Wall clock time and date at job start Mon Mar 30 2020 02:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34169 * 125.66147 * 2 1 4 4 C 1.38198 * 107.53027 * 179.97438 * 3 2 1 5 5 C 1.47121 * 126.46226 * 179.97438 * 4 3 2 6 6 O 1.21657 * 120.00458 * 179.97438 * 5 4 3 7 7 N 1.34778 * 120.00165 * 359.97438 * 5 4 3 8 8 C 1.36990 * 120.00333 * 179.97438 * 7 5 4 9 9 H 1.07997 * 120.00173 * 0.02562 * 8 7 5 10 10 C 1.38965 * 120.00000 * 179.97438 * 8 7 5 11 11 N 1.31419 * 120.00144 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99888 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47047 * 90.00282 * 12 10 8 14 14 H 1.48501 * 109.47179 * 210.00277 * 12 10 8 15 15 H 1.48494 * 109.47409 * 330.00575 * 12 10 8 16 16 C 1.41887 * 107.07545 * 359.97438 * 4 3 2 17 17 N 1.39513 * 126.08275 * 179.97438 * 16 4 3 18 18 N 1.30947 * 107.83898 * 359.71992 * 16 4 3 19 19 H 1.09001 * 109.47060 * 90.00579 * 1 2 3 20 20 H 1.09004 * 109.47073 * 210.00068 * 1 2 3 21 21 H 1.09000 * 109.47212 * 330.00151 * 1 2 3 22 22 H 1.07997 * 126.23558 * 359.97438 * 3 2 1 23 23 H 0.97008 * 119.99991 * 0.02562 * 7 5 4 24 24 H 0.96997 * 120.00134 * 179.97438 * 11 10 8 25 25 H 0.97010 * 119.99507 * 0.02562 * 17 16 4 26 26 H 0.96994 * 120.00092 * 179.97438 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2473 1.0901 0.0000 4 6 3.5606 0.6600 0.0006 5 6 4.7597 1.5124 0.0003 6 8 5.8660 1.0062 0.0013 7 7 4.6328 2.8542 -0.0012 8 6 5.7493 3.6479 -0.0010 9 1 6.7314 3.1985 0.0000 10 6 5.6184 5.0314 -0.0030 11 7 4.4234 5.5783 -0.0047 12 14 7.1409 6.1137 -0.0020 13 1 7.5466 6.3986 -1.4018 14 1 6.8407 7.3896 0.6959 15 1 8.2457 5.4132 0.7006 16 6 3.5345 -0.7586 0.0016 17 7 4.6466 -1.6009 0.0019 18 7 2.2808 -1.1367 0.0076 19 1 -0.3633 -0.0001 -1.0277 20 1 -0.3633 -0.8900 0.5139 21 1 -0.3634 0.8900 0.5138 22 1 1.9117 2.1166 -0.0004 23 1 3.7507 3.2579 -0.0017 24 1 4.3320 6.5440 -0.0057 25 1 5.5405 -1.2239 0.0018 26 1 4.5261 -2.5633 0.0029 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000953058968.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:44 Heat of formation + Delta-G solvation = 38.834476 kcal Electronic energy + Delta-G solvation = -13386.061773 eV Core-core repulsion = 10887.370877 eV Total energy + Delta-G solvation = -2498.690896 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.64032 -37.64687 -34.64187 -33.71584 -31.53732 -30.92550 -29.48353 -26.16763 -24.68797 -21.75472 -20.25389 -19.13614 -17.99167 -16.52806 -15.75916 -15.48942 -15.20254 -14.77181 -14.31613 -13.86032 -13.35533 -12.94710 -12.50258 -12.45667 -12.08282 -11.54182 -11.07595 -10.42512 -10.39126 -10.26178 -10.14960 -9.51209 -8.42631 -8.25748 -7.94139 -7.36234 -6.41078 -3.77196 2.14994 2.78278 3.10505 3.27702 3.29282 3.34553 4.19415 4.35170 4.52812 4.89860 5.20875 5.26121 5.27367 5.42664 5.47984 5.80311 6.08826 6.45882 6.74982 7.36476 7.56827 7.80904 8.01991 8.10027 8.66256 8.67485 9.20653 9.59902 10.13287 10.77249 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.045572 B = 0.008333 C = 0.007072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.264572 B = 3359.335873 C = 3958.455155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.372 5.372 3 C 0.099 3.901 4 C -0.290 4.290 5 C 0.520 3.480 6 O -0.606 6.606 7 N -0.557 5.557 8 C -0.293 4.293 9 H 0.105 0.895 10 C 0.021 3.979 11 N -0.902 5.902 12 Si 0.931 3.069 13 H -0.278 1.278 14 H -0.284 1.284 15 H -0.269 1.269 16 C 0.382 3.618 17 N -0.833 5.833 18 N -0.378 5.378 19 H 0.070 0.930 20 H 0.084 0.916 21 H 0.085 0.915 22 H 0.179 0.821 23 H 0.391 0.609 24 H 0.271 0.729 25 H 0.423 0.577 26 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.667 -6.593 0.083 10.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.153 5.153 3 C -0.052 4.052 4 C -0.308 4.308 5 C 0.308 3.692 6 O -0.493 6.493 7 N -0.191 5.191 8 C -0.423 4.423 9 H 0.123 0.877 10 C -0.181 4.181 11 N -0.543 5.543 12 Si 0.758 3.242 13 H -0.204 1.204 14 H -0.210 1.210 15 H -0.194 1.194 16 C 0.120 3.880 17 N -0.387 5.387 18 N -0.212 5.212 19 H 0.088 0.912 20 H 0.103 0.897 21 H 0.104 0.896 22 H 0.196 0.804 23 H 0.224 0.776 24 H 0.081 0.919 25 H 0.258 0.742 26 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -7.951 -7.584 0.095 10.988 hybrid contribution 0.809 1.419 -0.028 1.634 sum -7.142 -6.165 0.067 9.435 Atomic orbital electron populations 1.21752 0.74529 1.04080 1.02938 1.47511 1.05928 1.03250 1.58578 1.22994 0.90256 0.93454 0.98521 1.20342 0.93607 0.92630 1.24200 1.16799 0.86854 0.82090 0.83442 1.90497 1.26692 1.73875 1.58239 1.41699 1.09496 1.03945 1.63948 1.19747 0.88236 0.87510 1.46787 0.87746 1.25262 0.98110 0.97254 0.97465 1.69604 1.22012 1.12111 1.50616 0.85840 0.81094 0.78894 0.78370 1.20433 1.20969 1.19388 1.19070 0.87597 0.88796 0.92514 1.41529 1.05296 1.06607 1.85250 1.77114 0.99553 1.06516 1.38056 0.91193 0.89711 0.89635 0.80381 0.77595 0.91878 0.74218 0.77895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.10 11.43 59.85 0.68 1.78 15 2 N -0.37 -5.93 3.97 -67.57 -0.27 -6.20 15 3 C 0.10 1.72 10.98 -16.54 -0.18 1.54 15 4 C -0.29 -6.18 6.14 -104.91 -0.64 -6.82 15 5 C 0.52 13.13 7.76 -12.66 -0.10 13.03 15 6 O -0.61 -16.67 14.77 5.23 0.08 -16.59 15 7 N -0.56 -14.44 5.27 -12.04 -0.06 -14.51 15 8 C -0.29 -8.21 9.68 -14.98 -0.14 -8.35 15 9 H 0.10 3.05 7.15 -52.49 -0.38 2.67 15 10 C 0.02 0.55 5.50 -17.46 -0.10 0.45 15 11 N -0.90 -24.31 13.05 55.50 0.72 -23.59 15 12 Si 0.93 20.98 29.55 -169.99 -5.02 15.95 15 13 H -0.28 -6.21 7.11 56.52 0.40 -5.80 15 14 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 15 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 16 C 0.38 7.62 8.42 -154.68 -1.30 6.32 15 17 N -0.83 -14.49 9.11 31.55 0.29 -14.20 15 18 N -0.38 -7.00 12.52 31.57 0.40 -6.61 15 19 H 0.07 0.60 8.14 -51.93 -0.42 0.18 15 20 H 0.08 0.77 8.14 -51.93 -0.42 0.35 15 21 H 0.09 0.65 8.14 -51.93 -0.42 0.23 15 22 H 0.18 2.61 7.46 -52.49 -0.39 2.22 15 23 H 0.39 9.55 6.81 -40.82 -0.28 9.27 15 24 H 0.27 6.91 8.31 -40.82 -0.34 6.57 15 25 H 0.42 7.84 7.08 -40.82 -0.29 7.55 15 26 H 0.39 5.51 8.96 -40.82 -0.37 5.14 15 LS Contribution 239.67 15.07 3.61 3.61 Total: -1.00 -33.19 239.67 -4.15 -37.34 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -2.10 Total: 16.86 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: -1.78 Total: 7.94 kcal Atomic # 7 Polarization: -66.18 SS G_CDS: 1.07 Total: -65.10 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: 0.08 Total: -16.59 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -33.19 -4.15 -37.34 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953058968.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.171 kcal (2) G-P(sol) polarization free energy of solvation -33.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds