Wall clock time and date at job start Mon Mar 30 2020 02:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34856 * 116.99970 * 2 1 4 4 O 1.21578 * 119.99894 * 359.97438 * 3 2 1 5 5 C 1.46933 * 120.00086 * 179.97438 * 3 2 1 6 6 C 1.40356 * 126.51787 * 0.02562 * 5 3 2 7 7 N 1.30854 * 108.85144 * 179.97438 * 6 5 3 8 8 N 1.39909 * 109.62451 * 359.73420 * 7 6 5 9 9 C 1.46504 * 125.97137 * 180.29938 * 8 7 6 10 10 C 1.37098 * 108.05712 * 0.43133 * 8 7 6 11 11 C 1.39653 * 126.74699 * 179.84454 * 10 8 7 12 12 H 1.08003 * 119.99923 * 144.33019 * 11 10 8 13 13 C 1.40586 * 120.00196 * 324.32551 * 11 10 8 14 14 N 1.30500 * 119.99894 * 335.15194 * 13 11 10 15 15 Si 1.86798 * 120.00004 * 155.15167 * 13 11 10 16 16 H 1.48499 * 109.47055 * 270.00222 * 15 13 11 17 17 H 1.48504 * 109.47138 * 30.00562 * 15 13 11 18 18 H 1.48501 * 109.47039 * 149.99860 * 15 13 11 19 19 H 1.09005 * 109.46709 * 60.00239 * 1 2 3 20 20 H 1.08998 * 109.46810 * 179.97438 * 1 2 3 21 21 H 1.08991 * 109.47316 * 300.00503 * 1 2 3 22 22 H 1.07994 * 125.57267 * 359.95776 * 6 5 3 23 23 H 1.08992 * 109.46770 * 275.39713 * 9 8 7 24 24 H 1.09002 * 109.46884 * 35.39761 * 9 8 7 25 25 H 1.08995 * 109.47065 * 155.39581 * 9 8 7 26 26 H 0.97002 * 119.99730 * 353.48544 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0643 1.2016 0.0000 4 8 1.4021 2.2212 -0.0005 5 6 3.5316 1.2785 0.0006 6 6 4.4247 0.1958 0.0006 7 7 5.6491 0.6576 0.0007 8 7 5.6236 2.0565 -0.0055 9 6 6.7934 2.9384 -0.0136 10 6 4.3127 2.4577 0.0004 11 6 3.8412 3.7722 0.0002 12 1 2.9409 4.0229 -0.5411 13 6 4.5384 4.7692 0.7048 14 7 5.2967 4.4443 1.7160 15 14 4.3793 6.5588 0.1936 16 1 5.4271 6.8825 -0.8077 17 1 3.0381 6.7860 -0.4022 18 1 4.5460 7.4304 1.3842 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 4.1469 -0.8478 0.0009 23 1 7.1453 3.0845 1.0075 24 1 7.5857 2.4855 -0.6097 25 1 6.5195 3.9013 -0.4448 26 1 5.3063 3.5304 2.0410 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535682025.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:32 Heat of formation + Delta-G solvation = -32.880632 kcal Electronic energy + Delta-G solvation = -13850.974927 eV Core-core repulsion = 11316.881480 eV Total energy + Delta-G solvation = -2534.093447 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.079 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.67505 -38.59954 -35.13881 -34.37226 -31.56370 -29.49433 -27.64154 -25.78121 -24.89511 -21.74010 -20.11691 -19.30058 -17.65240 -16.41694 -15.53544 -15.32958 -14.71475 -14.22786 -14.01406 -13.29434 -12.70212 -12.47231 -12.32466 -12.18022 -11.61671 -11.41116 -11.39614 -11.04675 -10.53679 -10.29072 -9.92377 -9.60068 -9.22678 -8.97603 -8.15073 -7.60445 -7.31955 -4.93532 2.74184 3.07401 3.14335 3.29108 3.39431 3.58010 3.85551 4.05520 4.36857 4.86926 5.62249 5.66466 5.70103 5.88702 6.09942 6.16396 6.37614 6.48192 6.71505 6.96474 7.29231 7.46575 7.63278 7.87510 7.94459 8.41229 8.69693 9.03985 9.21768 9.73977 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.031328 B = 0.012792 C = 0.009529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.552116 B = 2188.367901 C = 2937.560365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.373 6.373 3 C 0.538 3.462 4 O -0.542 6.542 5 C -0.401 4.401 6 C 0.107 3.893 7 N -0.362 5.362 8 N -0.425 5.425 9 C 0.128 3.872 10 C 0.305 3.695 11 C -0.488 4.488 12 H 0.109 0.891 13 C 0.037 3.963 14 N -0.784 5.784 15 Si 1.074 2.926 16 H -0.272 1.272 17 H -0.270 1.270 18 H -0.274 1.274 19 H 0.052 0.948 20 H 0.087 0.913 21 H 0.052 0.948 22 H 0.165 0.835 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.080 0.920 26 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.771 -1.357 -2.131 3.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.292 6.292 3 C 0.389 3.611 4 O -0.434 6.434 5 C -0.414 4.414 6 C -0.082 4.082 7 N -0.180 5.180 8 N -0.213 5.213 9 C -0.014 4.014 10 C 0.185 3.815 11 C -0.522 4.522 12 H 0.127 0.873 13 C -0.186 4.186 14 N -0.408 5.408 15 Si 0.896 3.104 16 H -0.197 1.197 17 H -0.195 1.195 18 H -0.199 1.199 19 H 0.071 0.929 20 H 0.105 0.895 21 H 0.071 0.929 22 H 0.182 0.818 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.098 0.902 26 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.041 0.142 -1.774 1.781 hybrid contribution -1.614 -1.441 -0.178 2.171 sum -1.655 -1.299 -1.952 2.870 Atomic orbital electron populations 1.22949 0.78703 1.01915 1.01662 1.86561 1.21346 1.34845 1.86423 1.20094 0.88058 0.80089 0.72886 1.90722 1.66697 1.35658 1.50295 1.18673 0.88644 0.93320 1.40763 1.23332 0.90199 0.98394 0.96305 1.76678 1.21428 0.89722 1.30176 1.48485 1.04590 1.03277 1.64940 1.21560 0.85599 0.92530 1.01760 1.18373 0.81997 0.93151 0.87999 1.20106 1.12060 0.90542 1.29532 0.87322 1.27347 0.90775 1.07861 0.92643 1.70381 1.29100 1.24560 1.16782 0.83503 0.78055 0.71730 0.77100 1.19736 1.19498 1.19866 0.92916 0.89462 0.92877 0.81779 0.92183 0.92073 0.90156 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 10.57 101.05 1.07 1.75 15 2 O -0.37 -7.85 10.41 -40.92 -0.43 -8.28 15 3 C 0.54 13.47 7.94 34.25 0.27 13.74 15 4 O -0.54 -14.68 15.15 -19.32 -0.29 -14.97 15 5 C -0.40 -10.45 6.19 -104.36 -0.65 -11.09 15 6 C 0.11 2.53 11.78 -17.17 -0.20 2.33 15 7 N -0.36 -8.93 12.48 30.73 0.38 -8.55 15 8 N -0.43 -10.65 3.78 -65.17 -0.25 -10.90 15 9 C 0.13 2.73 9.46 59.85 0.57 3.29 15 10 C 0.30 8.18 5.76 -83.77 -0.48 7.70 15 11 C -0.49 -12.94 8.20 -38.17 -0.31 -13.25 15 12 H 0.11 3.01 7.16 -52.48 -0.38 2.63 15 13 C 0.04 0.89 3.79 -17.23 -0.07 0.83 15 14 N -0.78 -19.52 11.51 55.58 0.64 -18.88 15 15 Si 1.07 20.65 30.01 -169.99 -5.10 15.55 15 16 H -0.27 -4.88 7.11 56.52 0.40 -4.47 15 17 H -0.27 -5.14 7.11 56.52 0.40 -4.74 15 18 H -0.27 -5.19 7.11 56.52 0.40 -4.79 15 19 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 20 H 0.09 1.05 8.14 -51.93 -0.42 0.63 15 21 H 0.05 0.85 8.14 -51.93 -0.42 0.43 15 22 H 0.17 3.25 8.06 -52.49 -0.42 2.82 15 23 H 0.06 1.27 7.17 -51.93 -0.37 0.90 15 24 H 0.06 1.14 8.14 -51.93 -0.42 0.72 15 25 H 0.08 1.70 6.58 -51.93 -0.34 1.36 15 26 H 0.29 7.79 6.97 -40.82 -0.28 7.50 15 LS Contribution 236.83 15.07 3.57 3.57 Total: -1.00 -30.20 236.83 -3.56 -33.76 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -2.28 Total: 3.41 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 0.20 Total: 5.30 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.78 Total: -38.33 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.72 Total: -23.25 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.10 Total: 15.55 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -30.20 -3.56 -33.76 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535682025.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.880 kcal (2) G-P(sol) polarization free energy of solvation -30.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds