Wall clock time and date at job start Mon Mar 30 2020 02:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34839 * 119.87137 * 2 1 4 4 O 1.21784 * 120.30397 * 359.97438 * 3 2 1 5 5 C 1.41570 * 119.38870 * 180.30098 * 3 2 1 6 6 C 1.35028 * 119.11275 * 359.40796 * 5 3 2 7 7 N 1.36831 * 119.68141 * 0.28010 * 6 5 3 8 8 C 1.46498 * 119.68793 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.46840 * 90.00402 * 8 7 6 10 10 H 1.08006 * 120.00280 * 0.02562 * 9 8 7 11 11 C 1.37888 * 120.00033 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99651 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00000 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46894 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47083 * 120.00086 * 13 11 9 16 16 H 1.48497 * 109.47064 * 240.00430 * 13 11 9 17 17 C 1.34544 * 120.62412 * 0.02562 * 7 6 5 18 18 O 1.21586 * 119.53485 * 179.97438 * 17 7 6 19 19 H 1.09001 * 109.47005 * 270.31830 * 1 2 3 20 20 H 1.09005 * 109.47424 * 30.31596 * 1 2 3 21 21 H 1.09000 * 109.47321 * 150.31830 * 1 2 3 22 22 H 1.08002 * 120.44815 * 179.69163 * 5 3 2 23 23 H 1.07994 * 120.15732 * 180.30105 * 6 5 3 24 24 H 1.09006 * 109.47605 * 210.00055 * 8 7 6 25 25 H 1.09002 * 109.47592 * 330.00591 * 8 7 6 26 26 H 0.97000 * 119.99604 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1365 1.1692 0.0000 4 8 1.5308 2.2258 -0.0005 5 6 3.5522 1.1573 -0.0065 6 6 4.1992 -0.0278 -0.0003 7 7 3.4804 -1.1921 0.0062 8 6 4.1823 -2.4780 0.0134 9 6 4.4228 -2.9110 1.4367 10 1 4.0861 -2.2905 2.2542 11 6 5.0718 -4.0998 1.6954 12 7 5.4813 -4.8555 0.7001 13 14 5.3705 -4.6360 3.4597 14 1 4.8175 -3.6167 4.3872 15 1 4.7009 -5.9394 3.7010 16 1 6.8300 -4.7786 3.6933 17 6 2.1352 -1.1672 0.0060 18 8 1.5164 -2.2138 0.0114 19 1 -0.3633 0.0057 1.0277 20 1 -0.3634 0.8872 -0.5187 21 1 -0.3634 -0.8928 -0.5089 22 1 4.1073 2.0838 -0.0116 23 1 5.2787 -0.0566 -0.0002 24 1 3.5752 -3.2263 -0.4963 25 1 5.1377 -2.3735 -0.5009 26 1 5.9375 -5.6919 0.8821 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606255045.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:20 Heat of formation + Delta-G solvation = -38.302267 kcal Electronic energy + Delta-G solvation = -13782.373097 eV Core-core repulsion = 11248.044550 eV Total energy + Delta-G solvation = -2534.328547 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.079 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.67218 -38.43723 -36.67608 -34.74501 -33.11454 -31.07134 -27.95713 -27.11730 -23.85670 -23.21392 -22.18261 -18.62005 -17.23193 -16.96625 -16.47432 -16.08980 -15.17057 -14.54764 -14.30485 -13.84039 -13.27445 -13.10845 -12.96193 -12.47447 -12.03188 -11.64239 -11.49113 -10.90248 -10.85403 -10.46312 -10.12107 -9.80549 -9.66551 -9.34243 -8.70591 -7.91881 -6.32893 -4.40614 1.50652 2.53768 2.61801 3.16770 3.25336 3.29576 3.65859 4.00606 4.24963 4.89975 5.03233 5.21995 5.58526 5.60956 5.82775 5.83307 5.87849 6.11986 6.50547 6.84700 6.95530 7.18556 7.60971 7.79312 7.89074 8.01241 8.47805 8.63813 9.26552 10.75470 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.047334 B = 0.008998 C = 0.008601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.401176 B = 3110.932559 C = 3254.814217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.562 5.562 3 C 0.551 3.449 4 O -0.546 6.546 5 C -0.346 4.346 6 C 0.211 3.789 7 N -0.512 5.512 8 C 0.236 3.764 9 C -0.543 4.543 10 H 0.063 0.937 11 C 0.068 3.932 12 N -0.888 5.888 13 Si 0.906 3.094 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.280 1.280 17 C 0.685 3.315 18 O -0.531 6.531 19 H 0.067 0.933 20 H 0.086 0.914 21 H 0.087 0.913 22 H 0.161 0.839 23 H 0.173 0.827 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.965 7.336 -1.736 7.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.307 5.307 3 C 0.349 3.651 4 O -0.425 6.425 5 C -0.374 4.374 6 C 0.082 3.918 7 N -0.228 5.228 8 C 0.118 3.882 9 C -0.582 4.582 10 H 0.081 0.919 11 C -0.136 4.136 12 N -0.525 5.525 13 Si 0.733 3.267 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.206 1.206 17 C 0.388 3.612 18 O -0.403 6.403 19 H 0.085 0.915 20 H 0.105 0.895 21 H 0.106 0.894 22 H 0.178 0.822 23 H 0.190 0.810 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.615 6.945 -1.787 7.633 hybrid contribution 0.319 -0.376 1.004 1.119 sum -2.295 6.569 -0.783 7.002 Atomic orbital electron populations 1.21747 0.76555 1.04220 1.03332 1.46474 1.09976 1.06904 1.67368 1.17356 0.89029 0.82680 0.76015 1.90793 1.71054 1.29584 1.51087 1.21641 0.92755 0.98873 1.24096 1.22455 0.99267 0.84662 0.85453 1.45641 1.04578 1.10385 1.62152 1.19937 0.92240 0.76478 0.99519 1.21307 1.39023 1.06635 0.91188 0.91852 1.24908 0.94820 0.95684 0.98156 1.69919 1.38326 1.13134 1.31158 0.86311 0.77956 0.78834 0.83626 1.19606 1.20588 1.20609 1.16002 0.82294 0.83817 0.79114 1.90981 1.65949 1.30057 1.53329 0.91454 0.89514 0.89422 0.82151 0.80951 0.92019 0.92779 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.27 10.12 59.84 0.61 1.87 15 2 N -0.56 -10.37 2.96 -131.50 -0.39 -10.76 15 3 C 0.55 10.03 7.44 -14.96 -0.11 9.92 15 4 O -0.55 -10.91 16.70 5.11 0.09 -10.82 15 5 C -0.35 -5.34 10.00 -39.45 -0.39 -5.74 15 6 C 0.21 3.32 10.38 -16.46 -0.17 3.15 15 7 N -0.51 -10.26 2.59 -122.83 -0.32 -10.58 15 8 C 0.24 5.49 5.09 -5.19 -0.03 5.46 15 9 C -0.54 -14.10 9.38 -34.44 -0.32 -14.42 15 10 H 0.06 1.67 7.81 -52.48 -0.41 1.26 15 11 C 0.07 1.80 5.46 -17.82 -0.10 1.70 15 12 N -0.89 -24.22 13.29 55.43 0.74 -23.49 15 13 Si 0.91 20.46 29.54 -169.99 -5.02 15.43 15 14 H -0.27 -6.12 7.11 56.52 0.40 -5.72 15 15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 16 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 17 C 0.68 14.37 8.11 -87.29 -0.71 13.66 15 18 O -0.53 -12.70 15.35 5.29 0.08 -12.62 15 19 H 0.07 0.95 8.14 -51.93 -0.42 0.53 15 20 H 0.09 1.20 7.43 -51.93 -0.39 0.81 15 21 H 0.09 1.29 7.39 -51.93 -0.38 0.90 15 22 H 0.16 2.04 8.06 -52.49 -0.42 1.62 15 23 H 0.17 2.12 8.06 -52.49 -0.42 1.70 15 24 H 0.06 1.61 7.37 -51.93 -0.38 1.23 15 25 H 0.05 1.20 8.03 -51.93 -0.42 0.79 15 26 H 0.27 6.90 8.31 -40.82 -0.34 6.56 15 LS Contribution 238.35 15.07 3.59 3.59 Total: -1.00 -30.86 238.35 -4.84 -35.70 By element: Atomic # 1 Polarization: 0.33 SS G_CDS: -2.38 Total: -2.05 kcal Atomic # 6 Polarization: 16.82 SS G_CDS: -1.23 Total: 15.60 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: 0.03 Total: -44.83 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: 0.17 Total: -23.44 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -30.86 -4.84 -35.70 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606255045.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.602 kcal (2) G-P(sol) polarization free energy of solvation -30.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds