Wall clock time and date at job start Mon Mar 30 2020 02:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86803 * 119.99893 * 2 1 4 4 H 1.48501 * 109.46950 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47074 * 299.99928 * 3 2 1 6 6 H 1.48505 * 109.46997 * 59.99922 * 3 2 1 7 7 C 1.38948 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00263 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99682 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99944 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99983 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00037 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.46928 * 179.97438 * 12 10 9 14 14 C 1.34934 * 126.39718 * 269.68382 * 13 12 10 15 15 N 1.30589 * 108.85655 * 179.88626 * 14 13 12 16 16 C 1.34339 * 109.34676 * 0.38741 * 15 14 13 17 17 N 1.40447 * 126.04792 * 179.74048 * 16 15 14 18 18 C 1.35198 * 107.91334 * 359.76219 * 16 15 14 19 19 H 0.97002 * 120.00016 * 0.02562 * 1 2 3 20 20 H 0.96996 * 120.00211 * 359.97438 * 9 7 2 21 21 H 1.09004 * 109.47103 * 59.99751 * 12 10 9 22 22 H 1.09000 * 109.47247 * 299.99628 * 12 10 9 23 23 H 1.08003 * 125.56865 * 0.04080 * 14 13 12 24 24 H 0.96991 * 120.00564 * 180.02562 * 17 16 15 25 25 H 0.97011 * 119.99333 * 0.02562 * 17 16 15 26 26 H 1.08003 * 126.66643 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0890 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0022 13 7 2.1959 -5.9764 0.0027 14 6 2.7117 -6.5894 -1.0832 15 7 3.5244 -7.5326 -0.6892 16 6 3.5523 -7.5639 0.6535 17 7 4.3062 -8.4464 1.4442 18 6 2.7258 -6.5958 1.1093 19 1 -0.4850 0.8401 -0.0004 20 1 0.3535 -2.3906 0.0005 21 1 0.6175 -4.9212 -0.8880 22 1 0.6169 -4.9201 0.8920 23 1 2.4905 -6.3390 -2.1102 24 1 4.2597 -8.3915 2.4114 25 1 4.8735 -9.1110 1.0228 26 1 2.5220 -6.3555 2.1423 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725248765.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:30 Heat of formation + Delta-G solvation = 7.604284 kcal Electronic energy + Delta-G solvation = -13217.303844 eV Core-core repulsion = 10717.258706 eV Total energy + Delta-G solvation = -2500.045139 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.78676 -40.05160 -36.19333 -35.53003 -33.66263 -33.23144 -29.76710 -28.28649 -26.38760 -22.59344 -21.67420 -21.23681 -20.05416 -18.14333 -18.07275 -17.05409 -16.65110 -16.27742 -15.76630 -15.63109 -15.44000 -14.58121 -14.38491 -14.17122 -13.55904 -13.24169 -12.87050 -12.46345 -12.14709 -11.81238 -11.58163 -10.94153 -10.63465 -10.08739 -10.07416 -8.52543 -8.20360 -6.01213 1.20454 1.33456 1.41942 1.54850 1.92360 1.95952 2.28926 2.42150 3.05835 3.14287 3.17506 3.97600 4.08841 4.21455 4.29988 4.34941 4.68426 5.37389 5.42034 5.54920 5.90395 6.28922 6.52359 6.80933 6.84708 7.06464 7.45632 7.55421 8.01035 8.64353 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.072015 B = 0.006431 C = 0.006236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.717243 B = 4353.184400 C = 4488.735680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.005 4.005 3 Si 0.990 3.010 4 H -0.277 1.277 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.336 4.336 8 H 0.075 0.925 9 N -0.559 5.559 10 C 0.418 3.582 11 O -0.628 6.628 12 C 0.109 3.891 13 N -0.431 5.431 14 C 0.207 3.793 15 N -0.561 5.561 16 C 0.255 3.745 17 N -0.853 5.853 18 C -0.140 4.140 19 H 0.280 0.720 20 H 0.402 0.598 21 H 0.149 0.851 22 H 0.137 0.863 23 H 0.228 0.772 24 H 0.413 0.587 25 H 0.402 0.598 26 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.624 -9.507 1.637 9.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.206 4.206 3 Si 0.813 3.187 4 H -0.202 1.202 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.465 4.465 8 H 0.093 0.907 9 N -0.196 5.196 10 C 0.205 3.795 11 O -0.516 6.516 12 C -0.018 4.018 13 N -0.114 5.114 14 C -0.075 4.075 15 N -0.288 5.288 16 C 0.029 3.971 17 N -0.405 5.405 18 C -0.275 4.275 19 H 0.090 0.910 20 H 0.237 0.763 21 H 0.166 0.834 22 H 0.155 0.845 23 H 0.244 0.756 24 H 0.243 0.757 25 H 0.231 0.769 26 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -0.696 -9.674 1.104 9.761 hybrid contribution -0.217 1.304 0.739 1.515 sum -0.914 -8.370 1.843 8.619 Atomic orbital electron populations 1.69648 1.06635 1.29489 1.49487 1.25973 0.96520 1.02211 0.95930 0.84921 0.77950 0.77305 0.78482 1.20169 1.19414 1.19498 1.19642 0.92609 0.83947 1.50345 0.90659 1.41827 1.09544 1.04313 1.63935 1.21052 0.88388 0.86449 0.83615 1.90585 1.16083 1.87783 1.57102 1.21650 0.89937 0.81335 1.08829 1.44705 1.34874 1.25250 1.06582 1.25161 0.95193 0.92352 0.94844 1.69879 1.23479 1.24606 1.10843 1.17858 0.96201 0.94383 0.88610 1.41174 1.52757 1.39440 1.07085 1.21899 1.09468 1.02865 0.93243 0.91049 0.76345 0.83373 0.84509 0.75588 0.75657 0.76939 0.80530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.62 13.05 21.66 0.28 -46.34 15 2 C -0.01 -0.28 5.50 84.93 0.47 0.19 15 3 Si 0.99 41.55 29.55 68.60 2.03 43.58 15 4 H -0.28 -11.96 7.11 99.48 0.71 -11.25 15 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 15 6 H -0.27 -10.84 7.11 99.48 0.71 -10.13 15 7 C -0.34 -18.31 9.68 84.04 0.81 -17.50 15 8 H 0.08 4.48 7.16 -2.91 -0.02 4.46 15 9 N -0.56 -26.57 5.29 -306.98 -1.62 -28.19 15 10 C 0.42 18.52 7.85 87.66 0.69 19.21 15 11 O -0.63 -34.47 16.01 -3.08 -0.05 -34.52 15 12 C 0.11 3.24 6.64 85.63 0.57 3.81 15 13 N -0.43 -14.23 2.25 -532.15 -1.20 -15.43 15 14 C 0.21 6.84 12.55 180.27 2.26 9.10 15 15 N -0.56 -20.26 11.26 -197.06 -2.22 -22.48 15 16 C 0.25 8.57 8.31 131.06 1.09 9.66 15 17 N -0.85 -21.43 9.18 -55.79 -0.51 -21.94 15 18 C -0.14 -4.66 11.64 83.11 0.97 -3.69 15 19 H 0.28 13.37 8.31 -92.71 -0.77 12.60 15 20 H 0.40 17.53 7.90 -92.71 -0.73 16.80 15 21 H 0.15 3.27 8.14 -2.38 -0.02 3.25 15 22 H 0.14 3.27 8.14 -2.39 -0.02 3.25 15 23 H 0.23 5.79 8.06 -2.91 -0.02 5.76 15 24 H 0.41 8.03 8.96 -92.71 -0.83 7.20 15 25 H 0.40 9.04 8.96 -92.70 -0.83 8.21 15 26 H 0.18 5.08 8.06 -2.91 -0.02 5.06 15 Total: -1.00 -71.84 243.75 2.42 -69.43 By element: Atomic # 1 Polarization: 36.26 SS G_CDS: -1.15 Total: 35.11 kcal Atomic # 6 Polarization: 13.93 SS G_CDS: 6.86 Total: 20.79 kcal Atomic # 7 Polarization: -129.12 SS G_CDS: -5.27 Total: -134.38 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -0.05 Total: -34.52 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -71.84 2.42 -69.43 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725248765.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.032 kcal (2) G-P(sol) polarization free energy of solvation -71.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds