Wall clock time and date at job start Mon Mar 30 2020 02:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38266 * 119.98624 * 2 1 4 4 C 1.38227 * 120.05026 * 180.02562 * 3 2 1 5 5 C 1.38218 * 120.02588 * 359.97438 * 4 3 2 6 6 C 1.38434 * 119.97290 * 359.69986 * 5 4 3 7 7 F 1.35100 * 120.02576 * 180.31790 * 6 5 4 8 8 C 1.38174 * 119.98882 * 179.97438 * 2 1 3 9 9 C 1.50703 * 120.01021 * 0.02562 * 8 2 1 10 10 H 1.09000 * 109.47088 * 344.99488 * 9 8 2 11 11 O 1.42898 * 109.46861 * 224.99931 * 9 8 2 12 12 C 1.50701 * 109.47151 * 105.00349 * 9 8 2 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 9 8 14 14 C 1.37871 * 119.99694 * 180.27762 * 12 9 8 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 9 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 9 17 17 H 1.48504 * 109.47266 * 60.00049 * 16 14 12 18 18 H 1.48504 * 109.46970 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47383 * 299.99456 * 16 14 12 20 20 H 1.08995 * 109.47055 * 270.02393 * 1 2 3 21 21 H 1.09002 * 109.47293 * 30.01919 * 1 2 3 22 22 H 1.09000 * 109.47116 * 150.02156 * 1 2 3 23 23 H 1.07997 * 119.97663 * 359.97438 * 3 2 1 24 24 H 1.08003 * 119.98546 * 179.97438 * 4 3 2 25 25 H 1.08001 * 120.01212 * 180.02562 * 5 4 3 26 26 H 0.96702 * 114.00549 * 300.00146 * 11 9 8 27 27 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1976 0.0000 4 6 3.5803 1.1991 -0.0005 5 6 4.2733 0.0032 -0.0005 6 6 3.5824 -1.1964 0.0063 7 9 4.2587 -2.3659 0.0128 8 6 2.1976 -1.1968 0.0005 9 6 1.4441 -2.5019 0.0005 10 1 0.4027 -2.3201 0.2662 11 8 2.0306 -3.3905 0.9536 12 6 1.5120 -3.1211 -1.3717 13 1 2.0469 -2.6195 -2.1646 14 6 0.8859 -4.3249 -1.6164 15 7 0.2343 -4.9355 -0.6510 16 14 0.9635 -5.0886 -3.3194 17 1 2.3807 -5.3405 -3.6849 18 1 0.2169 -6.3724 -3.3206 19 1 0.3550 -4.1608 -4.3063 20 1 -0.3633 0.0004 1.0276 21 1 -0.3634 0.8898 -0.5141 22 1 -0.3633 -0.8902 -0.5135 23 1 1.6575 2.1325 -0.0004 24 1 4.1190 2.1352 -0.0010 25 1 5.3533 0.0047 -0.0005 26 1 2.9591 -3.5971 0.7794 27 1 -0.2065 -5.7822 -0.8233 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535686389.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:49 Heat of formation + Delta-G solvation = -79.851103 kcal Electronic energy + Delta-G solvation = -13888.546617 eV Core-core repulsion = 11332.496416 eV Total energy + Delta-G solvation = -2556.050201 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.23456 -38.80519 -35.45739 -32.31460 -32.12971 -30.21664 -26.89626 -26.23842 -23.27400 -21.21141 -20.39408 -17.08133 -16.53775 -15.93330 -15.55817 -14.93105 -14.60244 -14.17379 -13.32544 -13.10641 -12.97430 -12.73528 -12.36777 -11.69821 -11.45137 -11.32067 -11.09013 -10.94430 -10.88805 -10.59030 -10.21610 -9.13748 -8.66068 -8.36445 -8.11572 -7.89061 -6.03381 -4.22233 1.70751 1.81519 3.29297 3.33803 3.36774 4.10996 4.39997 4.87803 5.20045 5.24179 5.29339 5.53852 5.69441 5.87230 6.01484 6.14640 6.29741 6.39725 6.48825 6.70481 6.71695 6.79695 7.04969 7.49646 7.65673 7.80935 8.09577 8.78543 9.35066 9.53622 11.00250 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.035531 B = 0.011486 C = 0.010584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.848566 B = 2437.138660 C = 2644.871489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.061 4.061 3 C -0.137 4.137 4 C -0.114 4.114 5 C -0.167 4.167 6 C 0.104 3.896 7 F -0.134 7.134 8 C -0.106 4.106 9 C 0.257 3.743 10 H 0.077 0.923 11 O -0.566 6.566 12 C -0.563 4.563 13 H 0.055 0.945 14 C 0.081 3.919 15 N -0.859 5.859 16 Si 0.893 3.107 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 H 0.068 0.932 21 H 0.060 0.940 22 H 0.086 0.914 23 H 0.119 0.881 24 H 0.121 0.879 25 H 0.124 0.876 26 H 0.350 0.650 27 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.534 9.806 0.709 10.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.061 4.061 3 C -0.155 4.155 4 C -0.132 4.132 5 C -0.186 4.186 6 C 0.084 3.916 7 F -0.112 7.112 8 C -0.107 4.107 9 C 0.200 3.800 10 H 0.095 0.905 11 O -0.372 6.372 12 C -0.601 4.601 13 H 0.074 0.926 14 C -0.126 4.126 15 N -0.494 5.494 16 Si 0.720 3.280 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.201 1.201 20 H 0.086 0.914 21 H 0.079 0.921 22 H 0.105 0.895 23 H 0.137 0.863 24 H 0.139 0.861 25 H 0.142 0.858 26 H 0.198 0.802 27 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.842 9.620 1.031 10.084 hybrid contribution 0.828 -0.589 -1.290 1.642 sum 3.669 9.031 -0.259 9.752 Atomic orbital electron populations 1.20855 0.90932 1.03385 1.02242 1.19650 0.96459 0.91643 0.98380 1.20977 0.94105 0.97372 1.03080 1.20724 0.94131 0.96831 1.01524 1.20994 1.00041 0.91640 1.05943 1.17534 0.89880 0.80950 1.03203 1.91339 1.79798 1.46296 1.93784 1.21472 0.92539 0.99604 0.97077 1.18588 0.92214 0.79997 0.89197 0.90520 1.86555 1.29098 1.68114 1.53437 1.21456 1.36179 1.06614 0.95812 0.92633 1.25018 0.94097 0.96667 0.96780 1.70059 1.31850 1.16025 1.31477 0.86669 0.78420 0.78531 0.84428 1.20032 1.21060 1.20053 0.91370 0.92078 0.89540 0.86276 0.86063 0.85753 0.80200 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.98 9.24 36.01 0.33 -1.65 15 2 C -0.06 -1.16 5.88 -104.63 -0.62 -1.77 15 3 C -0.14 -2.17 9.70 -39.58 -0.38 -2.55 15 4 C -0.11 -1.72 10.04 -39.59 -0.40 -2.11 15 5 C -0.17 -2.85 10.03 -39.52 -0.40 -3.24 15 6 C 0.10 2.16 7.03 -39.42 -0.28 1.89 15 7 F -0.13 -2.91 14.47 2.25 0.03 -2.88 15 8 C -0.11 -2.35 4.91 -104.55 -0.51 -2.87 15 9 C 0.26 6.72 2.53 -29.03 -0.07 6.65 15 10 H 0.08 2.08 5.92 -51.93 -0.31 1.77 15 11 O -0.57 -15.56 12.63 -35.23 -0.45 -16.00 15 12 C -0.56 -15.77 8.68 -34.44 -0.30 -16.06 15 13 H 0.06 1.56 7.74 -52.49 -0.41 1.15 15 14 C 0.08 2.28 5.40 -17.82 -0.10 2.18 15 15 N -0.86 -25.37 12.84 55.43 0.71 -24.66 15 16 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 15 17 H -0.27 -6.58 7.11 56.52 0.40 -6.18 15 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 15 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 20 H 0.07 1.06 8.14 -51.93 -0.42 0.64 15 21 H 0.06 0.84 8.09 -51.93 -0.42 0.42 15 22 H 0.09 1.67 6.39 -51.93 -0.33 1.34 15 23 H 0.12 1.51 8.06 -52.49 -0.42 1.08 15 24 H 0.12 1.40 8.06 -52.48 -0.42 0.97 15 25 H 0.12 1.78 8.06 -52.49 -0.42 1.36 15 26 H 0.35 9.04 6.33 45.56 0.29 9.33 15 27 H 0.26 7.33 8.31 -40.82 -0.34 7.00 15 LS Contribution 239.34 15.07 3.61 3.61 Total: -1.00 -30.74 239.34 -5.84 -36.58 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -2.00 Total: 6.48 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -2.72 Total: -19.54 kcal Atomic # 7 Polarization: -25.37 SS G_CDS: 0.71 Total: -24.66 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.45 Total: -16.00 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.03 Total: -2.88 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -30.74 -5.84 -36.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535686389.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.275 kcal (2) G-P(sol) polarization free energy of solvation -30.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds