Wall clock time and date at job start Mon Mar 30 2020 02:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47070 * 2 1 4 4 C 1.50701 * 109.46845 * 119.99845 * 2 1 3 5 5 H 1.08002 * 119.99347 * 114.47715 * 4 2 1 6 6 C 1.37871 * 120.00267 * 294.47119 * 4 2 1 7 7 N 1.31515 * 120.00275 * 164.60227 * 6 4 2 8 8 Si 1.86805 * 120.00132 * 344.88100 * 6 4 2 9 9 H 1.48496 * 109.46866 * 269.72707 * 8 6 4 10 10 H 1.48499 * 109.46925 * 29.72167 * 8 6 4 11 11 H 1.48493 * 109.47426 * 149.72060 * 8 6 4 12 12 C 1.50700 * 109.46714 * 239.99629 * 2 1 3 13 13 O 1.21274 * 120.00252 * 239.99875 * 12 2 1 14 14 N 1.34783 * 120.00008 * 60.00605 * 12 2 1 15 15 N 1.40094 * 119.99879 * 180.02562 * 14 12 2 16 16 C 1.35487 * 126.98330 * 359.67617 * 15 14 12 17 17 N 1.30520 * 107.30986 * 179.90207 * 16 15 14 18 18 N 1.28598 * 109.67062 * 0.37617 * 17 16 15 19 19 C 1.30514 * 109.67241 * 359.76502 * 18 17 16 20 20 H 1.09008 * 109.46994 * 53.51729 * 1 2 3 21 21 H 1.08992 * 109.47327 * 173.52312 * 1 2 3 22 22 H 1.09002 * 109.46728 * 293.52868 * 1 2 3 23 23 H 0.97006 * 119.99247 * 355.18806 * 7 6 4 24 24 H 0.96999 * 119.99536 * 359.97438 * 14 12 2 25 25 H 1.08003 * 126.34410 * 0.04695 * 16 15 14 26 26 H 1.07997 * 126.34702 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5777 -1.6376 1.1338 6 6 1.7958 -0.1767 2.4795 7 7 1.9548 -0.9196 3.5530 8 14 1.2419 1.5995 2.6467 9 1 2.4315 2.4789 2.7757 10 1 0.4651 1.9911 1.4431 11 1 0.3887 1.7405 3.8538 12 6 2.0323 -0.7105 -1.2304 13 8 2.7295 -1.6965 -1.1192 14 7 1.7067 -0.2500 -2.4546 15 7 2.1732 -0.9109 -3.5985 16 6 2.9595 -2.0135 -3.6391 17 7 3.1579 -2.3029 -4.8962 18 7 2.5515 -1.4457 -5.6387 19 6 1.9346 -0.5735 -4.8889 20 1 -0.3633 0.6111 -0.8263 21 1 -0.3633 -1.0210 -0.1159 22 1 -0.3633 0.4103 0.9423 23 1 2.1704 -1.8611 3.4636 24 1 1.1488 0.5385 -2.5436 25 1 3.3479 -2.5543 -2.7887 26 1 1.3437 0.2623 -5.2332 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328273280.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:43 Heat of formation + Delta-G solvation = 58.401550 kcal Electronic energy + Delta-G solvation = -13606.020116 eV Core-core repulsion = 11108.177712 eV Total energy + Delta-G solvation = -2497.842404 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.31802 -41.00689 -36.94540 -36.02150 -33.66809 -31.87908 -31.73839 -26.85522 -25.55475 -23.88777 -23.60438 -21.16835 -20.04678 -19.48520 -17.93139 -17.54346 -16.85231 -16.20912 -15.81260 -15.57344 -15.21329 -14.66867 -14.02325 -13.52812 -13.25771 -12.94546 -12.91700 -12.40332 -12.13400 -11.69627 -11.36264 -11.00820 -10.96260 -10.63513 -10.52371 -10.32006 -8.78670 -6.41664 0.12748 0.65071 1.43223 1.55073 1.62892 1.66495 1.76660 2.58167 2.63093 3.08554 3.48830 3.68962 4.06847 4.19602 4.35210 4.39974 4.59017 4.78465 4.93465 5.08823 5.48110 5.67248 5.81894 6.04670 6.18011 6.56465 6.98350 7.40701 7.47347 8.61858 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.066489 B = 0.008032 C = 0.007450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.018064 B = 3485.251700 C = 3757.693685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.020 3.980 3 H 0.091 0.909 4 C -0.605 4.605 5 H 0.019 0.981 6 C -0.020 4.020 7 N -0.938 5.938 8 Si 1.082 2.918 9 H -0.277 1.277 10 H -0.204 1.204 11 H -0.293 1.293 12 C 0.532 3.468 13 O -0.555 6.555 14 N -0.506 5.506 15 N -0.279 5.279 16 C 0.159 3.841 17 N -0.324 5.324 18 N -0.323 5.323 19 C 0.164 3.836 20 H 0.091 0.909 21 H 0.036 0.964 22 H 0.063 0.937 23 H 0.250 0.750 24 H 0.456 0.544 25 H 0.221 0.779 26 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.328 9.752 -12.166 16.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.004 4.004 3 H 0.109 0.891 4 C -0.643 4.643 5 H 0.037 0.963 6 C -0.217 4.217 7 N -0.573 5.573 8 Si 0.900 3.100 9 H -0.203 1.203 10 H -0.126 1.126 11 H -0.219 1.219 12 C 0.322 3.678 13 O -0.429 6.429 14 N -0.262 5.262 15 N -0.055 5.055 16 C -0.130 4.130 17 N -0.165 5.165 18 N -0.163 5.163 19 C -0.123 4.123 20 H 0.110 0.890 21 H 0.056 0.944 22 H 0.082 0.918 23 H 0.059 0.941 24 H 0.304 0.696 25 H 0.238 0.762 26 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -5.706 9.494 -12.212 16.487 hybrid contribution 0.237 -1.204 0.573 1.354 sum -5.468 8.290 -11.639 15.300 Atomic orbital electron populations 1.22181 0.93235 1.01434 1.03278 1.19288 0.96177 0.97803 0.87136 0.89103 1.22023 1.39946 1.10023 0.92315 0.96280 1.27521 0.93532 1.09554 0.91126 1.70947 1.46370 1.07711 1.32236 0.83778 0.77894 0.69541 0.78738 1.20312 1.12577 1.21911 1.22303 0.78279 0.84284 0.82933 1.90543 1.38697 1.28017 1.85615 1.45882 1.54822 1.31141 0.94330 1.45780 1.36766 1.21152 1.01839 1.27240 0.96869 0.89805 0.99095 1.74381 1.21101 1.21353 0.99641 1.74232 1.12255 1.03762 1.26090 1.27652 1.03818 1.04019 0.76823 0.89000 0.94437 0.91772 0.94144 0.69556 0.76250 0.70352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.30 8.32 71.98 0.60 -3.70 15 2 C 0.02 0.73 2.19 -12.28 -0.03 0.70 15 3 H 0.09 2.87 6.77 -2.39 -0.02 2.85 15 4 C -0.61 -31.95 8.65 25.60 0.22 -31.73 15 5 H 0.02 1.20 7.02 -2.91 -0.02 1.18 15 6 C -0.02 -1.07 5.33 84.65 0.45 -0.62 15 7 N -0.94 -56.81 13.70 21.45 0.29 -56.51 15 8 Si 1.08 41.73 26.17 68.60 1.80 43.53 15 9 H -0.28 -10.39 7.11 99.48 0.71 -9.69 15 10 H -0.20 -5.67 5.53 99.48 0.55 -5.12 15 11 H -0.29 -11.82 7.11 99.48 0.71 -11.11 15 12 C 0.53 19.28 7.23 87.66 0.63 19.91 15 13 O -0.56 -25.62 12.71 -3.01 -0.04 -25.66 15 14 N -0.51 -12.42 6.40 -173.53 -1.11 -13.53 15 15 N -0.28 -7.66 3.87 -201.92 -0.78 -8.44 15 16 C 0.16 5.49 11.64 180.11 2.10 7.58 15 17 N -0.32 -11.56 12.21 -59.99 -0.73 -12.30 15 18 N -0.32 -9.94 12.21 -59.99 -0.73 -10.68 15 19 C 0.16 3.57 13.00 180.11 2.34 5.91 15 20 H 0.09 1.66 7.75 -2.38 -0.02 1.64 15 21 H 0.04 1.23 8.14 -2.39 -0.02 1.21 15 22 H 0.06 2.01 5.06 -2.39 -0.01 2.00 15 23 H 0.25 15.76 8.73 -92.70 -0.81 14.95 15 24 H 0.46 6.20 8.38 -213.33 -1.79 4.41 15 25 H 0.22 8.30 5.95 -2.91 -0.02 8.28 15 26 H 0.28 2.18 8.06 -2.91 -0.02 2.16 15 Total: -1.00 -77.03 229.21 4.25 -72.78 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -0.76 Total: 12.76 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 6.32 Total: -1.95 kcal Atomic # 7 Polarization: -98.40 SS G_CDS: -3.06 Total: -101.46 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.04 Total: -25.66 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 1.80 Total: 43.53 kcal Total: -77.03 4.25 -72.78 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328273280.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.180 kcal (2) G-P(sol) polarization free energy of solvation -77.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds