Wall clock time and date at job start Mon Mar 30 2020 02:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34839 * 119.87137 * 2 1 4 4 O 1.21784 * 120.30397 * 359.97438 * 3 2 1 5 5 C 1.41570 * 119.38870 * 180.30098 * 3 2 1 6 6 C 1.35028 * 119.11275 * 359.40796 * 5 3 2 7 7 N 1.36831 * 119.68141 * 0.28010 * 6 5 3 8 8 C 1.46498 * 119.68793 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.46840 * 90.00402 * 8 7 6 10 10 H 1.08006 * 120.00280 * 0.02562 * 9 8 7 11 11 C 1.37888 * 120.00033 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99651 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00000 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46894 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47083 * 120.00086 * 13 11 9 16 16 H 1.48497 * 109.47064 * 240.00430 * 13 11 9 17 17 C 1.34544 * 120.62412 * 0.02562 * 7 6 5 18 18 O 1.21586 * 119.53485 * 179.97438 * 17 7 6 19 19 H 1.09001 * 109.47005 * 270.31830 * 1 2 3 20 20 H 1.09005 * 109.47424 * 30.31596 * 1 2 3 21 21 H 1.09000 * 109.47321 * 150.31830 * 1 2 3 22 22 H 1.08002 * 120.44815 * 179.69163 * 5 3 2 23 23 H 1.07994 * 120.15732 * 180.30105 * 6 5 3 24 24 H 1.09006 * 109.47605 * 210.00055 * 8 7 6 25 25 H 1.09002 * 109.47592 * 330.00591 * 8 7 6 26 26 H 0.97000 * 119.99604 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1365 1.1692 0.0000 4 8 1.5308 2.2258 -0.0005 5 6 3.5522 1.1573 -0.0065 6 6 4.1992 -0.0278 -0.0003 7 7 3.4804 -1.1921 0.0062 8 6 4.1823 -2.4780 0.0134 9 6 4.4228 -2.9110 1.4367 10 1 4.0861 -2.2905 2.2542 11 6 5.0718 -4.0998 1.6954 12 7 5.4813 -4.8555 0.7001 13 14 5.3705 -4.6360 3.4597 14 1 4.8175 -3.6167 4.3872 15 1 4.7009 -5.9394 3.7010 16 1 6.8300 -4.7786 3.6933 17 6 2.1352 -1.1672 0.0060 18 8 1.5164 -2.2138 0.0114 19 1 -0.3633 0.0057 1.0277 20 1 -0.3634 0.8872 -0.5187 21 1 -0.3634 -0.8928 -0.5089 22 1 4.1073 2.0838 -0.0116 23 1 5.2787 -0.0566 -0.0002 24 1 3.5752 -3.2263 -0.4963 25 1 5.1377 -2.3735 -0.5009 26 1 5.9375 -5.6919 0.8821 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606255045.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:20 Heat of formation + Delta-G solvation = -58.300177 kcal Electronic energy + Delta-G solvation = -13783.240272 eV Core-core repulsion = 11248.044550 eV Total energy + Delta-G solvation = -2535.195722 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.079 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.18303 -39.98986 -38.24022 -36.30631 -35.00105 -32.61796 -29.55048 -28.68847 -25.59704 -24.61618 -23.83690 -20.10300 -18.99749 -18.57560 -17.95765 -17.72271 -16.84489 -16.11861 -15.92379 -15.45262 -14.67389 -14.58378 -14.42125 -14.09279 -13.47863 -13.37173 -13.12851 -12.68234 -12.56748 -12.31123 -11.78863 -11.49541 -11.30880 -10.83239 -10.69478 -9.41601 -8.31121 -6.45675 0.17210 0.98424 1.11195 1.39649 1.43138 1.53730 2.19088 2.37288 2.57329 3.02723 3.64024 3.96371 4.28752 4.37727 4.42176 4.50877 4.67066 4.77051 4.97311 5.04480 5.35629 5.59272 5.63841 5.85220 6.37214 6.50986 6.60624 6.96504 7.25539 8.76845 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.047334 B = 0.008998 C = 0.008601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.401176 B = 3110.932559 C = 3254.814217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.561 5.561 3 C 0.541 3.459 4 O -0.564 6.564 5 C -0.327 4.327 6 C 0.206 3.794 7 N -0.520 5.520 8 C 0.251 3.749 9 C -0.555 4.555 10 H 0.055 0.945 11 C 0.023 3.977 12 N -0.917 5.917 13 Si 0.966 3.034 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.267 1.267 17 C 0.680 3.320 18 O -0.573 6.573 19 H 0.077 0.923 20 H 0.101 0.899 21 H 0.088 0.912 22 H 0.196 0.804 23 H 0.212 0.788 24 H 0.025 0.975 25 H 0.067 0.933 26 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.062 8.520 -1.106 8.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.305 5.305 3 C 0.341 3.659 4 O -0.445 6.445 5 C -0.353 4.353 6 C 0.080 3.920 7 N -0.236 5.236 8 C 0.132 3.868 9 C -0.594 4.594 10 H 0.073 0.927 11 C -0.178 4.178 12 N -0.556 5.556 13 Si 0.791 3.209 14 H -0.195 1.195 15 H -0.209 1.209 16 H -0.192 1.192 17 C 0.383 3.617 18 O -0.448 6.448 19 H 0.095 0.905 20 H 0.120 0.880 21 H 0.107 0.893 22 H 0.213 0.787 23 H 0.229 0.771 24 H 0.044 0.956 25 H 0.085 0.915 26 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.701 8.189 -1.162 8.444 hybrid contribution -0.016 -0.666 0.774 1.021 sum -1.717 7.524 -0.388 7.727 Atomic orbital electron populations 1.21959 0.75084 1.05008 1.04283 1.46586 1.11108 1.06263 1.66565 1.17866 0.90139 0.82148 0.75731 1.90793 1.71643 1.29907 1.52115 1.21987 0.91397 1.00068 1.21845 1.23017 1.00835 0.83037 0.85075 1.45449 1.04417 1.10813 1.62872 1.19508 0.92048 0.77291 0.97933 1.21541 1.38802 1.06846 0.92168 0.92678 1.25671 0.94654 0.95748 1.01758 1.69999 1.39039 1.13591 1.32941 0.85385 0.78381 0.77984 0.79180 1.19549 1.20871 1.19199 1.16181 0.82640 0.83950 0.78914 1.90945 1.66901 1.31516 1.55448 0.90471 0.88008 0.89315 0.78688 0.77150 0.95645 0.91518 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.30 10.12 127.77 1.29 3.60 15 2 N -0.56 -20.19 2.96 -806.45 -2.39 -22.57 15 3 C 0.54 18.60 7.44 85.05 0.63 19.23 15 4 O -0.56 -21.33 16.70 -4.62 -0.08 -21.41 15 5 C -0.33 -9.01 10.00 22.35 0.22 -8.79 15 6 C 0.21 5.92 10.38 83.17 0.86 6.79 15 7 N -0.52 -20.37 2.59 -660.90 -1.71 -22.08 15 8 C 0.25 11.70 5.09 85.63 0.44 12.13 15 9 C -0.56 -28.66 9.38 25.60 0.24 -28.42 15 10 H 0.05 2.88 7.81 -2.91 -0.02 2.85 15 11 C 0.02 1.19 5.46 84.66 0.46 1.65 15 12 N -0.92 -49.95 13.29 21.45 0.28 -49.67 15 13 Si 0.97 41.39 29.54 68.60 2.03 43.42 15 14 H -0.27 -11.48 7.11 99.48 0.71 -10.77 15 15 H -0.28 -12.17 7.11 99.48 0.71 -11.46 15 16 H -0.27 -10.81 7.11 99.48 0.71 -10.10 15 17 C 0.68 28.46 8.11 179.18 1.45 29.91 15 18 O -0.57 -28.01 15.35 -3.99 -0.06 -28.08 15 19 H 0.08 2.12 8.14 -2.39 -0.02 2.10 15 20 H 0.10 2.69 7.43 -2.38 -0.02 2.67 15 21 H 0.09 2.60 7.39 -2.39 -0.02 2.58 15 22 H 0.20 4.03 8.06 -2.91 -0.02 4.01 15 23 H 0.21 4.33 8.06 -2.91 -0.02 4.31 15 24 H 0.03 1.36 7.37 -2.38 -0.02 1.35 15 25 H 0.07 2.92 8.03 -2.39 -0.02 2.90 15 26 H 0.27 13.90 8.31 -92.71 -0.77 13.12 15 Total: -1.00 -65.58 238.35 4.87 -60.72 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: 1.19 Total: 3.57 kcal Atomic # 6 Polarization: 30.49 SS G_CDS: 5.61 Total: 36.10 kcal Atomic # 7 Polarization: -90.51 SS G_CDS: -3.82 Total: -94.32 kcal Atomic # 8 Polarization: -49.34 SS G_CDS: -0.14 Total: -49.48 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -65.58 4.87 -60.72 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606255045.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.418 kcal (2) G-P(sol) polarization free energy of solvation -65.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds