Wall clock time and date at job start Mon Mar 30 2020 02:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30530 * 1 3 3 Si 1.86801 * 119.99746 * 2 1 4 4 H 1.48506 * 109.46918 * 239.99996 * 3 2 1 5 5 H 1.48500 * 109.47213 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47248 * 119.99904 * 3 2 1 7 7 C 1.40456 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00155 * 180.02562 * 7 2 1 9 9 C 1.41031 * 120.00109 * 359.97438 * 7 2 1 10 10 O 1.21438 * 119.99488 * 0.02562 * 9 7 2 11 11 C 1.50693 * 120.00146 * 180.02562 * 9 7 2 12 12 C 1.54057 * 111.89637 * 61.01176 * 11 9 7 13 13 C 1.54897 * 104.08494 * 98.55862 * 12 11 9 14 14 C 1.54795 * 102.74092 * 38.67407 * 13 12 11 15 15 C 1.54316 * 104.51731 * 322.39204 * 14 13 12 16 16 H 1.09001 * 111.87702 * 260.41517 * 15 14 13 17 17 O 1.43824 * 108.56264 * 137.13765 * 15 14 13 18 18 C 1.44301 * 107.21254 * 219.72210 * 17 15 14 19 19 C 1.54615 * 111.93964 * 298.19862 * 11 9 7 20 20 H 0.96994 * 119.99735 * 0.02562 * 1 2 3 21 21 H 1.09004 * 110.50772 * 339.91152 * 12 11 9 22 22 H 1.09002 * 110.62804 * 217.26553 * 12 11 9 23 23 H 1.09001 * 110.76311 * 156.99203 * 13 12 11 24 24 H 1.09003 * 110.75788 * 280.36430 * 13 12 11 25 25 H 1.09005 * 110.42607 * 81.14711 * 14 13 12 26 26 H 1.08999 * 110.43044 * 203.62967 * 14 13 12 27 27 H 1.09009 * 110.61882 * 281.42467 * 18 17 15 28 28 H 1.08998 * 110.61744 * 158.43733 * 18 17 15 29 29 H 1.08999 * 110.91213 * 17.56073 * 19 11 9 30 30 H 1.09003 * 110.91214 * 141.14081 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2392 1.6178 0.0000 4 1 3.0930 1.6964 -1.2126 5 1 1.2742 2.7465 -0.0006 6 1 3.0930 1.6965 1.2125 7 6 2.0076 -1.2164 -0.0005 8 1 3.0876 -1.2164 -0.0001 9 6 1.3025 -2.4378 -0.0005 10 8 0.0881 -2.4377 -0.0005 11 6 2.0559 -3.7428 -0.0005 12 6 2.9431 -3.8940 1.2498 13 6 2.1035 -4.7806 2.2028 14 6 1.4515 -5.7986 1.2361 15 6 1.1212 -4.9759 -0.0270 16 1 0.0726 -4.6795 -0.0559 17 8 1.4784 -5.7509 -1.1847 18 6 2.0653 -4.8439 -2.1413 19 6 2.9317 -3.9042 -1.2645 20 1 -0.4849 0.8400 -0.0004 21 1 3.1339 -2.9209 1.7026 22 1 3.8818 -4.3872 0.9973 23 1 2.7447 -5.2882 2.9235 24 1 1.3425 -4.1885 2.7111 25 1 2.1522 -6.5985 0.9965 26 1 0.5404 -6.2080 1.6725 27 1 1.2906 -4.2789 -2.6599 28 1 2.6874 -5.3865 -2.8531 29 1 3.0847 -2.9440 -1.7570 30 1 3.8861 -4.3703 -1.0196 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687411178.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:33 Heat of formation + Delta-G solvation = -101.435390 kcal Electronic energy + Delta-G solvation = -14583.732046 eV Core-core repulsion = 12150.206185 eV Total energy + Delta-G solvation = -2433.525861 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.77450 -36.24928 -34.60264 -32.63895 -31.35657 -27.35060 -27.03065 -26.03293 -21.74119 -21.17462 -20.13791 -18.35233 -16.26243 -15.85171 -15.39958 -14.78680 -14.35497 -13.73521 -13.51300 -13.02199 -12.67510 -12.25871 -11.66301 -11.47768 -11.37640 -10.98579 -10.91696 -10.56438 -10.53609 -10.35695 -10.14220 -10.08744 -9.83917 -9.69537 -8.94465 -8.88122 -7.38612 -6.26301 -4.92244 3.04310 3.11361 3.13016 4.00177 4.18039 4.49922 5.07443 5.18795 5.54696 5.63280 5.68038 5.69412 5.94044 6.01487 6.12662 6.17646 6.27175 6.35544 6.37816 6.49417 6.55691 6.62416 6.81016 6.89629 6.96956 7.03031 7.23660 7.64088 8.06596 8.80593 8.87448 10.31947 10.54611 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.041088 B = 0.010993 C = 0.010539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.302484 B = 2546.433637 C = 2656.200695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.083 3.917 3 Si 0.903 3.097 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.529 4.529 8 H 0.069 0.931 9 C 0.385 3.615 10 O -0.541 6.541 11 C -0.128 4.128 12 C -0.100 4.100 13 C -0.122 4.122 14 C -0.120 4.120 15 C 0.081 3.919 16 H 0.092 0.908 17 O -0.388 6.388 18 C 0.049 3.951 19 C -0.134 4.134 20 H 0.273 0.727 21 H 0.075 0.925 22 H 0.057 0.943 23 H 0.060 0.940 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.926 -4.654 0.435 7.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.087 0.913 9 C 0.279 3.721 10 O -0.429 6.429 11 C -0.129 4.129 12 C -0.137 4.137 13 C -0.160 4.160 14 C -0.158 4.158 15 C 0.024 3.976 16 H 0.109 0.891 17 O -0.308 6.308 18 C -0.027 4.027 19 C -0.172 4.172 20 H 0.084 0.916 21 H 0.094 0.906 22 H 0.076 0.924 23 H 0.079 0.921 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.126 -4.837 0.410 7.060 hybrid contribution 0.682 1.043 -0.029 1.247 sum 5.808 -3.794 0.381 6.948 Atomic orbital electron populations 1.69943 1.07480 1.28045 1.31419 1.26005 0.94561 1.00853 0.92584 0.86493 0.80130 0.80844 0.79823 1.18986 1.20365 1.18964 1.20652 0.94798 0.91585 1.48977 0.91263 1.19120 0.88530 0.86512 0.77950 1.90392 1.15532 1.88079 1.48940 1.23051 0.96014 0.98727 0.95107 1.22308 0.96549 1.00011 0.94855 1.22486 0.99103 0.97114 0.97287 1.22473 1.00303 0.97969 0.95055 1.23470 0.99970 0.89551 0.84609 0.89062 1.88711 1.81314 1.33039 1.27731 1.23465 0.95595 0.91405 0.92272 1.23130 0.97608 1.00369 0.96106 0.91558 0.90627 0.92433 0.92141 0.91300 0.91287 0.92017 0.92509 0.90186 0.89708 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.15 11.72 55.57 0.65 -20.50 16 2 C 0.08 2.21 5.50 -17.27 -0.10 2.11 16 3 Si 0.90 19.16 29.56 -169.99 -5.03 14.13 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.53 -14.17 7.92 -37.69 -0.30 -14.47 16 8 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 9 C 0.38 10.46 5.88 -33.25 -0.20 10.27 16 10 O -0.54 -16.84 14.08 5.42 0.08 -16.76 16 11 C -0.13 -2.81 0.68 -153.34 -0.10 -2.91 16 12 C -0.10 -1.91 5.90 -25.18 -0.15 -2.06 16 13 C -0.12 -2.15 6.90 -24.79 -0.17 -2.32 16 14 C -0.12 -2.17 6.53 -25.10 -0.16 -2.34 16 15 C 0.08 1.75 3.93 -25.12 -0.10 1.65 16 16 H 0.09 2.24 6.82 -51.93 -0.35 1.89 16 17 O -0.39 -8.07 11.03 -35.23 -0.39 -8.46 16 18 C 0.05 0.92 7.72 38.21 0.29 1.22 16 19 C -0.13 -2.60 6.21 -24.83 -0.15 -2.75 16 20 H 0.27 7.06 8.29 -40.82 -0.34 6.72 16 21 H 0.08 1.52 7.37 -51.93 -0.38 1.14 16 22 H 0.06 0.98 7.22 -51.93 -0.38 0.60 16 23 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 25 H 0.07 1.16 8.00 -51.93 -0.42 0.75 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 28 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.08 1.69 7.46 -51.93 -0.39 1.30 16 30 H 0.07 1.12 7.23 -51.93 -0.38 0.75 16 LS Contribution 245.86 15.07 3.71 3.71 Total: -1.00 -31.06 245.86 -6.07 -37.12 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -3.95 Total: 2.35 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: -1.13 Total: -11.60 kcal Atomic # 7 Polarization: -21.15 SS G_CDS: 0.65 Total: -20.50 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.31 Total: -25.21 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -31.06 -6.07 -37.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687411178.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.313 kcal (2) G-P(sol) polarization free energy of solvation -31.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds