Wall clock time and date at job start Mon Mar 30 2020 02:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46508 * 109.46891 * 2 1 4 4 C 1.34825 * 119.85571 * 90.00128 * 3 2 1 5 5 O 1.21780 * 120.30161 * 359.95340 * 4 3 2 6 6 C 1.41696 * 119.39726 * 179.97438 * 4 3 2 7 7 C 1.35060 * 119.09179 * 0.02562 * 6 4 3 8 8 N 1.37037 * 119.65557 * 0.24695 * 7 6 4 9 9 C 1.37147 * 119.69451 * 179.75246 * 8 7 6 10 10 H 1.07998 * 119.99815 * 208.24809 * 9 8 7 11 11 C 1.39009 * 120.00129 * 28.25410 * 9 8 7 12 12 N 1.31311 * 119.99963 * 17.78188 * 11 9 8 13 13 Si 1.86800 * 119.99878 * 197.78928 * 11 9 8 14 14 H 1.48500 * 109.47329 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47099 * 119.99891 * 13 11 9 16 16 H 1.48505 * 109.46797 * 239.99979 * 13 11 9 17 17 C 1.34537 * 120.60902 * 359.48781 * 8 7 6 18 18 O 1.21570 * 119.52814 * 180.27885 * 17 8 7 19 19 H 1.09005 * 109.46889 * 300.00209 * 1 2 3 20 20 H 1.08994 * 109.46944 * 59.99756 * 1 2 3 21 21 H 1.08999 * 109.46740 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47411 * 239.99890 * 2 1 3 23 23 H 1.09001 * 109.47160 * 119.99583 * 2 1 3 24 24 H 1.07995 * 120.45658 * 179.97438 * 6 4 3 25 25 H 1.08002 * 120.17061 * 179.97438 * 7 6 4 26 26 H 0.96998 * 120.00063 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2421 2.0141 1.1693 5 8 2.0393 1.4430 2.2256 6 6 2.7149 3.3498 1.1580 7 6 2.9306 3.9600 -0.0275 8 7 2.6851 3.2828 -1.1932 9 6 2.8990 3.9034 -2.3974 10 1 2.3228 3.6142 -3.2638 11 6 3.8575 4.9047 -2.5028 12 7 4.7862 5.0240 -1.5822 13 14 3.8243 6.0804 -3.9539 14 1 2.6868 5.7360 -4.8442 15 1 3.6635 7.4716 -3.4602 16 1 5.0967 5.9679 -4.7114 17 6 2.2413 2.0130 -1.1674 18 8 2.0348 1.4291 -2.2135 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5138 0.8900 24 1 2.8994 3.8731 2.0845 25 1 3.2904 4.9779 -0.0564 26 1 5.4553 5.7224 -1.6559 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606254979.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:38 Heat of formation + Delta-G solvation = -40.115608 kcal Electronic energy + Delta-G solvation = -14078.192534 eV Core-core repulsion = 11543.785355 eV Total energy + Delta-G solvation = -2534.407179 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.079 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.21601 -37.94785 -36.49507 -34.41754 -32.97898 -30.74956 -29.73060 -25.59955 -24.21443 -22.40940 -21.79338 -18.73078 -18.03186 -16.15759 -16.02724 -15.69280 -15.06477 -14.23837 -14.04507 -13.55559 -13.33083 -12.73244 -12.41967 -12.37819 -11.98607 -11.80536 -11.33016 -11.21699 -10.71506 -10.59455 -10.41642 -9.64359 -9.33914 -9.10858 -8.90415 -7.66268 -6.89478 -4.57884 2.20103 2.88715 2.96254 3.06199 3.13729 3.23114 3.84652 4.29660 4.48990 4.84501 5.37391 5.60619 5.68262 5.82818 6.02290 6.09503 6.34267 6.40857 6.53306 6.65581 6.95108 7.07523 7.34060 7.80434 8.08789 8.49939 8.65805 8.76627 9.26504 10.13230 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.048806 B = 0.010938 C = 0.009349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.560729 B = 2559.337413 C = 2994.367413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.110 3.890 3 N -0.554 5.554 4 C 0.542 3.458 5 O -0.571 6.571 6 C -0.387 4.387 7 C 0.225 3.775 8 N -0.356 5.356 9 C -0.341 4.341 10 H 0.118 0.882 11 C 0.044 3.956 12 N -0.859 5.859 13 Si 0.944 3.056 14 H -0.261 1.261 15 H -0.272 1.272 16 H -0.275 1.275 17 C 0.651 3.349 18 O -0.564 6.564 19 H 0.058 0.942 20 H 0.059 0.941 21 H 0.066 0.934 22 H 0.088 0.912 23 H 0.089 0.911 24 H 0.148 0.852 25 H 0.174 0.826 26 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.970 -0.164 0.467 3.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.012 4.012 3 N -0.298 5.298 4 C 0.344 3.656 5 O -0.454 6.454 6 C -0.415 4.415 7 C 0.092 3.908 8 N -0.057 5.057 9 C -0.467 4.467 10 H 0.135 0.865 11 C -0.164 4.164 12 N -0.493 5.493 13 Si 0.768 3.232 14 H -0.185 1.185 15 H -0.197 1.197 16 H -0.200 1.200 17 C 0.358 3.642 18 O -0.441 6.441 19 H 0.077 0.923 20 H 0.078 0.922 21 H 0.085 0.915 22 H 0.107 0.893 23 H 0.107 0.893 24 H 0.166 0.834 25 H 0.191 0.809 26 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.037 -0.749 0.322 3.145 hybrid contribution 0.345 0.602 -0.515 0.864 sum -2.693 -0.147 -0.193 2.704 Atomic orbital electron populations 1.22031 0.95357 1.02079 1.02423 1.21442 0.94942 0.81137 1.03726 1.46622 1.60480 1.15583 1.07133 1.17375 0.78063 0.87684 0.82447 1.90716 1.55896 1.69059 1.29687 1.21337 1.25057 0.96539 0.98525 1.22520 0.86242 0.98389 0.83693 1.40913 1.49475 1.07655 1.07654 1.19983 1.21823 1.16866 0.88063 0.86452 1.25600 0.92726 0.98441 0.99611 1.69818 1.12325 1.31654 1.35510 0.85582 0.79088 0.78885 0.79618 1.18516 1.19734 1.20032 1.16459 0.82179 0.81975 0.83627 1.90817 1.57877 1.64828 1.30538 0.92315 0.92237 0.91477 0.89343 0.89271 0.83404 0.80891 0.90555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 10.24 37.16 0.38 -2.24 15 2 C 0.11 2.05 5.82 -4.03 -0.02 2.03 15 3 N -0.55 -12.44 2.56 -123.99 -0.32 -12.76 15 4 C 0.54 12.50 7.45 -14.92 -0.11 12.38 15 5 O -0.57 -13.86 16.70 5.12 0.09 -13.78 15 6 C -0.39 -8.37 10.01 -39.39 -0.39 -8.77 15 7 C 0.23 5.08 9.13 -16.36 -0.15 4.93 15 8 N -0.36 -8.82 2.76 -66.31 -0.18 -9.00 15 9 C -0.34 -8.56 9.07 -14.89 -0.14 -8.69 15 10 H 0.12 3.00 7.52 -52.49 -0.39 2.61 15 11 C 0.04 1.04 5.01 -17.49 -0.09 0.95 15 12 N -0.86 -20.54 11.16 55.50 0.62 -19.92 15 13 Si 0.94 18.02 29.59 -169.99 -5.03 12.99 15 14 H -0.26 -4.98 7.11 56.52 0.40 -4.58 15 15 H -0.27 -5.02 7.11 56.52 0.40 -4.62 15 16 H -0.27 -5.27 7.11 56.52 0.40 -4.87 15 17 C 0.65 16.14 8.07 -87.30 -0.70 15.43 15 18 O -0.56 -14.84 15.53 5.30 0.08 -14.75 15 19 H 0.06 0.99 8.14 -51.93 -0.42 0.57 15 20 H 0.06 1.03 8.14 -51.93 -0.42 0.60 15 21 H 0.07 0.87 8.14 -51.93 -0.42 0.45 15 22 H 0.09 1.62 7.39 -51.93 -0.38 1.23 15 23 H 0.09 1.59 7.42 -51.93 -0.39 1.20 15 24 H 0.15 2.85 8.06 -52.49 -0.42 2.43 15 25 H 0.17 3.78 6.22 -52.49 -0.33 3.45 15 26 H 0.28 6.23 8.31 -40.82 -0.34 5.89 15 LS Contribution 233.74 15.07 3.52 3.52 Total: -1.00 -28.55 233.74 -4.76 -33.31 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -2.32 Total: 4.37 kcal Atomic # 6 Polarization: 17.25 SS G_CDS: -1.23 Total: 16.03 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.12 Total: -41.68 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: 0.17 Total: -28.53 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -28.55 -4.76 -33.31 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606254979.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.808 kcal (2) G-P(sol) polarization free energy of solvation -28.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds