Wall clock time and date at job start Mon Mar 30 2020 02:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99812 * 2 1 4 4 H 1.48503 * 109.46960 * 264.97873 * 3 2 1 5 5 H 1.48498 * 109.47492 * 24.97775 * 3 2 1 6 6 H 1.48506 * 109.47185 * 144.98147 * 3 2 1 7 7 C 1.37876 * 120.00226 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00255 * 183.37536 * 7 2 1 9 9 C 1.50705 * 120.00067 * 3.38107 * 7 2 1 10 10 C 1.50700 * 108.48915 * 64.88957 * 9 7 2 11 11 O 1.20822 * 120.00034 * 111.38777 * 10 9 7 12 12 O 1.34229 * 119.99777 * 291.38459 * 10 9 7 13 13 C 1.51843 * 108.64869 * 182.84711 * 9 7 2 14 14 C 1.53029 * 110.75410 * 54.54318 * 13 9 7 15 15 C 1.51371 * 108.61687 * 85.72962 * 14 13 9 16 16 C 1.29527 * 120.36159 * 288.09733 * 15 14 13 17 17 C 1.51368 * 120.36272 * 0.02562 * 16 15 14 18 18 C 1.51844 * 108.64475 * 306.93737 * 9 7 2 19 19 H 0.96994 * 120.00066 * 359.97438 * 1 2 3 20 20 H 0.96708 * 116.99299 * 179.97438 * 12 10 9 21 21 H 1.09004 * 109.22225 * 294.21392 * 13 9 7 22 22 H 1.09005 * 109.18171 * 174.85381 * 13 9 7 23 23 H 1.08997 * 109.61356 * 205.46734 * 14 13 9 24 24 H 1.09004 * 109.61203 * 325.99023 * 14 13 9 25 25 H 1.07997 * 119.82019 * 108.10716 * 15 14 13 26 26 H 1.08009 * 119.81997 * 180.02562 * 16 15 14 27 27 H 1.09000 * 109.61475 * 312.15078 * 17 16 15 28 28 H 1.09002 * 109.61654 * 191.62888 * 17 16 15 29 29 H 1.09001 * 109.22362 * 65.78790 * 18 9 7 30 30 H 1.09011 * 109.21882 * 185.13016 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6027 1.9851 -1.3947 5 1 1.3975 2.6810 0.5912 6 1 3.4896 1.4732 0.8034 7 6 2.0046 -1.1940 0.0005 8 1 3.0831 -1.1948 0.0556 9 6 1.2531 -2.4981 -0.0759 10 6 0.5560 -2.5706 -1.4100 11 8 0.9195 -3.3711 -2.2388 12 8 -0.4686 -1.7458 -1.6775 13 6 2.2507 -3.6393 0.0136 14 6 3.1183 -3.5042 1.2669 15 6 2.3906 -4.1441 2.4297 16 6 1.3477 -3.5731 2.9436 17 6 0.8430 -2.2588 2.3875 18 6 0.2041 -2.5189 1.0218 19 1 -0.4850 0.8400 0.0004 20 1 -0.8839 -1.8294 -2.5469 21 1 2.8905 -3.6267 -0.8689 22 1 1.7103 -4.5853 0.0514 23 1 4.0709 -4.0097 1.1086 24 1 3.2918 -2.4493 1.4797 25 1 2.7429 -5.0819 2.8332 26 1 0.8354 -4.0372 3.7734 27 1 1.6762 -1.5651 2.2750 28 1 0.1005 -1.8361 3.0643 29 1 -0.5405 -1.7485 0.8214 30 1 -0.2835 -3.4938 1.0337 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642876261.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:56 Heat of formation + Delta-G solvation = -95.241565 kcal Electronic energy + Delta-G solvation = -14883.541052 eV Core-core repulsion = 12450.283775 eV Total energy + Delta-G solvation = -2433.257277 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.20612 -38.95081 -36.54361 -35.08471 -32.84932 -32.09910 -27.48430 -26.30495 -24.56090 -22.88679 -20.69821 -18.88221 -18.39174 -17.98211 -17.37727 -16.63356 -15.92023 -15.77334 -15.02578 -14.51871 -14.03210 -13.84784 -13.49595 -13.13400 -12.79096 -12.45799 -12.35419 -12.20509 -12.00968 -11.88161 -11.82491 -11.10723 -10.99159 -10.94137 -10.65643 -10.38921 -9.59100 -7.93011 -6.18263 1.45679 1.50346 1.56134 1.66356 1.85032 2.47322 2.89504 3.29648 4.10772 4.30697 4.53463 4.60352 4.66490 4.71439 4.90395 4.99571 5.08741 5.21969 5.33106 5.40020 5.55515 5.63900 5.74028 5.84771 6.02899 6.04416 6.19865 6.34721 6.37980 6.78888 7.47411 7.63353 8.95911 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.026157 B = 0.017101 C = 0.013390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.188182 B = 1636.947999 C = 2090.650962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.037 3.963 3 Si 0.942 3.058 4 H -0.288 1.288 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.531 4.531 8 H 0.063 0.937 9 C 0.074 3.926 10 C 0.483 3.517 11 O -0.603 6.603 12 O -0.470 6.470 13 C -0.077 4.077 14 C -0.084 4.084 15 C -0.166 4.166 16 C -0.161 4.161 17 C -0.073 4.073 18 C -0.092 4.092 19 H 0.262 0.738 20 H 0.379 0.621 21 H 0.041 0.959 22 H 0.038 0.962 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.122 0.878 26 H 0.118 0.882 27 H 0.073 0.927 28 H 0.049 0.951 29 H 0.098 0.902 30 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.992 -2.664 4.183 5.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.168 4.168 3 Si 0.768 3.232 4 H -0.214 1.214 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.567 4.567 8 H 0.081 0.919 9 C 0.073 3.927 10 C 0.331 3.669 11 O -0.500 6.500 12 O -0.275 6.275 13 C -0.115 4.115 14 C -0.121 4.121 15 C -0.183 4.183 16 C -0.179 4.179 17 C -0.110 4.110 18 C -0.130 4.130 19 H 0.072 0.928 20 H 0.234 0.766 21 H 0.060 0.940 22 H 0.057 0.943 23 H 0.088 0.912 24 H 0.096 0.904 25 H 0.140 0.860 26 H 0.135 0.865 27 H 0.092 0.908 28 H 0.068 0.932 29 H 0.116 0.884 30 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 1.069 -2.679 4.379 5.243 hybrid contribution -0.012 0.799 -1.075 1.340 sum 1.057 -1.880 3.303 3.945 Atomic orbital electron populations 1.69909 1.06060 1.26688 1.45291 1.25522 0.95610 1.01256 0.94453 0.85828 0.79164 0.80451 0.77737 1.21435 1.20718 1.19350 1.20991 0.93026 0.89301 1.53429 0.91927 1.17921 0.92669 0.96146 0.85976 1.25625 0.75724 0.73656 0.91929 1.90470 1.66713 1.40830 1.51937 1.85182 1.45188 1.58052 1.39036 1.20999 0.97007 0.96068 0.97403 1.20808 0.97150 1.01690 0.92487 1.22646 0.97847 1.00133 0.97721 1.22831 0.97566 0.97659 0.99823 1.20603 1.00142 0.95256 0.94977 1.21285 0.98833 0.99159 0.93682 0.92758 0.76620 0.94037 0.94280 0.91161 0.90431 0.86025 0.86457 0.90834 0.93223 0.88369 0.96834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -42.33 8.28 21.45 0.18 -42.15 16 2 C 0.04 1.83 4.98 84.65 0.42 2.25 16 3 Si 0.94 40.31 29.54 68.60 2.03 42.34 16 4 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.53 -26.41 5.21 25.60 0.13 -26.27 16 8 H 0.06 3.13 6.69 -2.91 -0.02 3.11 16 9 C 0.07 3.54 0.48 -54.43 -0.03 3.51 16 10 C 0.48 24.26 6.79 71.24 0.48 24.74 16 11 O -0.60 -31.95 16.47 21.98 0.36 -31.59 16 12 O -0.47 -21.86 10.19 -51.40 -0.52 -22.38 16 13 C -0.08 -3.34 3.89 30.22 0.12 -3.23 16 14 C -0.08 -3.11 5.42 30.07 0.16 -2.95 16 15 C -0.17 -5.43 9.34 27.37 0.26 -5.18 16 16 C -0.16 -5.45 9.34 27.37 0.26 -5.19 16 17 C -0.07 -2.91 5.48 30.06 0.16 -2.75 16 18 C -0.09 -4.14 3.98 30.21 0.12 -4.02 16 19 H 0.26 12.72 8.31 -92.71 -0.77 11.95 16 20 H 0.38 14.02 9.10 -74.05 -0.67 13.34 16 21 H 0.04 1.89 7.67 -2.38 -0.02 1.87 16 22 H 0.04 1.67 7.86 -2.38 -0.02 1.65 16 23 H 0.07 2.24 8.14 -2.39 -0.02 2.23 16 24 H 0.08 3.13 4.95 -2.39 -0.01 3.12 16 25 H 0.12 3.27 8.06 -2.91 -0.02 3.25 16 26 H 0.12 3.34 8.06 -2.91 -0.02 3.31 16 27 H 0.07 3.23 5.39 -2.39 -0.01 3.22 16 28 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.10 4.89 5.16 -2.39 -0.01 4.88 16 30 H 0.01 0.58 7.86 -2.38 -0.02 0.56 16 Total: -1.00 -56.71 236.09 4.61 -52.10 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 0.48 Total: 20.76 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: 2.09 Total: -19.08 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.18 Total: -42.15 kcal Atomic # 8 Polarization: -53.81 SS G_CDS: -0.16 Total: -53.97 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Total: -56.71 4.61 -52.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642876261.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.141 kcal (2) G-P(sol) polarization free energy of solvation -56.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds