Wall clock time and date at job start Mon Mar 30 2020 02:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40055 * 125.95146 * 2 1 4 4 C 1.31918 * 108.27215 * 179.73789 * 3 2 1 5 5 C 1.47620 * 125.96682 * 180.02562 * 4 3 2 6 6 O 1.21608 * 119.99702 * 179.97438 * 5 4 3 7 7 N 1.34775 * 119.99972 * 359.97305 * 5 4 3 8 8 C 1.36909 * 119.99817 * 180.02562 * 7 5 4 9 9 H 1.08004 * 120.00246 * 359.97438 * 8 7 5 10 10 C 1.39019 * 120.00003 * 180.02562 * 8 7 5 11 11 N 1.31381 * 120.00394 * 180.02562 * 10 8 7 12 12 Si 1.86807 * 119.99918 * 359.97438 * 10 8 7 13 13 H 1.48495 * 109.46977 * 90.00222 * 12 10 8 14 14 H 1.48497 * 109.47176 * 210.00066 * 12 10 8 15 15 H 1.48500 * 109.47026 * 330.00439 * 12 10 8 16 16 C 1.41063 * 108.06408 * 359.97438 * 4 3 2 17 17 C 1.35800 * 107.77984 * 0.02562 * 16 4 3 18 18 N 1.39238 * 126.10938 * 179.97438 * 17 16 4 19 19 H 1.09005 * 109.46874 * 90.02770 * 1 2 3 20 20 H 1.08997 * 109.47343 * 210.02089 * 1 2 3 21 21 H 1.08997 * 109.46981 * 330.02702 * 1 2 3 22 22 H 0.97001 * 120.00031 * 359.97438 * 7 5 4 23 23 H 0.96996 * 120.00527 * 179.97438 * 11 10 8 24 24 H 1.08000 * 126.11302 * 179.97438 * 16 4 3 25 25 H 0.97002 * 119.99796 * 179.97438 * 18 17 16 26 26 H 0.97005 * 120.00163 * 0.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2873 1.1338 0.0000 4 6 3.5441 0.7332 0.0057 5 6 4.7330 1.6082 0.0083 6 8 5.8470 1.1204 0.0142 7 7 4.5839 2.9477 0.0042 8 6 5.6865 3.7592 0.0060 9 1 6.6759 3.3260 0.0113 10 6 5.5327 5.1409 0.0023 11 7 6.5908 5.9197 0.0036 12 14 3.8215 5.8901 -0.0060 13 1 3.3628 6.0919 1.3918 14 1 3.8571 7.1977 -0.7089 15 1 2.8844 4.9763 -0.7075 16 6 3.5536 -0.6774 0.0102 17 6 2.2633 -1.1008 0.0063 18 7 1.8343 -2.4254 0.0082 19 1 -0.3633 -0.0005 -1.0277 20 1 -0.3634 -0.8898 0.5141 21 1 -0.3633 0.8902 0.5134 22 1 3.6953 3.3367 -0.0009 23 1 6.4835 6.8837 0.0006 24 1 4.4303 -1.3081 0.0149 25 1 0.8857 -2.6280 0.0054 26 1 2.4841 -3.1457 0.0130 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725180208.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:37 Heat of formation + Delta-G solvation = 20.688587 kcal Electronic energy + Delta-G solvation = -13312.910361 eV Core-core repulsion = 10813.432601 eV Total energy + Delta-G solvation = -2499.477761 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.14843 -39.97174 -36.13894 -35.57556 -33.99929 -33.71879 -29.44550 -28.42174 -26.72621 -23.66982 -21.63292 -21.12218 -20.26406 -18.57644 -17.39463 -17.17277 -16.72096 -16.64795 -15.54706 -15.46114 -15.43438 -14.69440 -14.37130 -14.01954 -13.59025 -13.27206 -13.05119 -12.48934 -12.04323 -12.00806 -11.75388 -11.61459 -10.82040 -10.35233 -9.89125 -8.74105 -8.50713 -6.08315 0.51588 1.29120 1.31298 1.39406 1.41744 1.47880 2.17096 2.45264 2.57892 3.09726 3.17872 3.50688 4.14428 4.44400 4.49187 4.63712 4.71350 4.88280 5.38918 5.52507 5.65751 5.85593 6.27887 6.51449 6.58240 6.74917 7.02888 7.27887 7.78803 8.65473 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.046286 B = 0.008668 C = 0.007330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.794619 B = 3229.329586 C = 3818.980433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.391 5.391 3 N -0.311 5.311 4 C 0.061 3.939 5 C 0.516 3.484 6 O -0.612 6.612 7 N -0.562 5.562 8 C -0.334 4.334 9 H 0.069 0.931 10 C 0.000 4.000 11 N -0.914 5.914 12 Si 0.954 3.046 13 H -0.253 1.253 14 H -0.260 1.260 15 H -0.246 1.246 16 C -0.322 4.322 17 C 0.376 3.624 18 N -0.828 5.828 19 H 0.089 0.911 20 H 0.118 0.882 21 H 0.094 0.906 22 H 0.391 0.609 23 H 0.285 0.715 24 H 0.147 0.853 25 H 0.416 0.584 26 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.352 -13.500 0.061 23.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.183 5.183 3 N -0.140 5.140 4 C -0.104 4.104 5 C 0.302 3.698 6 O -0.497 6.497 7 N -0.200 5.200 8 C -0.463 4.463 9 H 0.087 0.913 10 C -0.202 4.202 11 N -0.553 5.553 12 Si 0.774 3.226 13 H -0.177 1.177 14 H -0.184 1.184 15 H -0.170 1.170 16 C -0.358 4.358 17 C 0.148 3.852 18 N -0.381 5.381 19 H 0.108 0.892 20 H 0.136 0.864 21 H 0.113 0.887 22 H 0.227 0.773 23 H 0.095 0.905 24 H 0.165 0.835 25 H 0.247 0.753 26 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -19.395 -12.530 0.055 23.091 hybrid contribution 0.166 -0.225 -0.016 0.280 sum -19.229 -12.755 0.039 23.075 Atomic orbital electron populations 1.22248 0.71438 1.06282 1.04901 1.48801 1.07539 1.01386 1.60580 1.77607 1.00324 1.07410 1.28700 1.21667 0.91442 0.94880 1.02461 1.17133 0.87151 0.81756 0.83730 1.90599 1.26611 1.75155 1.57303 1.41959 1.08441 1.05199 1.64427 1.19154 0.87529 0.88910 1.50726 0.91296 1.26016 1.03302 0.95431 0.95401 1.69740 1.31758 1.05680 1.48109 0.85504 0.77475 0.79233 0.80371 1.17718 1.18432 1.17023 1.20521 0.96274 0.92758 1.26244 1.17777 0.88647 0.83406 0.95406 1.41408 1.11722 0.99665 1.85335 0.89237 0.86421 0.88742 0.77327 0.90505 0.83508 0.75269 0.73893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.27 11.28 127.77 1.44 2.71 15 2 N -0.39 -10.64 4.04 -366.33 -1.48 -12.12 15 3 N -0.31 -12.05 12.26 -48.47 -0.59 -12.65 15 4 C 0.06 2.72 7.09 42.30 0.30 3.02 15 5 C 0.52 28.29 7.77 86.72 0.67 28.97 15 6 O -0.61 -38.05 16.47 -4.06 -0.07 -38.12 15 7 N -0.56 -30.98 5.08 -309.81 -1.57 -32.56 15 8 C -0.33 -20.86 10.16 84.09 0.85 -20.01 15 9 H 0.07 4.95 7.38 -2.91 -0.02 4.93 15 10 C 0.00 0.00 5.50 84.95 0.47 0.46 15 11 N -0.91 -55.62 13.95 21.68 0.30 -55.32 15 12 Si 0.95 41.80 27.74 68.60 1.90 43.70 15 13 H -0.25 -10.48 7.11 99.48 0.71 -9.77 15 14 H -0.26 -10.75 7.11 99.48 0.71 -10.04 15 15 H -0.25 -10.05 6.52 99.48 0.65 -9.40 15 16 C -0.32 -11.80 10.60 22.40 0.24 -11.56 15 17 C 0.38 9.85 7.97 131.10 1.04 10.89 15 18 N -0.83 -11.04 9.11 -55.28 -0.50 -11.55 15 19 H 0.09 0.98 8.14 -2.38 -0.02 0.96 15 20 H 0.12 0.71 7.49 -2.39 -0.02 0.69 15 21 H 0.09 1.33 8.14 -2.39 -0.02 1.31 15 22 H 0.39 19.34 5.45 -92.71 -0.51 18.83 15 23 H 0.29 15.67 8.31 -92.71 -0.77 14.90 15 24 H 0.15 5.29 8.06 -2.91 -0.02 5.27 15 25 H 0.42 2.62 8.09 -92.71 -0.75 1.87 15 26 H 0.43 4.32 8.96 -92.70 -0.83 3.49 15 Total: -1.00 -83.19 239.77 2.11 -81.08 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: -0.90 Total: 23.04 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: 5.02 Total: 14.48 kcal Atomic # 7 Polarization: -120.34 SS G_CDS: -3.85 Total: -124.19 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -0.07 Total: -38.12 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 1.90 Total: 43.70 kcal Total: -83.19 2.11 -81.08 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725180208.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.771 kcal (2) G-P(sol) polarization free energy of solvation -83.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds