Wall clock time and date at job start Mon Mar 30 2020 02:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50698 * 109.47592 * 179.97438 * 3 2 1 5 5 C 1.33391 * 125.20268 * 89.71743 * 4 3 2 6 6 C 1.38426 * 114.92155 * 179.86210 * 5 4 3 7 7 C 1.33387 * 114.91807 * 0.43157 * 6 5 4 8 8 C 1.50704 * 125.19833 * 179.78989 * 7 6 5 9 9 C 1.50699 * 109.46928 * 90.00226 * 8 7 6 10 10 H 1.08000 * 120.00116 * 0.02562 * 9 8 7 11 11 C 1.37874 * 119.99962 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00364 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00174 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.47186 * 89.99996 * 13 11 9 15 15 H 1.48496 * 109.47298 * 210.00042 * 13 11 9 16 16 H 1.48496 * 109.47146 * 330.00091 * 13 11 9 17 17 S 1.75878 * 109.59734 * 359.77041 * 7 6 5 18 18 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 19 19 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 20 20 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 22 22 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 23 23 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 24 24 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 25 25 H 1.08005 * 122.53906 * 0.02562 * 5 4 3 26 26 H 1.07995 * 122.53543 * 180.20385 * 6 5 4 27 27 H 1.08999 * 109.46724 * 209.99663 * 8 7 6 28 28 H 1.08998 * 109.47189 * 330.00070 * 8 7 6 29 29 H 0.96994 * 120.00326 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3164 1.4369 -1.0890 6 6 5.6784 1.4412 -0.8414 7 6 6.0149 1.4411 0.4493 8 6 7.4257 1.4408 0.9792 9 6 7.8962 2.8615 1.1559 10 1 7.2392 3.6825 0.9096 11 6 9.1651 3.1132 1.6330 12 7 9.9650 2.1135 1.9334 13 14 9.7481 4.8742 1.8527 14 1 9.4099 5.3406 3.2215 15 1 11.2189 4.9367 1.6578 16 1 9.0790 5.7455 0.8535 17 16 4.5604 1.4420 1.4382 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 1.8933 -0.5139 0.8900 22 1 1.8934 -0.5138 -0.8899 23 1 1.6767 1.9563 -0.8900 24 1 1.6768 1.9562 0.8900 25 1 3.9078 1.4322 -2.0887 26 1 6.4127 1.4408 -1.6333 27 1 7.4528 0.9270 1.9401 28 1 8.0787 0.9269 0.2738 29 1 10.8575 2.2905 2.2694 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535708508.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:33 Heat of formation + Delta-G solvation = -16.450737 kcal Electronic energy + Delta-G solvation = -11151.256394 eV Core-core repulsion = 9164.168614 eV Total energy + Delta-G solvation = -1987.087779 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 210.077 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.98143 -36.20575 -35.06425 -32.36340 -29.64358 -26.84873 -24.72468 -23.37993 -22.22256 -19.54927 -18.57835 -17.69394 -16.63291 -15.94497 -15.69915 -14.75036 -14.54233 -14.33420 -14.04772 -13.69520 -13.17365 -13.12798 -12.81191 -12.53863 -12.34808 -12.10061 -12.02280 -11.84798 -11.56614 -11.50236 -11.37307 -10.64608 -9.29610 -9.17508 -8.24250 -6.39253 0.27141 0.84499 1.27851 1.38031 1.39369 1.50990 1.98485 2.38711 3.06080 3.88923 4.14683 4.24681 4.33877 4.54184 4.67072 4.79391 4.85996 4.94993 5.03423 5.10187 5.22809 5.26671 5.30267 5.45564 5.50405 5.62762 5.69742 5.83558 6.08710 6.71266 7.29581 8.84458 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.069128 B = 0.006407 C = 0.006350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.948997 B = 4368.832464 C = 4408.460973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C -0.040 4.040 4 C -0.188 4.188 5 C -0.134 4.134 6 C -0.171 4.171 7 C -0.149 4.149 8 C 0.087 3.913 9 C -0.532 4.532 10 H 0.054 0.946 11 C 0.006 3.994 12 N -0.929 5.929 13 Si 0.968 3.032 14 H -0.271 1.271 15 H -0.277 1.277 16 H -0.266 1.266 17 S 0.059 5.941 18 H 0.064 0.936 19 H 0.057 0.943 20 H 0.061 0.939 21 H 0.051 0.949 22 H 0.063 0.937 23 H 0.097 0.903 24 H 0.074 0.926 25 H 0.161 0.839 26 H 0.132 0.868 27 H 0.003 0.997 28 H 0.015 0.985 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.182 -1.644 -4.490 16.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.079 4.079 4 C -0.305 4.305 5 C -0.163 4.163 6 C -0.200 4.200 7 C -0.266 4.266 8 C 0.048 3.952 9 C -0.570 4.570 10 H 0.073 0.927 11 C -0.193 4.193 12 N -0.569 5.569 13 Si 0.792 3.208 14 H -0.196 1.196 15 H -0.202 1.202 16 H -0.190 1.190 17 S 0.322 5.678 18 H 0.083 0.917 19 H 0.076 0.924 20 H 0.080 0.920 21 H 0.070 0.930 22 H 0.082 0.918 23 H 0.115 0.885 24 H 0.093 0.907 25 H 0.179 0.821 26 H 0.150 0.850 27 H 0.021 0.979 28 H 0.033 0.967 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.290 -1.692 -2.885 16.630 hybrid contribution 1.348 0.603 -1.154 1.874 sum -14.942 -1.089 -4.039 15.517 Atomic orbital electron populations 1.21751 0.93933 1.02329 1.02441 1.21532 0.96902 0.95142 1.02042 1.20227 0.85373 0.98451 1.03865 1.24752 1.00384 1.10875 0.94446 1.20171 0.91697 1.04275 1.00196 1.20217 0.97212 1.07046 0.95513 1.24939 0.99353 1.05392 0.96953 1.17619 0.86044 0.96812 0.94699 1.21358 0.99411 0.92099 1.44161 0.92735 1.25944 0.96592 1.02095 0.94643 1.70068 1.08698 1.33157 1.44929 0.85396 0.77528 0.78935 0.78926 1.19586 1.20183 1.18988 1.83990 0.97241 1.74769 1.11798 0.91688 0.92407 0.92009 0.93029 0.91787 0.88482 0.90711 0.82137 0.85041 0.97861 0.96676 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 71.98 0.71 -1.45 15 2 C -0.12 -2.33 5.92 30.59 0.18 -2.15 15 3 C -0.04 -0.89 5.71 29.84 0.17 -0.72 15 4 C -0.19 -5.85 5.76 24.59 0.14 -5.71 15 5 C -0.13 -4.33 10.05 21.22 0.21 -4.12 15 6 C -0.17 -6.89 10.05 21.22 0.21 -6.68 15 7 C -0.15 -6.90 5.70 24.59 0.14 -6.76 15 8 C 0.09 4.82 5.47 29.10 0.16 4.98 15 9 C -0.53 -31.13 9.09 25.60 0.23 -30.89 15 10 H 0.05 3.16 7.74 -2.91 -0.02 3.14 15 11 C 0.01 0.34 5.46 84.65 0.46 0.80 15 12 N -0.93 -56.47 13.29 21.45 0.28 -56.18 15 13 Si 0.97 44.76 29.54 68.60 2.03 46.78 15 14 H -0.27 -12.08 7.11 99.48 0.71 -11.37 15 15 H -0.28 -12.32 7.11 99.48 0.71 -11.62 15 16 H -0.27 -11.87 7.11 99.48 0.71 -11.17 15 17 S 0.06 2.27 23.31 -56.49 -1.32 0.96 15 18 H 0.06 0.82 8.14 -2.39 -0.02 0.80 15 19 H 0.06 0.81 8.14 -2.39 -0.02 0.79 15 20 H 0.06 0.82 8.14 -2.38 -0.02 0.80 15 21 H 0.05 1.14 8.14 -2.39 -0.02 1.12 15 22 H 0.06 1.27 8.14 -2.39 -0.02 1.25 15 23 H 0.10 1.79 8.14 -2.39 -0.02 1.77 15 24 H 0.07 1.60 8.14 -2.39 -0.02 1.58 15 25 H 0.16 4.05 8.06 -2.91 -0.02 4.02 15 26 H 0.13 5.16 8.06 -2.91 -0.02 5.14 15 27 H 0.00 0.18 8.14 -2.39 -0.02 0.17 15 28 H 0.02 0.88 8.14 -2.39 -0.02 0.86 15 29 H 0.27 15.17 8.31 -92.71 -0.77 14.40 15 Total: -1.00 -64.18 266.02 4.73 -59.45 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: 1.11 Total: 1.70 kcal Atomic # 6 Polarization: -55.33 SS G_CDS: 2.63 Total: -52.71 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 0.28 Total: -56.18 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -1.32 Total: 0.96 kcal Total: -64.18 4.73 -59.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535708508.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.003 kcal (2) G-P(sol) polarization free energy of solvation -64.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds