Wall clock time and date at job start Mon Mar 30 2020 02:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.35893 * 124.89749 * 2 1 4 4 C 1.35930 * 107.06834 * 179.72381 * 3 2 1 5 5 N 1.40261 * 127.28803 * 180.23646 * 4 3 2 6 6 C 1.41918 * 105.42536 * 0.38248 * 4 3 2 7 7 C 1.47367 * 126.47289 * 179.87560 * 6 4 3 8 8 O 1.21633 * 119.99963 * 359.71196 * 7 6 4 9 9 N 1.34777 * 120.00001 * 179.43812 * 7 6 4 10 10 C 1.36922 * 119.99977 * 180.27585 * 9 7 6 11 11 H 1.08002 * 120.00307 * 0.02562 * 10 9 7 12 12 C 1.39014 * 119.99914 * 179.97438 * 10 9 7 13 13 N 1.31384 * 120.00142 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 119.99756 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47461 * 60.00119 * 14 12 10 16 16 H 1.48498 * 109.47176 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47413 * 299.99753 * 14 12 10 18 18 N 1.28441 * 124.89766 * 179.97438 * 2 1 3 19 19 H 1.08998 * 109.46911 * 269.99996 * 1 2 3 20 20 H 1.09000 * 109.47249 * 29.99708 * 1 2 3 21 21 H 1.08999 * 109.47259 * 150.00287 * 1 2 3 22 22 H 1.08006 * 126.46324 * 359.94737 * 3 2 1 23 23 H 0.97001 * 120.00151 * 180.17551 * 5 4 3 24 24 H 0.96998 * 120.00103 * 0.17506 * 5 4 3 25 25 H 0.97000 * 119.99736 * 0.27087 * 9 7 6 26 26 H 0.96996 * 120.00316 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2425 1.1146 0.0000 4 6 3.5365 0.6984 0.0063 5 7 4.6871 1.5005 0.0132 6 6 3.4770 -0.7195 0.0008 7 6 4.6243 -1.6445 0.0018 8 8 5.7589 -1.2061 0.0025 9 7 4.4164 -2.9761 0.0075 10 6 5.4823 -3.8354 0.0141 11 1 6.4898 -3.4462 0.0152 12 6 5.2678 -5.2089 0.0206 13 7 4.0423 -5.6824 0.0209 14 14 6.7221 -6.3812 0.0304 15 1 7.5437 -6.1407 1.2438 16 1 6.2288 -7.7818 0.0356 17 1 7.5500 -6.1531 -1.1812 18 7 2.1999 -1.0534 0.0005 19 1 -0.3633 0.0000 1.0277 20 1 -0.3634 0.8900 -0.5138 21 1 -0.3634 -0.8900 -0.5138 22 1 1.8973 2.1380 -0.0008 23 1 5.5654 1.0888 0.0147 24 1 4.6045 2.4670 0.0165 25 1 3.5115 -3.3256 0.0070 26 1 3.8926 -6.6408 0.0250 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725213618.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:39 Heat of formation + Delta-G solvation = 41.961446 kcal Electronic energy + Delta-G solvation = -13410.025308 eV Core-core repulsion = 10911.470008 eV Total energy + Delta-G solvation = -2498.555300 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.79884 -37.71654 -34.53178 -33.68350 -32.19883 -30.98496 -28.63465 -26.88723 -24.73244 -21.82041 -20.61588 -19.07762 -17.87938 -16.75812 -15.81382 -15.68354 -15.50505 -14.64764 -14.29578 -13.84333 -13.37622 -12.78163 -12.63205 -12.39050 -12.17108 -11.48977 -11.03085 -10.52921 -10.40033 -10.30939 -10.08484 -9.48088 -8.52258 -8.51159 -7.91533 -6.92467 -6.38240 -3.74489 2.35919 2.99352 3.00227 3.28986 3.30986 3.33782 4.20583 4.50402 4.53739 4.92541 5.11004 5.23773 5.35039 5.45341 5.47599 5.78363 6.02603 6.33478 6.89195 7.36027 7.57800 8.08338 8.10679 8.39509 8.62296 8.75292 9.20931 9.64115 10.15755 10.78843 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.045502 B = 0.008423 C = 0.007135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.215237 B = 3323.321693 C = 3923.373033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.294 5.294 3 C -0.128 4.128 4 C 0.143 3.857 5 N -0.859 5.859 6 C -0.028 4.028 7 C 0.517 3.483 8 O -0.601 6.601 9 N -0.537 5.537 10 C -0.299 4.299 11 H 0.106 0.894 12 C 0.024 3.976 13 N -0.891 5.891 14 Si 0.934 3.066 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.273 1.273 18 N -0.253 5.253 19 H 0.075 0.925 20 H 0.086 0.914 21 H 0.091 0.909 22 H 0.168 0.832 23 H 0.413 0.587 24 H 0.388 0.612 25 H 0.401 0.599 26 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.189 10.513 -0.077 12.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.086 5.086 3 C -0.273 4.273 4 C 0.031 3.969 5 N -0.405 5.405 6 C -0.192 4.192 7 C 0.303 3.697 8 O -0.487 6.487 9 N -0.171 5.171 10 C -0.429 4.429 11 H 0.124 0.876 12 C -0.179 4.179 13 N -0.531 5.531 14 Si 0.761 3.239 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.198 1.198 18 N -0.090 5.090 19 H 0.094 0.906 20 H 0.105 0.895 21 H 0.110 0.890 22 H 0.185 0.815 23 H 0.245 0.755 24 H 0.215 0.785 25 H 0.235 0.765 26 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.406 9.605 -0.076 12.129 hybrid contribution 0.699 0.191 0.022 0.725 sum -6.707 9.796 -0.054 11.873 Atomic orbital electron populations 1.21916 0.74140 1.04542 1.03514 1.44766 1.06747 1.02755 1.54345 1.21698 0.89564 0.92996 1.23070 1.17672 0.87531 0.89978 1.01756 1.41598 1.05492 1.06292 1.87141 1.22091 0.91177 0.92488 1.13437 1.16398 0.85860 0.81936 0.85525 1.90523 1.22232 1.76975 1.58943 1.41750 1.10247 1.03777 1.61277 1.19748 0.89068 0.86686 1.47398 0.87639 1.25351 0.97804 0.97718 0.97059 1.69633 1.19824 1.14651 1.49004 0.85873 0.80509 0.78426 0.79134 1.19782 1.20935 1.19785 1.73547 1.02724 1.13763 1.18960 0.90643 0.89536 0.89034 0.81513 0.75460 0.78497 0.76489 0.91657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.02 11.32 59.85 0.68 1.70 15 2 N -0.29 -4.79 3.72 -67.74 -0.25 -5.04 15 3 C -0.13 -2.01 11.53 -16.58 -0.19 -2.20 15 4 C 0.14 2.74 7.37 -83.42 -0.61 2.13 15 5 N -0.86 -14.32 9.15 32.57 0.30 -14.02 15 6 C -0.03 -0.65 7.13 -82.67 -0.59 -1.24 15 7 C 0.52 13.91 7.76 -12.55 -0.10 13.81 15 8 O -0.60 -17.06 14.93 5.25 0.08 -16.98 15 9 N -0.54 -15.07 5.28 -11.97 -0.06 -15.13 15 10 C -0.30 -8.70 9.68 -14.99 -0.15 -8.85 15 11 H 0.11 3.14 7.15 -52.49 -0.38 2.76 15 12 C 0.02 0.66 5.50 -17.46 -0.10 0.56 15 13 N -0.89 -25.19 13.05 55.50 0.72 -24.47 15 14 Si 0.93 21.40 29.55 -169.99 -5.02 16.38 15 15 H -0.27 -6.17 7.11 56.52 0.40 -5.77 15 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 17 H -0.27 -6.17 7.11 56.52 0.40 -5.77 15 18 N -0.25 -5.32 11.65 33.46 0.39 -4.93 15 19 H 0.08 0.65 8.14 -51.93 -0.42 0.23 15 20 H 0.09 0.60 8.13 -51.93 -0.42 0.18 15 21 H 0.09 0.90 8.14 -51.93 -0.42 0.48 15 22 H 0.17 1.88 8.06 -52.48 -0.42 1.45 15 23 H 0.41 7.69 7.27 -40.82 -0.30 7.39 15 24 H 0.39 4.84 8.96 -40.82 -0.37 4.47 15 25 H 0.40 11.18 7.61 -40.82 -0.31 10.86 15 26 H 0.27 7.24 8.31 -40.82 -0.34 6.90 15 LS Contribution 240.72 15.07 3.63 3.63 Total: -1.00 -33.95 240.72 -3.45 -37.40 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -2.17 Total: 17.27 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -1.06 Total: 5.91 kcal Atomic # 7 Polarization: -64.69 SS G_CDS: 1.10 Total: -63.59 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: 0.08 Total: -16.98 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -33.95 -3.45 -37.40 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725213618.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.358 kcal (2) G-P(sol) polarization free energy of solvation -33.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds