Wall clock time and date at job start Mon Mar 30 2020 02:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30530 * 1 3 3 Si 1.86801 * 119.99746 * 2 1 4 4 H 1.48506 * 109.46918 * 239.99996 * 3 2 1 5 5 H 1.48500 * 109.47213 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47248 * 119.99904 * 3 2 1 7 7 C 1.40456 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00155 * 180.02562 * 7 2 1 9 9 C 1.41031 * 120.00109 * 359.97438 * 7 2 1 10 10 O 1.21438 * 119.99488 * 0.02562 * 9 7 2 11 11 C 1.50693 * 120.00146 * 180.02562 * 9 7 2 12 12 C 1.54057 * 111.89637 * 61.01176 * 11 9 7 13 13 C 1.54897 * 104.08494 * 98.55862 * 12 11 9 14 14 C 1.54795 * 102.74092 * 38.67407 * 13 12 11 15 15 C 1.54316 * 104.51731 * 322.39204 * 14 13 12 16 16 H 1.09001 * 111.87702 * 260.41517 * 15 14 13 17 17 O 1.43824 * 108.56264 * 137.13765 * 15 14 13 18 18 C 1.44301 * 107.21254 * 219.72210 * 17 15 14 19 19 C 1.54615 * 111.93964 * 298.19862 * 11 9 7 20 20 H 0.96994 * 119.99735 * 0.02562 * 1 2 3 21 21 H 1.09004 * 110.50772 * 339.91152 * 12 11 9 22 22 H 1.09002 * 110.62804 * 217.26553 * 12 11 9 23 23 H 1.09001 * 110.76311 * 156.99203 * 13 12 11 24 24 H 1.09003 * 110.75788 * 280.36430 * 13 12 11 25 25 H 1.09005 * 110.42607 * 81.14711 * 14 13 12 26 26 H 1.08999 * 110.43044 * 203.62967 * 14 13 12 27 27 H 1.09009 * 110.61882 * 281.42467 * 18 17 15 28 28 H 1.08998 * 110.61744 * 158.43733 * 18 17 15 29 29 H 1.08999 * 110.91213 * 17.56073 * 19 11 9 30 30 H 1.09003 * 110.91214 * 141.14081 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2392 1.6178 0.0000 4 1 3.0930 1.6964 -1.2126 5 1 1.2742 2.7465 -0.0006 6 1 3.0930 1.6965 1.2125 7 6 2.0076 -1.2164 -0.0005 8 1 3.0876 -1.2164 -0.0001 9 6 1.3025 -2.4378 -0.0005 10 8 0.0881 -2.4377 -0.0005 11 6 2.0559 -3.7428 -0.0005 12 6 2.9431 -3.8940 1.2498 13 6 2.1035 -4.7806 2.2028 14 6 1.4515 -5.7986 1.2361 15 6 1.1212 -4.9759 -0.0270 16 1 0.0726 -4.6795 -0.0559 17 8 1.4784 -5.7509 -1.1847 18 6 2.0653 -4.8439 -2.1413 19 6 2.9317 -3.9042 -1.2645 20 1 -0.4849 0.8400 -0.0004 21 1 3.1339 -2.9209 1.7026 22 1 3.8818 -4.3872 0.9973 23 1 2.7447 -5.2882 2.9235 24 1 1.3425 -4.1885 2.7111 25 1 2.1522 -6.5985 0.9965 26 1 0.5404 -6.2080 1.6725 27 1 1.2906 -4.2789 -2.6599 28 1 2.6874 -5.3865 -2.8531 29 1 3.0847 -2.9440 -1.7570 30 1 3.8861 -4.3703 -1.0196 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687411178.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:33 Heat of formation + Delta-G solvation = -122.154875 kcal Electronic energy + Delta-G solvation = -14584.630511 eV Core-core repulsion = 12150.206185 eV Total energy + Delta-G solvation = -2434.424326 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.43726 -38.26055 -36.18677 -34.73167 -32.98070 -29.25228 -28.60349 -27.75006 -23.47355 -22.91311 -21.62468 -20.13466 -18.15908 -17.80102 -16.94257 -16.55228 -16.00861 -15.29992 -15.23168 -14.69800 -14.35801 -14.12477 -13.48508 -13.10652 -12.98923 -12.72977 -12.63717 -12.22301 -12.12174 -11.98394 -11.84408 -11.60566 -11.49884 -11.29115 -10.94743 -10.53440 -9.47097 -8.28388 -7.07221 1.36046 1.37065 1.51269 2.19042 2.20274 2.93471 3.29687 3.64291 3.83464 4.02499 4.16796 4.26157 4.39053 4.42088 4.56292 4.61861 4.79533 4.84430 4.88440 5.00597 5.07923 5.12690 5.20596 5.25785 5.31026 5.35369 5.49887 5.99982 6.01103 6.73908 6.84970 8.29143 8.52703 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.041088 B = 0.010993 C = 0.010539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.302484 B = 2546.433637 C = 2656.200695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.027 3.973 3 Si 0.988 3.012 4 H -0.252 1.252 5 H -0.273 1.273 6 H -0.251 1.251 7 C -0.549 4.549 8 H 0.088 0.912 9 C 0.363 3.637 10 O -0.597 6.597 11 C -0.135 4.135 12 C -0.096 4.096 13 C -0.118 4.118 14 C -0.112 4.112 15 C 0.075 3.925 16 H 0.045 0.955 17 O -0.391 6.391 18 C 0.046 3.954 19 C -0.129 4.129 20 H 0.279 0.721 21 H 0.060 0.940 22 H 0.091 0.909 23 H 0.101 0.899 24 H 0.044 0.956 25 H 0.092 0.908 26 H 0.068 0.932 27 H 0.032 0.968 28 H 0.123 0.877 29 H 0.073 0.927 30 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.853 -5.004 0.698 10.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.192 4.192 3 Si 0.807 3.193 4 H -0.176 1.176 5 H -0.198 1.198 6 H -0.175 1.175 7 C -0.580 4.580 8 H 0.106 0.894 9 C 0.261 3.739 10 O -0.490 6.490 11 C -0.137 4.137 12 C -0.134 4.134 13 C -0.155 4.155 14 C -0.149 4.149 15 C 0.018 3.982 16 H 0.063 0.937 17 O -0.311 6.311 18 C -0.030 4.030 19 C -0.166 4.166 20 H 0.090 0.910 21 H 0.079 0.921 22 H 0.110 0.890 23 H 0.119 0.881 24 H 0.063 0.937 25 H 0.111 0.889 26 H 0.087 0.913 27 H 0.050 0.950 28 H 0.141 0.859 29 H 0.092 0.908 30 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.077 -5.205 0.671 9.633 hybrid contribution -0.283 1.135 -0.153 1.180 sum 7.794 -4.070 0.518 8.808 Atomic orbital electron populations 1.70102 1.09910 1.29640 1.32528 1.27231 0.95361 1.05454 0.91169 0.85202 0.78575 0.74848 0.80656 1.17563 1.19807 1.17520 1.21139 0.95800 0.92266 1.48816 0.89433 1.19891 0.88188 0.89175 0.76620 1.90354 1.17919 1.89424 1.51324 1.22901 0.96576 0.95949 0.98226 1.22325 0.97480 1.00062 0.93496 1.22483 0.98849 0.96643 0.97528 1.22446 1.01341 0.98037 0.93088 1.23375 0.97531 0.90566 0.86770 0.93749 1.88699 1.81438 1.33129 1.27821 1.23630 0.95341 0.91610 0.92467 1.23143 0.98588 1.00299 0.94570 0.91023 0.92091 0.89025 0.88071 0.93745 0.88935 0.91323 0.94985 0.85866 0.90807 0.88056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -46.97 11.72 21.91 0.26 -46.71 16 2 C 0.03 1.43 5.50 85.43 0.47 1.90 16 3 Si 0.99 39.02 29.56 68.60 2.03 41.05 16 4 H -0.25 -9.34 7.11 99.48 0.71 -8.64 16 5 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 6 H -0.25 -9.32 7.11 99.48 0.71 -8.62 16 7 C -0.55 -29.83 7.92 23.50 0.19 -29.64 16 8 H 0.09 4.27 7.85 -2.91 -0.02 4.25 16 9 C 0.36 20.44 5.88 26.37 0.16 20.59 16 10 O -0.60 -39.47 14.08 -3.52 -0.05 -39.52 16 11 C -0.14 -5.92 0.68 -51.42 -0.03 -5.95 16 12 C -0.10 -3.47 5.90 31.60 0.19 -3.29 16 13 C -0.12 -3.88 6.90 31.85 0.22 -3.66 16 14 C -0.11 -3.83 6.53 31.65 0.21 -3.62 16 15 C 0.08 3.26 3.93 31.64 0.12 3.39 16 16 H 0.04 2.33 6.82 -2.39 -0.02 2.32 16 17 O -0.39 -15.83 11.03 -148.98 -1.64 -17.47 16 18 C 0.05 1.65 7.72 72.66 0.56 2.21 16 19 C -0.13 -4.73 6.21 31.83 0.20 -4.53 16 20 H 0.28 14.94 8.29 -92.71 -0.77 14.17 16 21 H 0.06 2.37 7.37 -2.39 -0.02 2.35 16 22 H 0.09 2.69 7.22 -2.39 -0.02 2.67 16 23 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 24 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.09 2.76 8.00 -2.38 -0.02 2.74 16 26 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.12 3.38 8.14 -2.39 -0.02 3.36 16 29 H 0.07 2.86 7.46 -2.39 -0.02 2.84 16 30 H 0.10 3.01 7.23 -2.39 -0.02 3.00 16 Total: -1.00 -70.90 245.86 3.99 -66.91 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 1.13 Total: 18.34 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: 2.27 Total: -22.60 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: 0.26 Total: -46.71 kcal Atomic # 8 Polarization: -55.30 SS G_CDS: -1.69 Total: -56.99 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Total: -70.90 3.99 -66.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687411178.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.246 kcal (2) G-P(sol) polarization free energy of solvation -70.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds