Wall clock time and date at job start Mon Mar 30 2020 02:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47338 * 2 1 4 4 C 1.50703 * 109.46495 * 240.00394 * 2 1 3 5 5 H 1.08007 * 119.99701 * 239.99647 * 4 2 1 6 6 C 1.37876 * 120.00541 * 60.00321 * 4 2 1 7 7 N 1.31516 * 119.99631 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00183 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47495 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47006 * 120.00051 * 8 6 4 11 11 H 1.48495 * 109.47197 * 239.99869 * 8 6 4 12 12 C 1.50697 * 109.47271 * 120.00521 * 2 1 3 13 13 O 1.21233 * 120.00049 * 94.99699 * 12 2 1 14 14 C 1.47359 * 120.00193 * 274.99817 * 12 2 1 15 15 N 1.34365 * 126.72342 * 359.97438 * 14 12 2 16 16 N 1.28980 * 107.23122 * 180.02562 * 15 14 12 17 17 N 1.28710 * 109.04341 * 359.97438 * 16 15 14 18 18 C 1.46506 * 125.29112 * 180.02562 * 17 16 15 19 19 N 1.28869 * 109.41312 * 0.27093 * 17 16 15 20 20 H 1.08999 * 109.47338 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.46864 * 299.99539 * 1 2 3 22 22 H 1.09003 * 109.47208 * 59.99562 * 1 2 3 23 23 H 0.96999 * 119.99998 * 179.97438 * 7 6 4 24 24 H 1.09001 * 109.47060 * 90.03304 * 18 17 16 25 25 H 1.09004 * 109.47073 * 210.02793 * 18 17 16 26 26 H 1.09000 * 109.47212 * 330.02875 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6531 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3222 -1.1194 -4.0080 9 1 3.1481 -2.2856 -3.6040 10 1 1.1675 -1.5863 -4.8165 11 1 3.1470 -0.1857 -4.8161 12 6 2.0324 -0.7105 1.2304 13 8 2.3207 -1.8868 1.1758 14 6 2.1732 0.0245 2.4998 15 7 1.8952 1.3218 2.7121 16 7 2.1537 1.5701 3.9512 17 7 2.5764 0.4935 4.5159 18 6 2.9718 0.3742 5.9215 19 7 2.6027 -0.4618 3.6513 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8900 23 1 0.7087 1.1615 -3.4843 24 1 2.1046 0.0963 6.5206 25 1 3.7411 -0.3920 6.0188 26 1 3.3640 1.3292 6.2710 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697243918.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:36 Heat of formation + Delta-G solvation = 68.840430 kcal Electronic energy + Delta-G solvation = -13474.715451 eV Core-core repulsion = 10977.325711 eV Total energy + Delta-G solvation = -2497.389740 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -45.44964 -40.40735 -36.29895 -35.81261 -34.27782 -32.66352 -29.75646 -27.29464 -26.90120 -24.48890 -23.55006 -21.23282 -18.66677 -18.57450 -18.40694 -17.19717 -16.86482 -15.78439 -15.51730 -15.06000 -14.59133 -14.27717 -14.06936 -13.56601 -13.15994 -12.99714 -12.69256 -12.66130 -12.28768 -12.26600 -12.19652 -12.08300 -11.38708 -11.06545 -10.81730 -10.47495 -8.14217 -6.28471 -0.25853 0.22002 0.97275 1.43864 1.45458 1.58314 1.71604 2.31470 2.50377 3.04895 3.15146 3.81948 4.07122 4.24338 4.41495 4.52602 4.66101 4.75074 4.97522 4.98989 5.04551 5.45367 5.67197 5.90367 6.11843 6.42801 6.77776 7.07727 7.39604 8.92087 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.065233 B = 0.007738 C = 0.007328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.127542 B = 3617.436406 C = 3819.905631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.020 3.980 3 H 0.050 0.950 4 C -0.538 4.538 5 H 0.054 0.946 6 C 0.023 3.977 7 N -0.908 5.908 8 Si 0.961 3.039 9 H -0.274 1.274 10 H -0.274 1.274 11 H -0.274 1.274 12 C 0.460 3.540 13 O -0.458 6.458 14 C 0.091 3.909 15 N -0.257 5.257 16 N -0.066 5.066 17 N -0.118 5.118 18 C 0.072 3.928 19 N -0.269 5.269 20 H 0.029 0.971 21 H 0.038 0.962 22 H 0.080 0.920 23 H 0.267 0.733 24 H 0.131 0.869 25 H 0.131 0.869 26 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.657 0.874 15.289 15.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.000 4.000 3 H 0.068 0.932 4 C -0.576 4.576 5 H 0.072 0.928 6 C -0.177 4.177 7 N -0.546 5.546 8 Si 0.786 3.214 9 H -0.199 1.199 10 H -0.199 1.199 11 H -0.200 1.200 12 C 0.333 3.667 13 O -0.326 6.326 14 C -0.190 4.190 15 N -0.131 5.131 16 N -0.060 5.060 17 N -0.033 5.033 18 C -0.064 4.064 19 N -0.126 5.126 20 H 0.049 0.951 21 H 0.057 0.943 22 H 0.099 0.901 23 H 0.077 0.923 24 H 0.149 0.851 25 H 0.149 0.851 26 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.732 0.815 15.573 15.832 hybrid contribution 0.275 -0.651 -1.015 1.237 sum 3.007 0.165 14.557 14.865 Atomic orbital electron populations 1.21487 0.94437 0.99697 1.01667 1.19017 0.95545 0.96753 0.88640 0.93223 1.21265 1.32628 1.12926 0.90800 0.92783 1.25639 0.94915 0.95591 1.01584 1.69979 1.36680 1.23404 1.24554 0.85452 0.78362 0.78563 0.78982 1.19897 1.19936 1.19970 1.22464 0.72043 0.86808 0.85413 1.90404 1.38527 1.18031 1.85612 1.26394 1.04697 0.91395 0.96513 1.76236 1.17271 1.13200 1.06403 1.78820 1.13245 1.12233 1.01666 1.50866 1.36391 1.02364 1.13686 1.23268 1.05586 1.09257 0.68310 1.75155 1.19534 1.18513 0.99419 0.95136 0.94349 0.90095 0.92344 0.85066 0.85106 0.83804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.69 8.95 71.98 0.64 -5.04 15 2 C 0.02 1.06 2.45 -12.29 -0.03 1.03 15 3 H 0.05 2.75 8.09 -2.39 -0.02 2.74 15 4 C -0.54 -30.99 8.33 25.60 0.21 -30.78 15 5 H 0.05 3.21 7.03 -2.91 -0.02 3.19 15 6 C 0.02 1.27 5.30 84.65 0.45 1.72 15 7 N -0.91 -51.45 11.32 21.45 0.24 -51.21 15 8 Si 0.96 44.26 29.54 68.60 2.03 46.29 15 9 H -0.27 -12.67 7.11 99.48 0.71 -11.96 15 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 15 11 H -0.27 -12.16 7.11 99.48 0.71 -11.45 15 12 C 0.46 22.49 6.26 28.09 0.18 22.66 15 13 O -0.46 -23.96 16.56 -2.88 -0.05 -24.00 15 14 C 0.09 3.82 8.05 136.84 1.10 4.92 15 15 N -0.26 -10.30 12.37 -52.64 -0.65 -10.95 15 16 N -0.07 -2.11 13.23 37.02 0.49 -1.62 15 17 N -0.12 -3.10 4.39 -206.55 -0.91 -4.01 15 18 C 0.07 0.69 11.62 127.77 1.48 2.17 15 19 N -0.27 -9.54 12.17 -52.60 -0.64 -10.18 15 20 H 0.03 1.46 8.14 -2.39 -0.02 1.44 15 21 H 0.04 1.68 8.14 -2.39 -0.02 1.66 15 22 H 0.08 4.29 6.07 -2.39 -0.01 4.28 15 23 H 0.27 14.21 8.31 -92.71 -0.77 13.44 15 24 H 0.13 0.62 8.14 -2.39 -0.02 0.60 15 25 H 0.13 0.82 8.14 -2.38 -0.02 0.80 15 26 H 0.14 0.56 8.14 -2.39 -0.02 0.54 15 Total: -1.00 -70.92 242.07 5.75 -65.17 By element: Atomic # 1 Polarization: -7.38 SS G_CDS: 1.20 Total: -6.18 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: 4.04 Total: -3.32 kcal Atomic # 7 Polarization: -76.49 SS G_CDS: -1.47 Total: -77.96 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.05 Total: -24.00 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -70.92 5.75 -65.17 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697243918.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.010 kcal (2) G-P(sol) polarization free energy of solvation -70.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds