Wall clock time and date at job start Mon Mar 30 2020 02:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28398 * 125.16473 * 2 1 4 4 C 1.30694 * 111.26967 * 180.24604 * 3 2 1 5 5 C 1.40424 * 107.93827 * 359.75219 * 4 3 2 6 6 N 1.39340 * 127.43301 * 180.02562 * 5 4 3 7 7 C 1.37352 * 125.16916 * 179.81761 * 2 1 3 8 8 C 1.46332 * 127.00430 * 0.03084 * 7 2 1 9 9 O 1.21757 * 119.99668 * 99.39235 * 8 7 2 10 10 N 1.34768 * 120.00041 * 279.39297 * 8 7 2 11 11 C 1.36902 * 119.99915 * 174.87725 * 10 8 7 12 12 H 1.07991 * 120.00011 * 359.72394 * 11 10 8 13 13 C 1.39002 * 119.99643 * 179.97438 * 11 10 8 14 14 N 1.31398 * 120.00483 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99349 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46959 * 90.00275 * 15 13 11 17 17 H 1.48504 * 109.46666 * 210.00065 * 15 13 11 18 18 H 1.48495 * 109.47138 * 329.99838 * 15 13 11 19 19 H 1.09008 * 109.46917 * 275.11847 * 1 2 3 20 20 H 1.09000 * 109.47232 * 35.11268 * 1 2 3 21 21 H 1.08996 * 109.47347 * 155.12224 * 1 2 3 22 22 H 1.07998 * 126.03503 * 179.74750 * 4 3 2 23 23 H 0.97000 * 119.99933 * 179.97438 * 6 5 4 24 24 H 0.97003 * 119.99947 * 359.97438 * 6 5 4 25 25 H 0.96998 * 120.00377 * 354.87532 * 10 8 7 26 26 H 0.96998 * 120.00482 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2044 1.0496 0.0000 4 6 3.4731 0.7358 -0.0052 5 6 3.5722 -0.6649 -0.0033 6 7 4.7356 -1.4318 -0.0067 7 6 2.2561 -1.1228 0.0036 8 6 1.8081 -2.5158 0.0074 9 8 1.7861 -3.1510 -1.0312 10 7 1.4200 -3.0957 1.1604 11 6 0.9024 -4.3630 1.1488 12 1 0.8009 -4.8964 0.2153 13 6 0.5025 -4.9613 2.3381 14 7 0.6209 -4.3103 3.4733 15 14 -0.2031 -6.6909 2.3223 16 1 0.8964 -7.6755 2.4859 17 1 -1.1717 -6.8404 3.4381 18 1 -0.8950 -6.9314 1.0306 19 1 -0.3633 0.0917 1.0237 20 1 -0.3634 0.8406 -0.5911 21 1 -0.3634 -0.9323 -0.4323 22 1 4.2996 1.4310 -0.0103 23 1 4.6782 -2.4001 -0.0045 24 1 5.6028 -0.9973 -0.0114 25 1 1.5074 -2.6152 1.9984 26 1 0.3423 -4.7279 4.3033 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725157345.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:40 Heat of formation + Delta-G solvation = 15.031308 kcal Electronic energy + Delta-G solvation = -13632.607043 eV Core-core repulsion = 11132.883965 eV Total energy + Delta-G solvation = -2499.723079 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.13619 -39.83548 -36.11818 -35.88683 -33.57521 -33.12036 -30.38033 -27.51075 -27.12922 -23.68214 -22.14564 -20.83731 -20.04817 -18.59535 -17.64950 -17.03456 -16.75809 -16.63355 -15.83988 -15.59393 -15.09900 -14.80518 -13.91452 -13.80889 -13.57870 -13.48370 -12.95791 -12.48925 -12.13454 -11.94260 -11.72921 -11.57870 -10.71914 -10.13764 -9.94902 -8.55205 -8.26447 -6.04682 0.90699 1.27210 1.42635 1.52847 1.57593 1.94128 2.07303 2.28110 3.11116 3.14772 3.19219 3.80907 4.18688 4.33006 4.35294 4.58209 4.60783 4.73547 5.34103 5.45810 5.85741 6.01093 6.45426 6.59288 6.99645 7.06926 7.29094 7.40060 7.93918 8.61981 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.043632 B = 0.009015 C = 0.008482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.571266 B = 3105.236389 C = 3300.228668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.279 5.279 3 N -0.276 5.276 4 C -0.046 4.046 5 C 0.123 3.877 6 N -0.848 5.848 7 C -0.125 4.125 8 C 0.516 3.484 9 O -0.629 6.629 10 N -0.540 5.540 11 C -0.340 4.340 12 H 0.086 0.914 13 C -0.005 4.005 14 N -0.912 5.912 15 Si 0.999 3.001 16 H -0.269 1.269 17 H -0.269 1.269 18 H -0.269 1.269 19 H 0.092 0.908 20 H 0.119 0.881 21 H 0.075 0.925 22 H 0.219 0.781 23 H 0.396 0.604 24 H 0.416 0.584 25 H 0.394 0.606 26 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.941 7.121 -1.399 7.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.073 5.073 3 N -0.109 5.109 4 C -0.227 4.227 5 C 0.010 3.990 6 N -0.393 5.393 7 C -0.255 4.255 8 C 0.302 3.698 9 O -0.516 6.516 10 N -0.174 5.174 11 C -0.469 4.469 12 H 0.104 0.896 13 C -0.207 4.207 14 N -0.552 5.552 15 Si 0.821 3.179 16 H -0.195 1.195 17 H -0.194 1.194 18 H -0.193 1.193 19 H 0.110 0.890 20 H 0.138 0.862 21 H 0.094 0.906 22 H 0.235 0.765 23 H 0.223 0.777 24 H 0.247 0.753 25 H 0.228 0.772 26 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.909 7.592 -1.864 8.047 hybrid contribution 0.514 -1.528 0.508 1.691 sum 2.423 6.064 -1.356 6.670 Atomic orbital electron populations 1.22207 0.72218 1.05201 1.05202 1.45319 1.07633 1.01039 1.53311 1.72705 1.04167 1.14303 1.19688 1.23612 0.94216 0.92242 1.12625 1.18267 0.86272 0.92204 1.02246 1.41164 1.03866 1.07712 1.86536 1.20651 0.91611 0.88679 1.24564 1.16713 0.83987 0.85192 0.83913 1.90626 1.61092 1.66169 1.33702 1.41909 1.52833 1.14993 1.07662 1.19776 1.39452 0.92342 0.95373 0.89573 1.26167 0.96844 1.03918 0.93722 1.69685 1.46687 1.39834 0.98976 0.84846 0.78232 0.76472 0.78303 1.19472 1.19409 1.19342 0.88966 0.86228 0.90591 0.76468 0.77699 0.75305 0.77195 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.79 11.22 127.77 1.43 4.22 15 2 N -0.28 -10.46 3.77 -355.47 -1.34 -11.80 15 3 N -0.28 -9.50 11.87 -56.73 -0.67 -10.18 15 4 C -0.05 -1.42 12.05 85.39 1.03 -0.39 15 5 C 0.12 4.48 7.48 38.75 0.29 4.77 15 6 N -0.85 -25.66 9.12 -50.37 -0.46 -26.12 15 7 C -0.12 -5.36 6.73 40.65 0.27 -5.08 15 8 C 0.52 26.30 6.85 86.35 0.59 26.89 15 9 O -0.63 -36.65 16.70 -4.53 -0.08 -36.73 15 10 N -0.54 -28.35 5.27 -310.92 -1.64 -29.99 15 11 C -0.34 -18.97 9.67 84.08 0.81 -18.16 15 12 H 0.09 5.07 7.16 -2.92 -0.02 5.05 15 13 C -0.01 -0.26 5.50 84.94 0.47 0.20 15 14 N -0.91 -48.33 13.05 21.67 0.28 -48.05 15 15 Si 1.00 41.35 29.55 68.60 2.03 43.38 15 16 H -0.27 -10.85 7.11 99.48 0.71 -10.14 15 17 H -0.27 -10.54 7.11 99.48 0.71 -9.83 15 18 H -0.27 -11.11 7.11 99.48 0.71 -10.40 15 19 H 0.09 2.54 8.14 -2.38 -0.02 2.52 15 20 H 0.12 2.79 8.14 -2.39 -0.02 2.77 15 21 H 0.08 2.56 7.67 -2.39 -0.02 2.54 15 22 H 0.22 4.62 8.06 -2.91 -0.02 4.60 15 23 H 0.40 13.18 8.86 -92.71 -0.82 12.36 15 24 H 0.42 8.98 8.96 -92.71 -0.83 8.15 15 25 H 0.39 20.46 7.88 -92.71 -0.73 19.73 15 26 H 0.28 13.86 8.31 -92.71 -0.77 13.09 15 Total: -1.00 -68.47 243.34 1.89 -66.58 By element: Atomic # 1 Polarization: 41.59 SS G_CDS: -1.13 Total: 40.45 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: 4.90 Total: 12.44 kcal Atomic # 7 Polarization: -122.30 SS G_CDS: -3.83 Total: -126.13 kcal Atomic # 8 Polarization: -36.65 SS G_CDS: -0.08 Total: -36.73 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -68.47 1.89 -66.58 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725157345.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.613 kcal (2) G-P(sol) polarization free energy of solvation -68.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds