Wall clock time and date at job start Mon Mar 30 2020 02:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38262 * 119.98980 * 2 1 4 4 C 1.38227 * 120.05195 * 180.02562 * 3 2 1 5 5 C 1.38219 * 120.02402 * 0.25898 * 4 3 2 6 6 C 1.38438 * 119.97312 * 359.48405 * 5 4 3 7 7 F 1.35104 * 120.02404 * 180.25480 * 6 5 4 8 8 C 1.38177 * 119.98533 * 180.02562 * 2 1 3 9 9 C 1.50703 * 120.01149 * 0.02562 * 8 2 1 10 10 H 1.08994 * 109.47101 * 14.99960 * 9 8 2 11 11 O 1.42904 * 109.46976 * 135.00011 * 9 8 2 12 12 C 1.50698 * 109.47171 * 254.99647 * 9 8 2 13 13 H 1.07999 * 119.99941 * 0.02562 * 12 9 8 14 14 C 1.37877 * 119.99902 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00272 * 0.02562 * 14 12 9 16 16 Si 1.86802 * 119.99884 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47204 * 60.00616 * 16 14 12 18 18 H 1.48503 * 109.47147 * 180.02562 * 16 14 12 19 19 H 1.48490 * 109.47463 * 300.00319 * 16 14 12 20 20 H 1.09000 * 109.47049 * 90.00190 * 1 2 3 21 21 H 1.08997 * 109.47602 * 210.00554 * 1 2 3 22 22 H 1.09003 * 109.47141 * 330.00468 * 1 2 3 23 23 H 1.07999 * 119.97792 * 359.97438 * 3 2 1 24 24 H 1.08002 * 119.98464 * 179.97438 * 4 3 2 25 25 H 1.08004 * 120.01035 * 179.74654 * 5 4 3 26 26 H 0.96700 * 113.99728 * 59.99900 * 11 9 8 27 27 H 0.96998 * 120.00376 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1975 0.0000 4 6 3.5804 1.1990 -0.0005 5 6 4.2733 0.0031 -0.0065 6 6 3.5824 -1.1966 -0.0011 7 9 4.2586 -2.3662 -0.0017 8 6 2.1976 -1.1968 -0.0005 9 6 1.4440 -2.5019 -0.0017 10 1 0.4028 -2.3200 -0.2679 11 8 2.0312 -3.3901 -0.9548 12 6 1.5108 -3.1218 1.3703 13 1 2.0451 -2.6206 2.1638 14 6 0.8889 -4.3282 1.6127 15 7 0.2378 -4.9383 0.6465 16 14 0.9711 -5.0962 3.3135 17 1 0.3609 -4.1729 4.3036 18 1 0.2286 -6.3823 3.3123 19 1 2.3893 -5.3444 3.6766 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5139 22 1 -0.3633 0.8900 0.5138 23 1 1.6576 2.1325 -0.0004 24 1 4.1191 2.1351 -0.0010 25 1 5.3533 0.0045 -0.0110 26 1 2.9595 -3.5968 -0.7799 27 1 -0.1994 -5.7872 0.8169 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535686390.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:51 Heat of formation + Delta-G solvation = -79.861286 kcal Electronic energy + Delta-G solvation = -13888.879529 eV Core-core repulsion = 11332.828886 eV Total energy + Delta-G solvation = -2556.050643 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.23138 -38.80515 -35.45786 -32.31473 -32.12805 -30.21668 -26.89674 -26.23713 -23.27398 -21.21038 -20.39331 -17.07905 -16.53747 -15.93306 -15.56090 -14.92821 -14.60034 -14.17319 -13.32659 -13.10725 -12.97177 -12.73497 -12.36748 -11.69665 -11.45252 -11.32004 -11.09063 -10.94514 -10.88745 -10.58993 -10.21607 -9.13629 -8.65935 -8.36755 -8.11564 -7.89027 -6.03333 -4.22143 1.70780 1.81514 3.29339 3.33847 3.36841 4.11018 4.40041 4.87839 5.20065 5.24199 5.29362 5.53879 5.69430 5.87260 6.01479 6.14646 6.29806 6.39651 6.48859 6.70486 6.71709 6.79701 7.04999 7.49676 7.65652 7.81015 8.09603 8.78567 9.34909 9.53656 11.00294 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.035574 B = 0.011487 C = 0.010582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.911173 B = 2436.873104 C = 2645.403930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.061 4.061 3 C -0.137 4.137 4 C -0.114 4.114 5 C -0.167 4.167 6 C 0.104 3.896 7 F -0.134 7.134 8 C -0.106 4.106 9 C 0.257 3.743 10 H 0.077 0.923 11 O -0.566 6.566 12 C -0.563 4.563 13 H 0.055 0.945 14 C 0.081 3.919 15 N -0.859 5.859 16 Si 0.893 3.107 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 H 0.068 0.932 21 H 0.086 0.914 22 H 0.060 0.940 23 H 0.119 0.881 24 H 0.121 0.879 25 H 0.124 0.876 26 H 0.350 0.650 27 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.534 9.805 -0.708 10.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.061 4.061 3 C -0.155 4.155 4 C -0.132 4.132 5 C -0.186 4.186 6 C 0.084 3.916 7 F -0.112 7.112 8 C -0.107 4.107 9 C 0.200 3.800 10 H 0.095 0.905 11 O -0.372 6.372 12 C -0.601 4.601 13 H 0.074 0.926 14 C -0.126 4.126 15 N -0.494 5.494 16 Si 0.720 3.280 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.200 1.200 20 H 0.086 0.914 21 H 0.105 0.895 22 H 0.079 0.921 23 H 0.137 0.863 24 H 0.139 0.861 25 H 0.142 0.858 26 H 0.198 0.802 27 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.841 9.620 -1.030 10.084 hybrid contribution 0.834 -0.594 1.289 1.646 sum 3.675 9.026 0.258 9.749 Atomic orbital electron populations 1.20855 0.90931 1.03386 1.02244 1.19650 0.96459 0.91642 0.98366 1.20976 0.94105 0.97372 1.03092 1.20725 0.94131 0.96830 1.01512 1.20996 1.00040 0.91640 1.05960 1.17536 0.89880 0.80951 1.03184 1.91343 1.79800 1.46294 1.93782 1.21471 0.92541 0.99601 0.97094 1.18586 0.92203 0.80007 0.89200 0.90517 1.86557 1.29085 1.68138 1.53400 1.21457 1.36321 1.06478 0.95813 0.92633 1.25019 0.94091 0.96680 0.96766 1.70059 1.31961 1.15924 1.31464 0.86668 0.78424 0.78540 0.84418 1.20052 1.21062 1.20037 0.91370 0.89537 0.92077 0.86277 0.86063 0.85754 0.80216 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.98 9.23 36.01 0.33 -1.65 15 2 C -0.06 -1.15 5.88 -104.64 -0.62 -1.77 15 3 C -0.14 -2.17 9.70 -39.58 -0.38 -2.55 15 4 C -0.11 -1.71 10.04 -39.59 -0.40 -2.11 15 5 C -0.17 -2.85 10.03 -39.51 -0.40 -3.25 15 6 C 0.10 2.17 7.03 -39.42 -0.28 1.89 15 7 F -0.13 -2.91 14.48 2.25 0.03 -2.88 15 8 C -0.11 -2.36 4.91 -104.55 -0.51 -2.87 15 9 C 0.26 6.72 2.53 -29.03 -0.07 6.65 15 10 H 0.08 2.08 5.93 -51.93 -0.31 1.77 15 11 O -0.57 -15.55 12.63 -35.23 -0.44 -16.00 15 12 C -0.56 -15.77 8.67 -34.44 -0.30 -16.06 15 13 H 0.06 1.56 7.74 -52.49 -0.41 1.15 15 14 C 0.08 2.28 5.40 -17.82 -0.10 2.18 15 15 N -0.86 -25.37 12.84 55.43 0.71 -24.66 15 16 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 15 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 15 19 H -0.27 -6.59 7.11 56.52 0.40 -6.19 15 20 H 0.07 1.06 8.14 -51.93 -0.42 0.64 15 21 H 0.09 1.67 6.39 -51.93 -0.33 1.34 15 22 H 0.06 0.84 8.09 -51.93 -0.42 0.42 15 23 H 0.12 1.51 8.06 -52.49 -0.42 1.08 15 24 H 0.12 1.40 8.06 -52.49 -0.42 0.97 15 25 H 0.12 1.78 8.06 -52.48 -0.42 1.36 15 26 H 0.35 9.04 6.34 45.56 0.29 9.33 15 27 H 0.26 7.33 8.31 -40.82 -0.34 7.00 15 LS Contribution 239.33 15.07 3.61 3.61 Total: -1.00 -30.74 239.33 -5.84 -36.57 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -2.00 Total: 6.47 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -2.72 Total: -19.54 kcal Atomic # 7 Polarization: -25.37 SS G_CDS: 0.71 Total: -24.66 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.44 Total: -16.00 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.03 Total: -2.88 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -30.74 -5.84 -36.57 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535686390.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.288 kcal (2) G-P(sol) polarization free energy of solvation -30.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds