Wall clock time and date at job start Mon Mar 30 2020 02:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 109.47694 * 2 1 4 4 C 1.50704 * 109.47093 * 120.00639 * 2 1 3 5 5 H 1.07994 * 120.00125 * 119.99789 * 4 2 1 6 6 C 1.37878 * 119.99623 * 299.99462 * 4 2 1 7 7 N 1.31512 * 120.00402 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00000 * 179.97438 * 6 4 2 9 9 H 1.48510 * 109.46945 * 60.00230 * 8 6 4 10 10 H 1.48494 * 109.47537 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47245 * 300.00379 * 8 6 4 12 12 C 1.50700 * 109.46679 * 240.00064 * 2 1 3 13 13 O 1.21290 * 120.00074 * 239.99920 * 12 2 1 14 14 N 1.34773 * 120.00110 * 60.00692 * 12 2 1 15 15 N 1.40104 * 119.99916 * 180.02562 * 14 12 2 16 16 C 1.35308 * 125.87080 * 359.97438 * 15 14 12 17 17 C 1.35347 * 106.17713 * 180.02562 * 16 15 14 18 18 N 1.33774 * 106.49812 * 0.02562 * 17 16 15 19 19 N 1.28637 * 108.88333 * 0.02562 * 18 17 16 20 20 H 1.09000 * 109.46858 * 59.99195 * 1 2 3 21 21 H 1.08991 * 109.47694 * 179.97438 * 1 2 3 22 22 H 1.09008 * 109.46528 * 300.00096 * 1 2 3 23 23 H 0.96998 * 120.00769 * 179.97438 * 7 6 4 24 24 H 0.96996 * 119.99834 * 359.97438 * 14 12 2 25 25 H 1.07997 * 126.91170 * 0.06499 * 16 15 14 26 26 H 1.08002 * 126.75507 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0324 -0.7106 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9437 0.8301 2.6035 8 14 2.3213 -1.1206 4.0079 9 1 3.8064 -1.1213 4.0081 10 1 1.8270 -0.4202 5.2204 11 1 1.8257 -2.5205 4.0076 12 6 2.0322 -0.7104 -1.2305 13 8 2.7295 -1.6966 -1.1193 14 7 1.7067 -0.2499 -2.4546 15 7 2.1732 -0.9107 -3.5985 16 6 2.9542 -2.0155 -3.6129 17 6 3.1639 -2.3122 -4.9167 18 7 2.5100 -1.3861 -5.6269 19 7 1.9341 -0.5698 -4.8165 20 1 -0.3633 0.5140 -0.8899 21 1 -0.3634 -1.0275 -0.0005 22 1 -0.3633 0.5139 0.8901 23 1 0.7091 1.1613 3.4845 24 1 1.1489 0.5386 -2.5435 25 1 3.3333 -2.5530 -2.7563 26 1 3.7455 -3.1343 -5.3070 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908825326.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:40 Heat of formation + Delta-G solvation = 101.024930 kcal Electronic energy + Delta-G solvation = -13566.747133 eV Core-core repulsion = 11070.753018 eV Total energy + Delta-G solvation = -2495.994115 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.07287 -39.38766 -35.22114 -34.19605 -31.58093 -30.87996 -29.97607 -25.43722 -23.98823 -22.78704 -22.02020 -19.86002 -18.53258 -16.64723 -16.39249 -16.11606 -15.08096 -14.67055 -14.42736 -14.21473 -13.50148 -12.87953 -11.95813 -11.68391 -11.36942 -11.28499 -11.01757 -10.98649 -10.82422 -10.58240 -10.21328 -9.32768 -9.27864 -9.25556 -8.93595 -8.61995 -6.28498 -4.34951 1.31099 1.80568 2.68088 3.01030 3.22873 3.26677 3.31065 4.11989 4.29264 4.97023 5.04943 5.10657 5.41313 5.65556 5.70572 6.26492 6.30171 6.46377 6.54327 7.05292 7.06450 7.26477 7.51628 7.76142 7.92836 8.42931 8.63376 8.73216 9.32135 10.78784 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.067914 B = 0.007632 C = 0.006993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.188062 B = 3667.978112 C = 4003.100431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.054 3.946 3 H 0.068 0.932 4 C -0.514 4.514 5 H 0.078 0.922 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.908 3.092 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.527 3.473 13 O -0.514 6.514 14 N -0.515 5.515 15 N -0.089 5.089 16 C -0.027 4.027 17 C -0.063 4.063 18 N -0.267 5.267 19 N -0.110 5.110 20 H 0.017 0.983 21 H 0.038 0.962 22 H 0.103 0.897 23 H 0.266 0.734 24 H 0.437 0.563 25 H 0.213 0.787 26 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.869 -1.930 -6.359 6.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.031 3.969 3 H 0.085 0.915 4 C -0.552 4.552 5 H 0.096 0.904 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.735 3.265 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.200 1.200 12 C 0.317 3.683 13 O -0.384 6.384 14 N -0.271 5.271 15 N 0.037 4.963 16 C -0.180 4.180 17 C -0.222 4.222 18 N -0.133 5.133 19 N -0.092 5.092 20 H 0.036 0.964 21 H 0.057 0.943 22 H 0.121 0.879 23 H 0.076 0.924 24 H 0.281 0.719 25 H 0.229 0.771 26 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 0.567 -1.499 -7.006 7.187 hybrid contribution 0.497 -0.715 1.462 1.702 sum 1.064 -2.214 -5.544 6.063 Atomic orbital electron populations 1.21884 0.95473 1.00656 1.01881 1.19038 0.94767 0.97183 0.85935 0.91481 1.21005 1.32435 1.13459 0.88310 0.90410 1.24935 0.94708 0.94946 0.99240 1.69830 1.36136 1.22615 1.24349 0.86383 0.79354 0.79669 0.81082 1.19979 1.21156 1.19984 1.23388 0.78417 0.84976 0.81502 1.90499 1.37086 1.26235 1.84550 1.46895 1.55280 1.31265 0.93692 1.46354 1.31183 1.17659 1.01143 1.24452 0.99973 0.91542 1.02042 1.23564 1.05953 1.02690 0.90022 1.75090 1.10752 1.03602 1.23872 1.78420 1.23049 1.22916 0.84767 0.96405 0.94306 0.87894 0.92389 0.71944 0.77072 0.78877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.87 37.16 0.33 -2.52 15 2 C 0.05 1.18 2.64 -92.92 -0.25 0.93 15 3 H 0.07 1.48 8.14 -51.93 -0.42 1.06 15 4 C -0.51 -13.06 8.37 -34.44 -0.29 -13.34 15 5 H 0.08 2.07 6.75 -52.49 -0.35 1.71 15 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 15 7 N -0.89 -22.89 11.32 55.43 0.63 -22.26 15 8 Si 0.91 20.17 29.54 -169.99 -5.02 15.14 15 9 H -0.27 -6.11 7.11 56.52 0.40 -5.70 15 10 H -0.29 -6.26 7.11 56.52 0.40 -5.86 15 11 H -0.27 -6.10 7.11 56.52 0.40 -5.70 15 12 C 0.53 10.62 7.22 -10.99 -0.08 10.55 15 13 O -0.51 -11.44 12.59 5.55 0.07 -11.37 15 14 N -0.52 -8.84 6.52 31.22 0.20 -8.63 15 15 N -0.09 -1.58 4.54 30.52 0.14 -1.44 15 16 C -0.03 -0.45 10.50 -17.05 -0.18 -0.63 15 17 C -0.06 -0.93 12.05 -17.74 -0.21 -1.14 15 18 N -0.27 -4.62 12.41 30.24 0.38 -4.25 15 19 N -0.11 -2.00 13.34 60.35 0.81 -1.19 15 20 H 0.02 0.28 7.56 -51.93 -0.39 -0.11 15 21 H 0.04 0.79 8.14 -51.93 -0.42 0.37 15 22 H 0.10 2.32 6.07 -51.92 -0.32 2.00 15 23 H 0.27 6.58 8.31 -40.82 -0.34 6.24 15 24 H 0.44 6.25 8.25 -182.60 -1.51 4.74 15 25 H 0.21 3.53 5.86 -52.49 -0.31 3.22 15 26 H 0.19 2.00 8.06 -52.49 -0.42 1.58 15 LS Contribution 233.67 15.07 3.52 3.52 Total: -1.00 -28.24 233.67 -3.33 -31.57 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -3.28 Total: 3.55 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -0.77 Total: -4.63 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 2.15 Total: -37.78 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.07 Total: -11.37 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -28.24 -3.33 -31.57 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908825326.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.591 kcal (2) G-P(sol) polarization free energy of solvation -28.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds