Wall clock time and date at job start Mon Mar 30 2020 02:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 109.47694 * 2 1 4 4 C 1.50704 * 109.47093 * 120.00639 * 2 1 3 5 5 H 1.07994 * 120.00125 * 119.99789 * 4 2 1 6 6 C 1.37878 * 119.99623 * 299.99462 * 4 2 1 7 7 N 1.31512 * 120.00402 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00000 * 179.97438 * 6 4 2 9 9 H 1.48510 * 109.46945 * 60.00230 * 8 6 4 10 10 H 1.48494 * 109.47537 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47245 * 300.00379 * 8 6 4 12 12 C 1.50700 * 109.46679 * 240.00064 * 2 1 3 13 13 O 1.21290 * 120.00074 * 239.99920 * 12 2 1 14 14 N 1.34773 * 120.00110 * 60.00692 * 12 2 1 15 15 N 1.40104 * 119.99916 * 180.02562 * 14 12 2 16 16 C 1.35308 * 125.87080 * 359.97438 * 15 14 12 17 17 C 1.35347 * 106.17713 * 180.02562 * 16 15 14 18 18 N 1.33774 * 106.49812 * 0.02562 * 17 16 15 19 19 N 1.28637 * 108.88333 * 0.02562 * 18 17 16 20 20 H 1.09000 * 109.46858 * 59.99195 * 1 2 3 21 21 H 1.08991 * 109.47694 * 179.97438 * 1 2 3 22 22 H 1.09008 * 109.46528 * 300.00096 * 1 2 3 23 23 H 0.96998 * 120.00769 * 179.97438 * 7 6 4 24 24 H 0.96996 * 119.99834 * 359.97438 * 14 12 2 25 25 H 1.07997 * 126.91170 * 0.06499 * 16 15 14 26 26 H 1.08002 * 126.75507 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0324 -0.7106 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9437 0.8301 2.6035 8 14 2.3213 -1.1206 4.0079 9 1 3.8064 -1.1213 4.0081 10 1 1.8270 -0.4202 5.2204 11 1 1.8257 -2.5205 4.0076 12 6 2.0322 -0.7104 -1.2305 13 8 2.7295 -1.6966 -1.1193 14 7 1.7067 -0.2499 -2.4546 15 7 2.1732 -0.9107 -3.5985 16 6 2.9542 -2.0155 -3.6129 17 6 3.1639 -2.3122 -4.9167 18 7 2.5100 -1.3861 -5.6269 19 7 1.9341 -0.5698 -4.8165 20 1 -0.3633 0.5140 -0.8899 21 1 -0.3634 -1.0275 -0.0005 22 1 -0.3633 0.5139 0.8901 23 1 0.7091 1.1613 3.4845 24 1 1.1489 0.5386 -2.5435 25 1 3.3333 -2.5530 -2.7563 26 1 3.7455 -3.1343 -5.3070 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908825326.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:39 Heat of formation + Delta-G solvation = 81.207905 kcal Electronic energy + Delta-G solvation = -13567.606464 eV Core-core repulsion = 11070.753018 eV Total energy + Delta-G solvation = -2496.853446 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.40148 -40.97520 -36.69761 -35.99420 -33.24603 -32.17893 -31.55485 -27.27824 -25.55332 -24.11026 -23.52073 -21.43111 -19.91639 -18.40477 -17.87038 -17.76426 -16.77337 -16.11750 -15.97368 -15.57368 -15.06477 -14.60898 -13.66764 -13.06932 -12.99515 -12.85831 -12.72601 -12.68220 -12.30512 -12.23958 -12.01924 -11.15769 -10.94191 -10.56835 -10.51253 -10.33372 -8.20399 -6.32031 -0.08378 0.43334 1.40394 1.45514 1.46653 1.47299 1.54486 2.41039 2.79510 3.11559 3.64321 3.79946 4.11829 4.24511 4.45627 4.66125 4.79693 4.90960 5.12227 5.37291 5.61143 5.70313 5.72888 6.00374 6.16823 6.74696 6.88378 7.30678 7.37397 8.85144 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.067914 B = 0.007632 C = 0.006993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.188062 B = 3667.978112 C = 4003.100431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.051 3.949 3 H 0.065 0.935 4 C -0.534 4.534 5 H 0.059 0.941 6 C 0.027 3.973 7 N -0.907 5.907 8 Si 0.957 3.043 9 H -0.275 1.275 10 H -0.279 1.279 11 H -0.275 1.275 12 C 0.535 3.465 13 O -0.539 6.539 14 N -0.501 5.501 15 N -0.097 5.097 16 C -0.043 4.043 17 C -0.040 4.040 18 N -0.281 5.281 19 N -0.124 5.124 20 H 0.056 0.944 21 H 0.030 0.970 22 H 0.080 0.920 23 H 0.268 0.732 24 H 0.450 0.550 25 H 0.211 0.789 26 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.016 -2.302 -7.078 7.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.028 3.972 3 H 0.082 0.918 4 C -0.573 4.573 5 H 0.078 0.922 6 C -0.174 4.174 7 N -0.545 5.545 8 Si 0.783 3.217 9 H -0.201 1.201 10 H -0.204 1.204 11 H -0.201 1.201 12 C 0.325 3.675 13 O -0.411 6.411 14 N -0.258 5.258 15 N 0.027 4.973 16 C -0.196 4.196 17 C -0.200 4.200 18 N -0.147 5.147 19 N -0.105 5.105 20 H 0.075 0.925 21 H 0.050 0.950 22 H 0.099 0.901 23 H 0.077 0.923 24 H 0.296 0.704 25 H 0.227 0.773 26 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 0.692 -1.840 -7.754 7.999 hybrid contribution 0.481 -0.622 1.599 1.782 sum 1.173 -2.461 -6.154 6.731 Atomic orbital electron populations 1.21727 0.94161 1.00366 1.02672 1.18904 0.95768 0.96643 0.85883 0.91771 1.21186 1.32599 1.13333 0.90161 0.92239 1.25520 0.94931 0.95587 1.01314 1.69907 1.36544 1.23217 1.24810 0.85615 0.78706 0.78706 0.78672 1.20066 1.20406 1.20059 1.22828 0.78148 0.84475 0.82044 1.90493 1.38144 1.27214 1.85214 1.46371 1.54791 1.31271 0.93341 1.46426 1.31744 1.18134 1.00961 1.24657 1.00349 0.91583 1.02970 1.24254 1.04392 1.02448 0.88868 1.75094 1.11333 1.04268 1.24054 1.78432 1.23769 1.23529 0.84747 0.92548 0.95045 0.90103 0.92301 0.70354 0.77296 0.74533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.18 8.87 71.98 0.64 -4.55 15 2 C 0.05 2.22 2.64 -12.28 -0.03 2.19 15 3 H 0.06 2.82 8.14 -2.39 -0.02 2.80 15 4 C -0.53 -27.30 8.37 25.60 0.21 -27.08 15 5 H 0.06 3.21 6.75 -2.91 -0.02 3.19 15 6 C 0.03 1.37 5.30 84.66 0.45 1.82 15 7 N -0.91 -46.37 11.32 21.45 0.24 -46.12 15 8 Si 0.96 41.15 29.54 68.60 2.03 43.17 15 9 H -0.28 -11.78 7.11 99.48 0.71 -11.08 15 10 H -0.28 -11.58 7.11 99.48 0.71 -10.87 15 11 H -0.28 -11.78 7.11 99.48 0.71 -11.07 15 12 C 0.54 21.23 7.22 87.66 0.63 21.86 15 13 O -0.54 -23.86 12.59 -3.06 -0.04 -23.90 15 14 N -0.50 -16.52 6.52 -173.53 -1.13 -17.65 15 15 N -0.10 -3.31 4.54 -57.36 -0.26 -3.57 15 16 C -0.04 -1.36 10.50 83.49 0.88 -0.49 15 17 C -0.04 -1.08 12.05 83.73 1.01 -0.07 15 18 N -0.28 -9.12 12.41 -58.26 -0.72 -9.84 15 19 N -0.12 -4.28 13.34 37.02 0.49 -3.79 15 20 H 0.06 1.74 7.56 -2.39 -0.02 1.72 15 21 H 0.03 1.25 8.14 -2.39 -0.02 1.23 15 22 H 0.08 3.60 6.07 -2.38 -0.01 3.59 15 23 H 0.27 13.12 8.31 -92.71 -0.77 12.35 15 24 H 0.45 12.08 8.25 -213.32 -1.76 10.32 15 25 H 0.21 6.75 5.86 -2.91 -0.02 6.74 15 26 H 0.24 3.91 8.06 -2.91 -0.02 3.88 15 Total: -1.00 -59.08 233.67 3.86 -55.22 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -0.54 Total: 12.80 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: 3.79 Total: -6.33 kcal Atomic # 7 Polarization: -79.59 SS G_CDS: -1.38 Total: -80.97 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.04 Total: -23.90 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.17 kcal Total: -59.08 3.86 -55.22 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908825326.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.432 kcal (2) G-P(sol) polarization free energy of solvation -59.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds