.20140 0.98210 0.91390 0.97618 1.21420 0.93024 0.99232 1.00555 1.21040 0.95094 0.96800 0.98315 1.20899 0.98072 0.93640 1.01696 1.18334 0.86531 0.85018 0.92146 0.93038 1.86642 1.76855 1.16529 1.58087 1.21513 0.92498 1.53076 0.92250 0.95107 1.25860 1.00546 0.92126 0.98297 1.70059 1.15545 1.49987 1.21741 0.86016 0.77112 0.79006 0.81883 1.21302 1.21437 1.12513 1.17958 0.91184 0.80660 1.05251 1.91412 1.81164 1.46738 1.94172 1.21211 0.90617 1.00970 1.05114 0.90026 0.90431 0.89342 0.82050 0.83907 0.77915 0.92129 0.83335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.70 10.01 71.24 0.71 -0.99 15 2 C -0.07 -1.89 5.88 -19.87 -0.12 -2.01 15 3 C -0.12 -3.30 9.70 22.27 0.22 -3.08 15 4 C -0.09 -3.21 9.30 22.26 0.21 -3.00 15 5 C -0.14 -6.05 5.01 -19.82 -0.10 -6.15 15 6 C 0.24 11.72 2.32 29.10 0.07 11.78 15 7 H 0.05 2.70 7.23 -2.39 -0.02 2.68 15 8 O -0.57 -25.43 9.80 -148.98 -1.46 -26.89 15 9 C -0.56 -32.63 9.33 25.60 0.24 -32.39 15 10 H 0.03 2.02 7.98 -2.91 -0.02 1.99 15 11 C 0.03 1.90 5.47 84.65 0.46 2.36 15 12 N -0.93 -59.10 13.96 21.45 0.30 -58.80 15 13 Si 0.94 45.94 26.99 68.60 1.85 47.79 15 14 H -0.29 -14.05 7.11 99.48 0.71 -13.34 15 15 H -0.29 -13.78 7.11 99.48 0.71 -13.07 15 16 H -0.20 -9.43 5.31 99.48 0.53 -8.90 15 17 C 0.07 2.82 7.24 22.38 0.16 2.98 15 18 F -0.16 -7.09 16.57 44.97 0.75 -6.34 15 19 C -0.16 -5.07 9.68 22.31 0.22 -4.85 15 20 H 0.08 1.19 8.14 -2.39 -0.02 1.17 15 21 H 0.08 1.08 8.09 -2.38 -0.02 1.06 15 22 H 0.09 1.07 8.08 -2.39 -0.02 1.05 15 23 H 0.16 2.96 8.06 -2.91 -0.02 2.94 15 24 H 0.14 4.26 6.41 -2.91 -0.02 4.24 15 25 H 0.37 14.04 7.32 -74.06 -0.54 13.50 15 26 H 0.27 15.90 8.31 -92.72 -0.77 15.13 15 27 H 0.15 3.89 8.06 -2.91 -0.02 3.87 15 Total: -1.00 -71.23 238.45 3.97 -67.26 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.47 Total: 12.32 kcal Atomic # 6 Polarization: -37.41 SS G_CDS: 2.07 Total: -35.35 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: 0.30 Total: -58.80 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -1.46 Total: -26.89 kcal Atomic # 9 Polarization: -7.09 SS G_CDS: 0.75 Total: -6.34 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 1.85 Total: 47.79 kcal Total: -71.23 3.97 -67.26 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606254759.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.518 kcal (2) G-P(sol) polarization free energy of solvation -71.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds