Wall clock time and date at job start Mon Mar 30 2020 02:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34169 * 125.66147 * 2 1 4 4 C 1.38198 * 107.53027 * 179.97438 * 3 2 1 5 5 C 1.47121 * 126.46226 * 179.97438 * 4 3 2 6 6 O 1.21657 * 120.00458 * 179.97438 * 5 4 3 7 7 N 1.34778 * 120.00165 * 359.97438 * 5 4 3 8 8 C 1.36990 * 120.00333 * 179.97438 * 7 5 4 9 9 H 1.07997 * 120.00173 * 0.02562 * 8 7 5 10 10 C 1.38965 * 120.00000 * 179.97438 * 8 7 5 11 11 N 1.31419 * 120.00144 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99888 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47047 * 90.00282 * 12 10 8 14 14 H 1.48501 * 109.47179 * 210.00277 * 12 10 8 15 15 H 1.48494 * 109.47409 * 330.00575 * 12 10 8 16 16 C 1.41887 * 107.07545 * 359.97438 * 4 3 2 17 17 N 1.39513 * 126.08275 * 179.97438 * 16 4 3 18 18 N 1.30947 * 107.83898 * 359.71992 * 16 4 3 19 19 H 1.09001 * 109.47060 * 90.00579 * 1 2 3 20 20 H 1.09004 * 109.47073 * 210.00068 * 1 2 3 21 21 H 1.09000 * 109.47212 * 330.00151 * 1 2 3 22 22 H 1.07997 * 126.23558 * 359.97438 * 3 2 1 23 23 H 0.97008 * 119.99991 * 0.02562 * 7 5 4 24 24 H 0.96997 * 120.00134 * 179.97438 * 11 10 8 25 25 H 0.97010 * 119.99507 * 0.02562 * 17 16 4 26 26 H 0.96994 * 120.00092 * 179.97438 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2473 1.0901 0.0000 4 6 3.5606 0.6600 0.0006 5 6 4.7597 1.5124 0.0003 6 8 5.8660 1.0062 0.0013 7 7 4.6328 2.8542 -0.0012 8 6 5.7493 3.6479 -0.0010 9 1 6.7314 3.1985 0.0000 10 6 5.6184 5.0314 -0.0030 11 7 4.4234 5.5783 -0.0047 12 14 7.1409 6.1137 -0.0020 13 1 7.5466 6.3986 -1.4018 14 1 6.8407 7.3896 0.6959 15 1 8.2457 5.4132 0.7006 16 6 3.5345 -0.7586 0.0016 17 7 4.6466 -1.6009 0.0019 18 7 2.2808 -1.1367 0.0076 19 1 -0.3633 -0.0001 -1.0277 20 1 -0.3633 -0.8900 0.5139 21 1 -0.3634 0.8900 0.5138 22 1 1.9117 2.1166 -0.0004 23 1 3.7507 3.2579 -0.0017 24 1 4.3320 6.5440 -0.0057 25 1 5.5405 -1.2239 0.0018 26 1 4.5261 -2.5633 0.0029 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000953058968.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:43 Heat of formation + Delta-G solvation = 13.135539 kcal Electronic energy + Delta-G solvation = -13387.176162 eV Core-core repulsion = 10887.370877 eV Total energy + Delta-G solvation = -2499.805285 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.07491 -39.56910 -36.20550 -35.53703 -33.36009 -32.33362 -31.01345 -27.58230 -26.45691 -23.32508 -21.69945 -20.84036 -19.92778 -18.14608 -17.30542 -17.01438 -16.47835 -16.45565 -15.90157 -15.67781 -15.08442 -14.60544 -13.73930 -13.68884 -13.48631 -13.34135 -12.89847 -12.36089 -12.09544 -11.69360 -11.67061 -11.48958 -10.40163 -9.99136 -9.71485 -8.77673 -8.43285 -5.87711 0.71217 1.41096 1.45336 1.57299 1.59321 1.63659 2.34310 2.65641 2.96328 3.40023 3.46521 3.76501 4.05863 4.54092 4.57174 4.63315 4.77101 4.79512 5.23262 5.46806 6.03670 6.13154 6.38121 6.62381 6.67464 7.16370 7.28483 7.62604 8.17577 8.74902 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.045572 B = 0.008333 C = 0.007072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.264572 B = 3359.335873 C = 3958.455155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.357 5.357 3 C 0.126 3.874 4 C -0.341 4.341 5 C 0.519 3.481 6 O -0.639 6.639 7 N -0.564 5.564 8 C -0.330 4.330 9 H 0.081 0.919 10 C -0.012 4.012 11 N -0.919 5.919 12 Si 0.993 3.007 13 H -0.272 1.272 14 H -0.270 1.270 15 H -0.273 1.273 16 C 0.369 3.631 17 N -0.828 5.828 18 N -0.387 5.387 19 H 0.091 0.909 20 H 0.097 0.903 21 H 0.117 0.883 22 H 0.208 0.792 23 H 0.396 0.604 24 H 0.278 0.722 25 H 0.417 0.583 26 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.326 -6.148 0.076 11.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.135 5.135 3 C -0.029 4.029 4 C -0.359 4.359 5 C 0.309 3.691 6 O -0.529 6.529 7 N -0.199 5.199 8 C -0.460 4.460 9 H 0.099 0.901 10 C -0.212 4.212 11 N -0.560 5.560 12 Si 0.817 3.183 13 H -0.197 1.197 14 H -0.195 1.195 15 H -0.198 1.198 16 C 0.107 3.893 17 N -0.382 5.382 18 N -0.222 5.222 19 H 0.109 0.891 20 H 0.116 0.884 21 H 0.136 0.864 22 H 0.224 0.776 23 H 0.230 0.770 24 H 0.087 0.913 25 H 0.250 0.750 26 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -9.674 -7.185 0.086 12.051 hybrid contribution 1.153 1.194 -0.030 1.660 sum -8.522 -5.991 0.056 10.417 Atomic orbital electron populations 1.22323 0.70795 1.06382 1.05067 1.48069 1.07828 1.02131 1.55508 1.23294 0.89163 0.94899 0.95527 1.20124 0.93754 0.92926 1.29089 1.17399 0.87795 0.82130 0.81754 1.90451 1.28543 1.74485 1.59405 1.41652 1.09191 1.04161 1.64930 1.19707 0.88131 0.88620 1.49536 0.90128 1.26010 1.01112 0.97697 0.96355 1.69653 1.23295 1.12749 1.50281 0.84919 0.77494 0.77281 0.78588 1.19720 1.19523 1.19810 1.19305 0.88477 0.88682 0.92834 1.41494 1.04584 1.07325 1.84793 1.77100 0.99054 1.07656 1.38386 0.89070 0.88441 0.86442 0.77553 0.76984 0.91254 0.74996 0.76185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.48 11.43 127.77 1.46 2.95 15 2 N -0.36 -10.32 3.97 -367.70 -1.46 -11.78 15 3 C 0.13 4.12 10.98 84.33 0.93 5.04 15 4 C -0.34 -14.44 6.14 -20.05 -0.12 -14.57 15 5 C 0.52 26.83 7.76 86.57 0.67 27.50 15 6 O -0.64 -36.51 14.77 -4.21 -0.06 -36.58 15 7 N -0.56 -29.81 5.27 -310.22 -1.64 -31.45 15 8 C -0.33 -18.94 9.68 84.06 0.81 -18.12 15 9 H 0.08 4.90 7.15 -2.91 -0.02 4.88 15 10 C -0.01 -0.64 5.50 84.93 0.47 -0.17 15 11 N -0.92 -48.87 13.05 21.67 0.28 -48.59 15 12 Si 0.99 42.77 29.55 68.60 2.03 44.80 15 13 H -0.27 -11.37 7.11 99.48 0.71 -10.66 15 14 H -0.27 -10.98 7.11 99.48 0.71 -10.28 15 15 H -0.27 -11.85 7.11 99.48 0.71 -11.14 15 16 C 0.37 14.53 8.42 134.00 1.13 15.66 15 17 N -0.83 -28.96 9.11 -54.10 -0.49 -29.46 15 18 N -0.39 -13.64 12.52 -54.02 -0.68 -14.31 15 19 H 0.09 1.17 8.14 -2.39 -0.02 1.15 15 20 H 0.10 1.38 8.14 -2.38 -0.02 1.36 15 21 H 0.12 1.20 8.14 -2.39 -0.02 1.18 15 22 H 0.21 5.45 7.46 -2.91 -0.02 5.43 15 23 H 0.40 19.41 6.81 -92.70 -0.63 18.78 15 24 H 0.28 13.79 8.31 -92.71 -0.77 13.02 15 25 H 0.42 15.88 7.08 -92.70 -0.66 15.23 15 26 H 0.41 11.31 8.96 -92.71 -0.83 10.48 15 Total: -1.00 -72.13 239.67 2.46 -69.67 By element: Atomic # 1 Polarization: 40.29 SS G_CDS: -0.87 Total: 39.42 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: 5.34 Total: 18.28 kcal Atomic # 7 Polarization: -131.61 SS G_CDS: -3.98 Total: -135.59 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -0.06 Total: -36.58 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -72.13 2.46 -69.67 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953058968.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.807 kcal (2) G-P(sol) polarization free energy of solvation -72.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds