Wall clock time and date at job start Mon Mar 30 2020 02:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47338 * 2 1 4 4 C 1.50703 * 109.46495 * 240.00394 * 2 1 3 5 5 H 1.08007 * 119.99701 * 239.99647 * 4 2 1 6 6 C 1.37876 * 120.00541 * 60.00321 * 4 2 1 7 7 N 1.31516 * 119.99631 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00183 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47495 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47006 * 120.00051 * 8 6 4 11 11 H 1.48495 * 109.47197 * 239.99869 * 8 6 4 12 12 C 1.50697 * 109.47271 * 120.00521 * 2 1 3 13 13 O 1.21233 * 120.00049 * 94.99699 * 12 2 1 14 14 C 1.47359 * 120.00193 * 274.99817 * 12 2 1 15 15 N 1.34365 * 126.72342 * 359.97438 * 14 12 2 16 16 N 1.28980 * 107.23122 * 180.02562 * 15 14 12 17 17 N 1.28710 * 109.04341 * 359.97438 * 16 15 14 18 18 C 1.46506 * 125.29112 * 180.02562 * 17 16 15 19 19 N 1.28869 * 109.41312 * 0.27093 * 17 16 15 20 20 H 1.08999 * 109.47338 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.46864 * 299.99539 * 1 2 3 22 22 H 1.09003 * 109.47208 * 59.99562 * 1 2 3 23 23 H 0.96999 * 119.99998 * 179.97438 * 7 6 4 24 24 H 1.09001 * 109.47060 * 90.03304 * 18 17 16 25 25 H 1.09004 * 109.47073 * 210.02793 * 18 17 16 26 26 H 1.09000 * 109.47212 * 330.02875 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6531 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3222 -1.1194 -4.0080 9 1 3.1481 -2.2856 -3.6040 10 1 1.1675 -1.5863 -4.8165 11 1 3.1470 -0.1857 -4.8161 12 6 2.0324 -0.7105 1.2304 13 8 2.3207 -1.8868 1.1758 14 6 2.1732 0.0245 2.4998 15 7 1.8952 1.3218 2.7121 16 7 2.1537 1.5701 3.9512 17 7 2.5764 0.4935 4.5159 18 6 2.9718 0.3742 5.9215 19 7 2.6027 -0.4618 3.6513 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8900 23 1 0.7087 1.1615 -3.4843 24 1 2.1046 0.0963 6.5206 25 1 3.7411 -0.3920 6.0188 26 1 3.3640 1.3292 6.2710 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697243918.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:37 Heat of formation + Delta-G solvation = 92.317977 kcal Electronic energy + Delta-G solvation = -13473.697388 eV Core-core repulsion = 10977.325711 eV Total energy + Delta-G solvation = -2496.371677 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -44.05436 -38.51416 -35.00781 -33.79262 -32.84638 -30.65109 -28.68847 -25.30244 -25.16010 -23.02515 -21.96766 -19.47934 -17.35734 -17.24206 -16.37034 -15.46996 -14.86521 -14.06860 -13.89830 -13.62611 -13.29682 -13.14877 -12.53358 -11.87877 -11.55732 -11.07143 -10.85359 -10.84295 -10.71821 -10.66852 -10.26544 -10.09715 -10.01486 -8.97678 -8.88961 -8.37916 -6.03080 -4.09382 1.22084 1.75843 1.99488 3.32742 3.40216 3.45542 3.49599 3.89621 4.34046 4.46773 4.68449 4.87424 4.97879 5.29582 5.58721 5.81672 6.16225 6.34885 6.75535 6.94359 6.99424 7.49792 7.76750 7.97071 8.14533 8.34260 8.54813 8.95189 9.55431 11.03802 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.065233 B = 0.007738 C = 0.007328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.127542 B = 3617.436406 C = 3819.905631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.024 3.976 3 H 0.066 0.934 4 C -0.513 4.513 5 H 0.070 0.930 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.900 3.100 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.453 3.547 13 O -0.432 6.432 14 C 0.114 3.886 15 N -0.230 5.230 16 N -0.072 5.072 17 N -0.147 5.147 18 C 0.095 3.905 19 N -0.269 5.269 20 H 0.032 0.968 21 H 0.018 0.982 22 H 0.099 0.901 23 H 0.262 0.738 24 H 0.100 0.900 25 H 0.109 0.891 26 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.243 0.817 13.871 14.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.004 3.996 3 H 0.084 0.916 4 C -0.551 4.551 5 H 0.088 0.912 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.210 1.210 12 C 0.324 3.676 13 O -0.298 6.298 14 C -0.167 4.167 15 N -0.105 5.105 16 N -0.066 5.066 17 N -0.060 5.060 18 C -0.045 4.045 19 N -0.124 5.124 20 H 0.051 0.949 21 H 0.037 0.963 22 H 0.117 0.883 23 H 0.072 0.928 24 H 0.119 0.881 25 H 0.128 0.872 26 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.325 0.728 14.135 14.343 hybrid contribution 0.360 -0.682 -0.804 1.114 sum 2.685 0.046 13.331 13.599 Atomic orbital electron populations 1.21658 0.95232 0.99919 1.01650 1.19119 0.94787 0.97734 0.87966 0.91620 1.21102 1.31924 1.12853 0.89189 0.91227 1.24918 0.94917 0.94956 0.99039 1.69890 1.36438 1.22711 1.23620 0.86397 0.78679 0.79713 0.82468 1.19577 1.20899 1.20955 1.22908 0.72952 0.87276 0.84481 1.90432 1.37318 1.17173 1.84844 1.27252 1.01912 0.90977 0.96596 1.76273 1.16116 1.13431 1.04717 1.78911 1.13208 1.11780 1.02698 1.50204 1.39620 1.03963 1.12210 1.22400 1.03417 1.06424 0.72225 1.75224 1.19838 1.17652 0.99694 0.94925 0.96343 0.88289 0.92795 0.88133 0.87226 0.87008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.95 37.16 0.33 -2.75 15 2 C 0.02 0.61 2.45 -92.92 -0.23 0.38 15 3 H 0.07 1.76 8.09 -51.93 -0.42 1.34 15 4 C -0.51 -14.44 8.33 -34.44 -0.29 -14.73 15 5 H 0.07 2.01 7.03 -52.48 -0.37 1.64 15 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 15 7 N -0.89 -25.00 11.32 55.43 0.63 -24.38 15 8 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 15 9 H -0.27 -6.50 7.11 56.52 0.40 -6.10 15 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 12 C 0.45 10.88 6.26 -30.60 -0.19 10.69 15 13 O -0.43 -11.08 16.56 5.60 0.09 -10.99 15 14 C 0.11 2.42 8.05 -156.20 -1.26 1.16 15 15 N -0.23 -4.68 12.37 32.01 0.40 -4.29 15 16 N -0.07 -1.22 13.23 60.35 0.80 -0.42 15 17 N -0.15 -2.15 4.39 -16.64 -0.07 -2.22 15 18 C 0.10 0.66 11.62 59.85 0.70 1.36 15 19 N -0.27 -4.98 12.17 32.02 0.39 -4.59 15 20 H 0.03 0.77 8.14 -51.93 -0.42 0.35 15 21 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 15 22 H 0.10 2.58 6.07 -51.93 -0.32 2.27 15 23 H 0.26 6.99 8.31 -40.82 -0.34 6.65 15 24 H 0.10 0.48 8.14 -51.93 -0.42 0.06 15 25 H 0.11 0.58 8.14 -51.93 -0.42 0.16 15 26 H 0.11 0.49 8.14 -51.93 -0.42 0.06 15 LS Contribution 242.07 15.07 3.65 3.65 Total: -1.00 -32.60 242.07 -2.52 -35.12 By element: Atomic # 1 Polarization: -3.81 SS G_CDS: -2.35 Total: -6.16 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -1.03 Total: -2.23 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 2.14 Total: -35.89 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -32.60 -2.52 -35.12 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697243918.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.437 kcal (2) G-P(sol) polarization free energy of solvation -32.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds