Wall clock time and date at job start Mon Mar 30 2020 02:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34856 * 116.99970 * 2 1 4 4 O 1.21578 * 119.99894 * 359.97438 * 3 2 1 5 5 C 1.46933 * 120.00086 * 179.97438 * 3 2 1 6 6 C 1.40356 * 126.51787 * 0.02562 * 5 3 2 7 7 N 1.30854 * 108.85144 * 179.97438 * 6 5 3 8 8 N 1.39909 * 109.62451 * 359.73420 * 7 6 5 9 9 C 1.46504 * 125.97137 * 180.29938 * 8 7 6 10 10 C 1.37098 * 108.05712 * 0.43133 * 8 7 6 11 11 C 1.39653 * 126.74699 * 179.84454 * 10 8 7 12 12 H 1.08003 * 119.99923 * 144.33019 * 11 10 8 13 13 C 1.40586 * 120.00196 * 324.32551 * 11 10 8 14 14 N 1.30500 * 119.99894 * 335.15194 * 13 11 10 15 15 Si 1.86798 * 120.00004 * 155.15167 * 13 11 10 16 16 H 1.48499 * 109.47055 * 270.00222 * 15 13 11 17 17 H 1.48504 * 109.47138 * 30.00562 * 15 13 11 18 18 H 1.48501 * 109.47039 * 149.99860 * 15 13 11 19 19 H 1.09005 * 109.46709 * 60.00239 * 1 2 3 20 20 H 1.08998 * 109.46810 * 179.97438 * 1 2 3 21 21 H 1.08991 * 109.47316 * 300.00503 * 1 2 3 22 22 H 1.07994 * 125.57267 * 359.95776 * 6 5 3 23 23 H 1.08992 * 109.46770 * 275.39713 * 9 8 7 24 24 H 1.09002 * 109.46884 * 35.39761 * 9 8 7 25 25 H 1.08995 * 109.47065 * 155.39581 * 9 8 7 26 26 H 0.97002 * 119.99730 * 353.48544 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0643 1.2016 0.0000 4 8 1.4021 2.2212 -0.0005 5 6 3.5316 1.2785 0.0006 6 6 4.4247 0.1958 0.0006 7 7 5.6491 0.6576 0.0007 8 7 5.6236 2.0565 -0.0055 9 6 6.7934 2.9384 -0.0136 10 6 4.3127 2.4577 0.0004 11 6 3.8412 3.7722 0.0002 12 1 2.9409 4.0229 -0.5411 13 6 4.5384 4.7692 0.7048 14 7 5.2967 4.4443 1.7160 15 14 4.3793 6.5588 0.1936 16 1 5.4271 6.8825 -0.8077 17 1 3.0381 6.7860 -0.4022 18 1 4.5460 7.4304 1.3842 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 4.1469 -0.8478 0.0009 23 1 7.1453 3.0845 1.0075 24 1 7.5857 2.4855 -0.6097 25 1 6.5195 3.9013 -0.4448 26 1 5.3063 3.5304 2.0410 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535682025.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:32 Heat of formation + Delta-G solvation = -52.752486 kcal Electronic energy + Delta-G solvation = -13851.836635 eV Core-core repulsion = 11316.881480 eV Total energy + Delta-G solvation = -2534.955156 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.079 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.56934 -40.42489 -36.97995 -36.26351 -33.41289 -31.42628 -29.26365 -27.43235 -26.78392 -23.58971 -21.99764 -21.14032 -19.53389 -18.27538 -17.32646 -17.04795 -16.54081 -15.92949 -15.74672 -15.05329 -14.49698 -14.21761 -14.04280 -13.94243 -13.40911 -13.21058 -12.87602 -12.65914 -12.15544 -11.91786 -11.58067 -11.50425 -11.04153 -10.93046 -10.07079 -9.54315 -9.28201 -6.93706 0.86252 1.36641 1.50772 1.66955 1.82144 1.83939 2.24792 2.33834 2.48787 2.92943 3.91925 4.39535 4.39869 4.44531 4.46031 4.54319 4.66974 4.72933 4.87685 5.09162 5.33041 5.56907 5.69878 5.84672 6.08498 6.44739 6.75265 7.12620 7.32013 7.75830 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.031328 B = 0.012792 C = 0.009529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.552116 B = 2188.367901 C = 2937.560365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.370 6.370 3 C 0.537 3.463 4 O -0.573 6.573 5 C -0.432 4.432 6 C 0.114 3.886 7 N -0.371 5.371 8 N -0.431 5.431 9 C 0.126 3.874 10 C 0.278 3.722 11 C -0.511 4.511 12 H 0.088 0.912 13 C 0.013 3.987 14 N -0.785 5.785 15 Si 1.122 2.878 16 H -0.246 1.246 17 H -0.271 1.271 18 H -0.266 1.266 19 H 0.053 0.947 20 H 0.136 0.864 21 H 0.051 0.949 22 H 0.202 0.798 23 H 0.059 0.941 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.676 -1.493 -2.434 3.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.288 6.288 3 C 0.390 3.610 4 O -0.468 6.468 5 C -0.445 4.445 6 C -0.075 4.075 7 N -0.189 5.189 8 N -0.218 5.218 9 C -0.015 4.015 10 C 0.157 3.843 11 C -0.545 4.545 12 H 0.106 0.894 13 C -0.206 4.206 14 N -0.408 5.408 15 Si 0.937 3.063 16 H -0.170 1.170 17 H -0.196 1.196 18 H -0.190 1.190 19 H 0.072 0.928 20 H 0.154 0.846 21 H 0.069 0.931 22 H 0.218 0.782 23 H 0.077 0.923 24 H 0.106 0.894 25 H 0.097 0.903 26 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.075 -0.044 -2.075 2.077 hybrid contribution -1.725 -1.529 -0.071 2.306 sum -1.650 -1.573 -2.146 3.131 Atomic orbital electron populations 1.23392 0.75713 1.05147 1.01692 1.86516 1.24179 1.32420 1.85657 1.20074 0.87971 0.80741 0.72258 1.90692 1.67343 1.36971 1.51763 1.19138 0.89827 0.94115 1.41398 1.23829 0.89211 0.99598 0.94881 1.76632 1.22035 0.89672 1.30531 1.48752 1.04822 1.03695 1.64578 1.21700 0.85258 0.92353 1.02182 1.18727 0.83174 0.93816 0.88538 1.20136 1.12200 0.91548 1.30639 0.89411 1.28673 0.89391 1.11049 0.91518 1.70511 1.29756 1.23255 1.17270 0.82948 0.78728 0.67013 0.77625 1.16994 1.19562 1.19040 0.92801 0.84594 0.93053 0.78175 0.92295 0.89420 0.90270 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.02 10.57 113.37 1.20 2.22 15 2 O -0.37 -15.05 10.41 -57.69 -0.60 -15.65 15 3 C 0.54 26.98 7.94 70.10 0.56 27.54 15 4 O -0.57 -31.56 15.15 19.58 0.30 -31.27 15 5 C -0.43 -22.59 6.19 -19.70 -0.12 -22.71 15 6 C 0.11 5.27 11.78 85.35 1.01 6.28 15 7 N -0.37 -17.95 12.48 -56.69 -0.71 -18.66 15 8 N -0.43 -21.49 3.78 -360.11 -1.36 -22.85 15 9 C 0.13 5.29 9.46 127.77 1.21 6.50 15 10 C 0.28 15.12 5.76 39.45 0.23 15.35 15 11 C -0.51 -27.58 8.20 23.18 0.19 -27.39 15 12 H 0.09 5.03 7.16 -2.91 -0.02 5.01 15 13 C 0.01 0.62 3.79 85.46 0.32 0.95 15 14 N -0.79 -39.00 11.51 21.94 0.25 -38.75 15 15 Si 1.12 40.62 30.01 68.60 2.06 42.68 15 16 H -0.25 -7.90 7.11 99.48 0.71 -7.20 15 17 H -0.27 -9.78 7.11 99.48 0.71 -9.07 15 18 H -0.27 -9.28 7.11 99.48 0.71 -8.57 15 19 H 0.05 1.61 8.14 -2.38 -0.02 1.59 15 20 H 0.14 2.76 8.14 -2.39 -0.02 2.74 15 21 H 0.05 1.57 8.14 -2.39 -0.02 1.55 15 22 H 0.20 7.44 8.06 -2.91 -0.02 7.42 15 23 H 0.06 2.47 7.17 -2.39 -0.02 2.45 15 24 H 0.09 3.14 8.14 -2.39 -0.02 3.12 15 25 H 0.08 3.30 6.58 -2.39 -0.02 3.28 15 26 H 0.28 14.83 6.97 -92.71 -0.65 14.19 15 Total: -1.00 -65.10 236.83 5.85 -59.26 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 1.32 Total: 16.51 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 4.59 Total: 8.73 kcal Atomic # 7 Polarization: -78.44 SS G_CDS: -1.82 Total: -80.26 kcal Atomic # 8 Polarization: -46.61 SS G_CDS: -0.30 Total: -46.92 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.06 Total: 42.68 kcal Total: -65.10 5.85 -59.26 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535682025.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.503 kcal (2) G-P(sol) polarization free energy of solvation -65.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds