Wall clock time and date at job start Mon Mar 30 2020 02:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28398 * 125.16473 * 2 1 4 4 C 1.30694 * 111.26967 * 180.24604 * 3 2 1 5 5 C 1.40424 * 107.93827 * 359.75219 * 4 3 2 6 6 N 1.39340 * 127.43301 * 180.02562 * 5 4 3 7 7 C 1.37352 * 125.16916 * 179.81761 * 2 1 3 8 8 C 1.46332 * 127.00430 * 0.03084 * 7 2 1 9 9 O 1.21757 * 119.99668 * 99.39235 * 8 7 2 10 10 N 1.34768 * 120.00041 * 279.39297 * 8 7 2 11 11 C 1.36902 * 119.99915 * 174.87725 * 10 8 7 12 12 H 1.07991 * 120.00011 * 359.72394 * 11 10 8 13 13 C 1.39002 * 119.99643 * 179.97438 * 11 10 8 14 14 N 1.31398 * 120.00483 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99349 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46959 * 90.00275 * 15 13 11 17 17 H 1.48504 * 109.46666 * 210.00065 * 15 13 11 18 18 H 1.48495 * 109.47138 * 329.99838 * 15 13 11 19 19 H 1.09008 * 109.46917 * 275.11847 * 1 2 3 20 20 H 1.09000 * 109.47232 * 35.11268 * 1 2 3 21 21 H 1.08996 * 109.47347 * 155.12224 * 1 2 3 22 22 H 1.07998 * 126.03503 * 179.74750 * 4 3 2 23 23 H 0.97000 * 119.99933 * 179.97438 * 6 5 4 24 24 H 0.97003 * 119.99947 * 359.97438 * 6 5 4 25 25 H 0.96998 * 120.00377 * 354.87532 * 10 8 7 26 26 H 0.96998 * 120.00482 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2044 1.0496 0.0000 4 6 3.4731 0.7358 -0.0052 5 6 3.5722 -0.6649 -0.0033 6 7 4.7356 -1.4318 -0.0067 7 6 2.2561 -1.1228 0.0036 8 6 1.8081 -2.5158 0.0074 9 8 1.7861 -3.1510 -1.0312 10 7 1.4200 -3.0957 1.1604 11 6 0.9024 -4.3630 1.1488 12 1 0.8009 -4.8964 0.2153 13 6 0.5025 -4.9613 2.3381 14 7 0.6209 -4.3103 3.4733 15 14 -0.2031 -6.6909 2.3223 16 1 0.8964 -7.6755 2.4859 17 1 -1.1717 -6.8404 3.4381 18 1 -0.8950 -6.9314 1.0306 19 1 -0.3633 0.0917 1.0237 20 1 -0.3634 0.8406 -0.5911 21 1 -0.3634 -0.9323 -0.4323 22 1 4.2996 1.4310 -0.0103 23 1 4.6782 -2.4001 -0.0045 24 1 5.6028 -0.9973 -0.0114 25 1 1.5074 -2.6152 1.9984 26 1 0.3423 -4.7279 4.3033 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725157345.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:40 Heat of formation + Delta-G solvation = 40.520112 kcal Electronic energy + Delta-G solvation = -13631.501766 eV Core-core repulsion = 11132.883965 eV Total energy + Delta-G solvation = -2498.617801 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.69274 -37.85545 -34.57780 -34.00342 -32.03495 -31.25687 -28.83338 -26.19975 -25.16313 -21.94272 -20.76303 -19.12208 -18.07933 -16.94809 -16.12099 -15.51230 -15.31753 -14.79411 -14.05566 -13.98920 -13.42974 -13.00314 -12.56312 -12.36604 -12.08939 -11.63861 -11.16416 -10.58880 -10.46938 -10.33739 -10.24349 -9.62560 -8.75474 -8.44509 -8.09875 -6.85518 -6.53803 -3.94548 2.43559 2.89050 3.14838 3.20657 3.26317 3.34291 3.83634 4.09615 4.45646 4.96575 5.09573 5.17883 5.51171 5.61518 5.77939 5.79326 6.16347 6.26733 6.81839 7.38144 7.43558 7.93312 8.01174 8.27400 8.47931 8.69390 9.03809 9.41084 9.92678 10.62571 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.043632 B = 0.009015 C = 0.008482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.571266 B = 3105.236389 C = 3300.228668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.274 5.274 3 N -0.280 5.280 4 C -0.053 4.053 5 C 0.119 3.881 6 N -0.859 5.859 7 C -0.076 4.076 8 C 0.506 3.494 9 O -0.587 6.587 10 N -0.539 5.539 11 C -0.306 4.306 12 H 0.106 0.894 13 C 0.027 3.973 14 N -0.892 5.892 15 Si 0.933 3.067 16 H -0.276 1.276 17 H -0.282 1.282 18 H -0.268 1.268 19 H 0.080 0.920 20 H 0.088 0.912 21 H 0.094 0.906 22 H 0.176 0.824 23 H 0.401 0.599 24 H 0.396 0.604 25 H 0.395 0.605 26 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.504 6.420 -1.851 7.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.067 5.067 3 N -0.113 5.113 4 C -0.234 4.234 5 C 0.008 3.992 6 N -0.403 5.403 7 C -0.208 4.208 8 C 0.291 3.709 9 O -0.471 6.471 10 N -0.173 5.173 11 C -0.436 4.436 12 H 0.124 0.876 13 C -0.176 4.176 14 N -0.532 5.532 15 Si 0.759 3.241 16 H -0.202 1.202 17 H -0.208 1.208 18 H -0.192 1.192 19 H 0.099 0.901 20 H 0.106 0.894 21 H 0.112 0.888 22 H 0.193 0.807 23 H 0.229 0.771 24 H 0.224 0.776 25 H 0.229 0.771 26 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.448 6.870 -2.336 7.399 hybrid contribution 0.586 -1.389 0.648 1.640 sum 2.034 5.481 -1.689 6.086 Atomic orbital electron populations 1.22004 0.73601 1.04796 1.03947 1.45132 1.06748 1.01767 1.53020 1.72706 1.03485 1.14728 1.20336 1.22948 0.93641 0.92653 1.14180 1.17940 0.86501 0.91011 1.03735 1.41126 1.03546 1.07999 1.87657 1.21009 0.89892 0.89633 1.20225 1.16354 0.85579 0.84026 0.84984 1.90674 1.59557 1.64475 1.32433 1.41909 1.52669 1.15302 1.07448 1.19768 1.37102 0.91255 0.95428 0.87590 1.25349 0.97397 1.00300 0.94571 1.69621 1.46776 1.38338 0.98449 0.85814 0.78730 0.81365 0.78152 1.20200 1.20795 1.19235 0.90127 0.89371 0.88772 0.80733 0.77063 0.77640 0.77131 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.51 11.22 59.84 0.67 2.18 15 2 N -0.27 -5.25 3.77 -63.71 -0.24 -5.49 15 3 N -0.28 -5.14 11.87 30.72 0.36 -4.77 15 4 C -0.05 -0.91 12.05 -17.21 -0.21 -1.11 15 5 C 0.12 2.26 7.48 -83.21 -0.62 1.64 15 6 N -0.86 -13.67 9.12 32.73 0.30 -13.37 15 7 C -0.08 -1.64 6.73 -81.73 -0.55 -2.19 15 8 C 0.51 12.57 6.85 -13.01 -0.09 12.48 15 9 O -0.59 -16.54 16.70 5.14 0.09 -16.45 15 10 N -0.54 -13.76 5.27 -12.27 -0.06 -13.82 15 11 C -0.31 -8.32 9.67 -15.00 -0.15 -8.47 15 12 H 0.11 3.00 7.16 -52.49 -0.38 2.63 15 13 C 0.03 0.70 5.50 -17.45 -0.10 0.61 15 14 N -0.89 -23.74 13.05 55.50 0.72 -23.01 15 15 Si 0.93 20.33 29.55 -169.99 -5.02 15.30 15 16 H -0.28 -5.97 7.11 56.52 0.40 -5.57 15 17 H -0.28 -6.03 7.11 56.52 0.40 -5.62 15 18 H -0.27 -5.80 7.11 56.52 0.40 -5.40 15 19 H 0.08 1.13 8.14 -51.92 -0.42 0.71 15 20 H 0.09 1.10 8.14 -51.93 -0.42 0.68 15 21 H 0.09 1.55 7.67 -51.93 -0.40 1.15 15 22 H 0.18 2.27 8.06 -52.49 -0.42 1.84 15 23 H 0.40 6.79 8.86 -40.82 -0.36 6.43 15 24 H 0.40 4.78 8.96 -40.82 -0.37 4.41 15 25 H 0.39 10.01 7.88 -40.82 -0.32 9.68 15 26 H 0.27 6.88 8.31 -40.82 -0.34 6.54 15 LS Contribution 243.34 15.07 3.67 3.67 Total: -1.00 -31.88 243.34 -3.45 -35.34 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -2.23 Total: 17.48 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: -1.04 Total: 5.13 kcal Atomic # 7 Polarization: -61.55 SS G_CDS: 1.08 Total: -60.47 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: 0.09 Total: -16.45 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -31.88 -3.45 -35.34 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725157345.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.857 kcal (2) G-P(sol) polarization free energy of solvation -31.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds