Wall clock time and date at job start Mon Mar 30 2020 02:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38262 * 119.98980 * 2 1 4 4 C 1.38227 * 120.05195 * 180.02562 * 3 2 1 5 5 C 1.38219 * 120.02402 * 0.25898 * 4 3 2 6 6 C 1.38438 * 119.97312 * 359.48405 * 5 4 3 7 7 F 1.35104 * 120.02404 * 180.25480 * 6 5 4 8 8 C 1.38177 * 119.98533 * 180.02562 * 2 1 3 9 9 C 1.50703 * 120.01149 * 0.02562 * 8 2 1 10 10 H 1.08994 * 109.47101 * 14.99960 * 9 8 2 11 11 O 1.42904 * 109.46976 * 135.00011 * 9 8 2 12 12 C 1.50698 * 109.47171 * 254.99647 * 9 8 2 13 13 H 1.07999 * 119.99941 * 0.02562 * 12 9 8 14 14 C 1.37877 * 119.99902 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00272 * 0.02562 * 14 12 9 16 16 Si 1.86802 * 119.99884 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47204 * 60.00616 * 16 14 12 18 18 H 1.48503 * 109.47147 * 180.02562 * 16 14 12 19 19 H 1.48490 * 109.47463 * 300.00319 * 16 14 12 20 20 H 1.09000 * 109.47049 * 90.00190 * 1 2 3 21 21 H 1.08997 * 109.47602 * 210.00554 * 1 2 3 22 22 H 1.09003 * 109.47141 * 330.00468 * 1 2 3 23 23 H 1.07999 * 119.97792 * 359.97438 * 3 2 1 24 24 H 1.08002 * 119.98464 * 179.97438 * 4 3 2 25 25 H 1.08004 * 120.01035 * 179.74654 * 5 4 3 26 26 H 0.96700 * 113.99728 * 59.99900 * 11 9 8 27 27 H 0.96998 * 120.00376 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1975 0.0000 4 6 3.5804 1.1990 -0.0005 5 6 4.2733 0.0031 -0.0065 6 6 3.5824 -1.1966 -0.0011 7 9 4.2586 -2.3662 -0.0017 8 6 2.1976 -1.1968 -0.0005 9 6 1.4440 -2.5019 -0.0017 10 1 0.4028 -2.3200 -0.2679 11 8 2.0312 -3.3901 -0.9548 12 6 1.5108 -3.1218 1.3703 13 1 2.0451 -2.6206 2.1638 14 6 0.8889 -4.3282 1.6127 15 7 0.2378 -4.9383 0.6465 16 14 0.9711 -5.0962 3.3135 17 1 0.3609 -4.1729 4.3036 18 1 0.2286 -6.3823 3.3123 19 1 2.3893 -5.3444 3.6766 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5139 22 1 -0.3633 0.8900 0.5138 23 1 1.6576 2.1325 -0.0004 24 1 4.1191 2.1351 -0.0010 25 1 5.3533 0.0045 -0.0110 26 1 2.9595 -3.5968 -0.7799 27 1 -0.1994 -5.7872 0.8169 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535686390.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:51 Heat of formation + Delta-G solvation = -100.585427 kcal Electronic energy + Delta-G solvation = -13889.778196 eV Core-core repulsion = 11332.828886 eV Total energy + Delta-G solvation = -2556.949309 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.82586 -40.25355 -37.41146 -34.33446 -33.70652 -31.76616 -28.69250 -27.77588 -25.11716 -22.68030 -21.96518 -19.18527 -18.01536 -17.50488 -17.15940 -16.78018 -16.45829 -15.80262 -14.99343 -14.82531 -14.39431 -14.26880 -14.05681 -13.42952 -13.08242 -12.95904 -12.79879 -12.64692 -12.54407 -12.16865 -12.10249 -11.06628 -10.78497 -10.38173 -9.51257 -9.44581 -8.17903 -6.44917 0.33126 0.41099 1.36122 1.38692 1.46965 2.34955 2.75085 3.06689 3.46212 3.90739 4.01404 4.17300 4.30104 4.39692 4.48497 4.76126 4.82815 4.94135 5.11035 5.26152 5.32679 5.45817 5.53260 5.62596 5.80700 5.99685 6.13757 6.61772 7.22441 7.39317 8.85512 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.035574 B = 0.011487 C = 0.010582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.911173 B = 2436.873104 C = 2645.403930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.076 4.076 3 C -0.126 4.126 4 C -0.095 4.095 5 C -0.164 4.164 6 C 0.070 3.930 7 F -0.151 7.151 8 C -0.146 4.146 9 C 0.256 3.744 10 H 0.054 0.946 11 O -0.585 6.585 12 C -0.574 4.574 13 H 0.048 0.952 14 C 0.028 3.972 15 N -0.897 5.897 16 Si 0.960 3.040 17 H -0.264 1.264 18 H -0.278 1.278 19 H -0.272 1.272 20 H 0.076 0.924 21 H 0.049 0.951 22 H 0.096 0.904 23 H 0.162 0.838 24 H 0.172 0.828 25 H 0.153 0.847 26 H 0.353 0.647 27 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.388 12.454 0.146 13.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.076 4.076 3 C -0.144 4.144 4 C -0.113 4.113 5 C -0.182 4.182 6 C 0.051 3.949 7 F -0.129 7.129 8 C -0.147 4.147 9 C 0.199 3.801 10 H 0.072 0.928 11 O -0.392 6.392 12 C -0.611 4.611 13 H 0.066 0.934 14 C -0.175 4.175 15 N -0.534 5.534 16 Si 0.784 3.216 17 H -0.189 1.189 18 H -0.203 1.203 19 H -0.198 1.198 20 H 0.095 0.905 21 H 0.068 0.932 22 H 0.115 0.885 23 H 0.180 0.820 24 H 0.189 0.811 25 H 0.170 0.830 26 H 0.201 0.799 27 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.698 12.283 -0.172 12.829 hybrid contribution 0.592 -1.290 0.974 1.721 sum 4.290 10.993 0.802 11.827 Atomic orbital electron populations 1.20841 0.90192 1.03272 1.02785 1.19964 0.97345 0.91841 0.98465 1.21442 0.94791 0.97485 1.00647 1.21345 0.94047 0.97877 0.98032 1.21380 1.01564 0.90694 1.04574 1.17960 0.89771 0.81884 1.05264 1.91282 1.79932 1.47551 1.94174 1.21178 0.93375 0.98833 1.01327 1.18385 0.91788 0.82008 0.87871 0.92848 1.86491 1.29402 1.69191 1.54127 1.21721 1.35886 1.06880 0.96660 0.93417 1.25889 0.93606 0.97195 1.00785 1.70186 1.33060 1.16402 1.33711 0.85603 0.78489 0.77881 0.79610 1.18910 1.20264 1.19754 0.90543 0.93196 0.88482 0.82024 0.81066 0.82972 0.79929 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.79 9.23 71.24 0.66 -3.13 15 2 C -0.08 -2.78 5.88 -19.87 -0.12 -2.89 15 3 C -0.13 -3.42 9.70 22.27 0.22 -3.21 15 4 C -0.10 -2.38 10.04 22.26 0.22 -2.16 15 5 C -0.16 -5.08 10.03 22.31 0.22 -4.86 15 6 C 0.07 2.93 7.03 22.37 0.16 3.09 15 7 F -0.15 -6.77 14.48 44.97 0.65 -6.12 15 8 C -0.15 -6.61 4.91 -19.82 -0.10 -6.71 15 9 C 0.26 14.06 2.53 29.10 0.07 14.13 15 10 H 0.05 3.10 5.93 -2.39 -0.01 3.09 15 11 O -0.58 -33.91 12.63 -148.98 -1.88 -35.79 15 12 C -0.57 -33.34 8.67 25.60 0.22 -33.12 15 13 H 0.05 2.77 7.74 -2.91 -0.02 2.74 15 14 C 0.03 1.62 5.40 84.65 0.46 2.08 15 15 N -0.90 -54.87 12.84 21.45 0.28 -54.59 15 16 Si 0.96 44.81 29.54 68.60 2.03 46.84 15 17 H -0.26 -11.78 7.11 99.48 0.71 -11.07 15 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 19 H -0.27 -12.50 7.11 99.48 0.71 -11.79 15 20 H 0.08 2.34 8.14 -2.39 -0.02 2.32 15 21 H 0.05 2.00 6.39 -2.39 -0.02 1.99 15 22 H 0.10 2.43 8.09 -2.39 -0.02 2.41 15 23 H 0.16 3.04 8.06 -2.91 -0.02 3.02 15 24 H 0.17 2.65 8.06 -2.91 -0.02 2.63 15 25 H 0.15 3.80 8.06 -2.91 -0.02 3.77 15 26 H 0.35 19.31 6.34 -74.06 -0.47 18.84 15 27 H 0.26 15.21 8.31 -92.71 -0.77 14.44 15 Total: -1.00 -69.66 239.33 3.81 -65.86 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 0.72 Total: 20.58 kcal Atomic # 6 Polarization: -38.80 SS G_CDS: 2.02 Total: -36.78 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.28 Total: -54.59 kcal Atomic # 8 Polarization: -33.91 SS G_CDS: -1.88 Total: -35.79 kcal Atomic # 9 Polarization: -6.77 SS G_CDS: 0.65 Total: -6.12 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -69.66 3.81 -65.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535686390.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.729 kcal (2) G-P(sol) polarization free energy of solvation -69.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds