Wall clock time and date at job start Mon Mar 30 2020 02:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40025 * 126.08351 * 2 1 4 4 C 1.31352 * 108.77647 * 180.02562 * 3 2 1 5 5 N 1.40019 * 125.68341 * 180.02562 * 4 3 2 6 6 C 1.39811 * 108.63496 * 359.77435 * 4 3 2 7 7 C 1.36725 * 126.07814 * 180.02562 * 2 1 3 8 8 C 1.47037 * 126.43370 * 359.94269 * 7 2 1 9 9 O 1.21671 * 119.99752 * 5.30298 * 8 7 2 10 10 N 1.34778 * 119.99759 * 185.30023 * 8 7 2 11 11 C 1.36840 * 119.99686 * 174.95427 * 10 8 7 12 12 H 1.08002 * 120.00021 * 0.27391 * 11 10 8 13 13 C 1.39048 * 119.99955 * 180.27901 * 11 10 8 14 14 N 1.31369 * 119.99939 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00058 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.46871 * 90.00379 * 15 13 11 17 17 H 1.48503 * 109.47182 * 210.00087 * 15 13 11 18 18 H 1.48495 * 109.47287 * 330.00453 * 15 13 11 19 19 H 1.08998 * 109.46734 * 274.59872 * 1 2 3 20 20 H 1.08998 * 109.47142 * 34.59902 * 1 2 3 21 21 H 1.09004 * 109.47508 * 154.59969 * 1 2 3 22 22 H 0.96993 * 119.99850 * 359.97438 * 5 4 3 23 23 H 0.97000 * 119.99767 * 179.97438 * 5 4 3 24 24 H 1.07990 * 126.19685 * 180.23220 * 6 4 3 25 25 H 0.97001 * 120.00100 * 355.23345 * 10 8 7 26 26 H 0.96997 * 119.99666 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2897 1.1316 0.0000 4 6 3.5437 0.7409 -0.0006 5 7 4.6619 1.5837 -0.0002 6 6 3.5762 -0.6569 0.0043 7 6 2.2702 -1.1050 -0.0005 8 6 1.8283 -2.5074 0.0001 9 8 0.6447 -2.7723 -0.0963 10 7 2.7344 -3.4994 0.1073 11 6 2.3175 -4.7985 0.2118 12 1 1.2624 -5.0293 0.2039 13 6 3.2521 -5.8214 0.3283 14 7 2.8518 -7.0686 0.4281 15 14 5.0769 -5.4222 0.3414 16 1 5.5231 -5.1919 1.7389 17 1 5.8363 -6.5584 -0.2398 18 1 5.3219 -4.1992 -0.4644 19 1 -0.3633 0.0824 1.0244 20 1 -0.3633 0.8459 -0.5835 21 1 -0.3634 -0.9283 -0.4408 22 1 4.5435 2.5464 0.0001 23 1 5.5548 1.2048 -0.0003 24 1 4.4622 -1.2742 0.0086 25 1 3.6820 -3.2920 0.1145 26 1 3.5038 -7.7821 0.5097 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725176943.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:42 Heat of formation + Delta-G solvation = 22.903641 kcal Electronic energy + Delta-G solvation = -13466.668057 eV Core-core repulsion = 10967.286348 eV Total energy + Delta-G solvation = -2499.381709 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.09899 -39.91456 -36.37862 -35.61442 -34.00591 -32.31966 -31.26913 -27.33221 -26.86039 -23.82194 -21.58637 -21.28366 -20.25650 -18.24393 -17.63581 -17.03258 -16.65603 -16.28979 -16.05598 -15.27690 -15.11513 -14.84303 -14.42416 -14.26495 -13.91040 -13.19571 -13.03905 -12.48016 -12.01118 -11.70622 -11.67813 -11.57681 -10.70609 -10.38488 -9.83381 -8.79669 -8.51471 -6.09732 0.22100 1.31386 1.36925 1.38087 1.45525 1.82144 2.18498 2.29913 2.59136 3.07541 3.13613 3.69396 4.02163 4.41919 4.44436 4.53698 4.71067 4.80096 5.36633 5.42726 5.81821 5.88719 6.35598 6.51021 6.58055 6.70812 7.19923 7.31287 7.70679 8.63926 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.036771 B = 0.009991 C = 0.007897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.284317 B = 2801.893740 C = 3544.823658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.354 5.354 3 N -0.361 5.361 4 C 0.332 3.668 5 N -0.827 5.827 6 C -0.284 4.284 7 C 0.070 3.930 8 C 0.499 3.501 9 O -0.613 6.613 10 N -0.548 5.548 11 C -0.331 4.331 12 H 0.068 0.932 13 C -0.001 4.001 14 N -0.912 5.912 15 Si 0.954 3.046 16 H -0.251 1.251 17 H -0.267 1.267 18 H -0.231 1.231 19 H 0.079 0.921 20 H 0.104 0.896 21 H 0.091 0.909 22 H 0.411 0.589 23 H 0.423 0.577 24 H 0.170 0.830 25 H 0.393 0.607 26 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.905 14.320 -0.490 16.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.137 5.137 3 N -0.197 5.197 4 C 0.074 3.926 5 N -0.382 5.382 6 C -0.318 4.318 7 C -0.062 4.062 8 C 0.286 3.714 9 O -0.500 6.500 10 N -0.187 5.187 11 C -0.460 4.460 12 H 0.087 0.913 13 C -0.203 4.203 14 N -0.550 5.550 15 Si 0.773 3.227 16 H -0.175 1.175 17 H -0.192 1.192 18 H -0.155 1.155 19 H 0.097 0.903 20 H 0.123 0.877 21 H 0.109 0.891 22 H 0.241 0.759 23 H 0.255 0.745 24 H 0.188 0.812 25 H 0.229 0.771 26 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.160 14.814 -0.519 16.052 hybrid contribution 1.327 -0.901 0.055 1.605 sum 7.488 13.912 -0.464 15.806 Atomic orbital electron populations 1.22132 0.72457 1.05303 1.04106 1.48429 1.06962 1.01185 1.57148 1.77199 1.00288 1.06808 1.35358 1.19136 0.88512 0.89725 0.95266 1.41255 1.03137 1.07403 1.86374 1.21606 0.95809 0.93955 1.20442 1.21025 0.91788 0.88943 1.04433 1.16969 0.85863 0.83610 0.84962 1.90607 1.17875 1.84310 1.57218 1.41676 1.08149 1.05470 1.63365 1.19085 0.95357 0.81466 1.50139 0.91348 1.26105 1.05077 0.93998 0.95117 1.69740 1.37915 1.00492 1.46867 0.85515 0.76187 0.80353 0.80655 1.17520 1.19179 1.15461 0.90279 0.87722 0.89060 0.75921 0.74462 0.81221 0.77058 0.90443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.20 11.14 127.77 1.42 4.62 15 2 N -0.35 -13.15 4.06 -356.33 -1.45 -14.60 15 3 N -0.36 -12.33 12.56 -54.86 -0.69 -13.02 15 4 C 0.33 9.88 8.40 133.19 1.12 10.99 15 5 N -0.83 -15.54 9.15 -54.91 -0.50 -16.04 15 6 C -0.28 -9.26 10.34 22.61 0.23 -9.02 15 7 C 0.07 2.80 6.95 40.65 0.28 3.09 15 8 C 0.50 24.01 7.74 86.55 0.67 24.68 15 9 O -0.61 -33.67 14.20 -4.26 -0.06 -33.73 15 10 N -0.55 -26.26 5.07 -310.33 -1.57 -27.84 15 11 C -0.33 -18.81 10.16 84.11 0.85 -17.96 15 12 H 0.07 4.56 7.39 -2.91 -0.02 4.54 15 13 C 0.00 -0.05 5.50 84.96 0.47 0.42 15 14 N -0.91 -52.19 13.95 21.68 0.30 -51.89 15 15 Si 0.95 36.70 27.74 68.60 1.90 38.60 15 16 H -0.25 -9.11 7.11 99.48 0.71 -8.40 15 17 H -0.27 -10.07 7.11 99.48 0.71 -9.36 15 18 H -0.23 -7.58 6.52 99.48 0.65 -6.93 15 19 H 0.08 2.29 8.14 -2.39 -0.02 2.27 15 20 H 0.10 2.66 8.14 -2.39 -0.02 2.64 15 21 H 0.09 3.32 6.03 -2.38 -0.01 3.31 15 22 H 0.41 6.27 8.96 -92.71 -0.83 5.44 15 23 H 0.42 5.50 8.96 -92.71 -0.83 4.67 15 24 H 0.17 4.54 7.46 -2.92 -0.02 4.52 15 25 H 0.39 15.84 4.69 -92.71 -0.43 15.41 15 26 H 0.29 14.81 8.31 -92.71 -0.77 14.04 15 Total: -1.00 -71.65 235.77 2.08 -69.57 By element: Atomic # 1 Polarization: 33.04 SS G_CDS: -0.90 Total: 32.14 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: 5.05 Total: 16.81 kcal Atomic # 7 Polarization: -119.48 SS G_CDS: -3.91 Total: -123.39 kcal Atomic # 8 Polarization: -33.67 SS G_CDS: -0.06 Total: -33.73 kcal Atomic # 14 Polarization: 36.70 SS G_CDS: 1.90 Total: 38.60 kcal Total: -71.65 2.08 -69.57 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725176943.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.474 kcal (2) G-P(sol) polarization free energy of solvation -71.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds