Wall clock time and date at job start Mon Mar 30 2020 02:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34520 * 125.78594 * 2 1 4 4 C 1.41376 * 106.84008 * 179.74976 * 3 2 1 5 5 C 1.34522 * 106.84209 * 0.37496 * 4 3 2 6 6 C 1.50697 * 125.79086 * 179.88525 * 5 4 3 7 7 H 1.08998 * 109.46839 * 359.71938 * 6 5 4 8 8 C 1.52996 * 109.47293 * 239.71697 * 6 5 4 9 9 C 1.52997 * 109.46852 * 119.71569 * 6 5 4 10 10 H 1.09001 * 109.47375 * 305.00300 * 9 6 5 11 11 O 1.42895 * 109.47356 * 65.00202 * 9 6 5 12 12 C 1.50706 * 109.47103 * 185.00364 * 9 6 5 13 13 H 1.07998 * 119.99629 * 359.97438 * 12 9 6 14 14 C 1.37875 * 119.99955 * 180.02562 * 12 9 6 15 15 N 1.31514 * 120.00140 * 179.97438 * 14 12 9 16 16 Si 1.86803 * 120.00134 * 359.97438 * 14 12 9 17 17 H 1.48493 * 109.47035 * 90.00481 * 16 14 12 18 18 H 1.48500 * 109.47034 * 210.00652 * 16 14 12 19 19 H 1.48497 * 109.46869 * 330.00190 * 16 14 12 20 20 O 1.34294 * 125.79462 * 179.97438 * 2 1 3 21 21 H 1.09008 * 109.46841 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46868 * 299.99520 * 1 2 3 23 23 H 1.08996 * 109.47410 * 60.00024 * 1 2 3 24 24 H 1.08000 * 126.57664 * 0.02562 * 3 2 1 25 25 H 1.08002 * 126.58088 * 180.23405 * 4 3 2 26 26 H 1.09004 * 109.47120 * 60.00053 * 8 6 5 27 27 H 1.09001 * 109.46931 * 180.02562 * 8 6 5 28 28 H 1.08998 * 109.47375 * 299.99913 * 8 6 5 29 29 H 0.96705 * 114.00010 * 59.99704 * 11 9 6 30 30 H 0.96998 * 120.00084 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0912 0.0000 4 6 3.6308 0.6322 0.0059 5 6 3.5815 -0.7121 0.0007 6 6 4.7707 -1.6376 0.0017 7 1 5.6886 -1.0498 0.0022 8 6 4.7310 -2.5203 -1.2474 9 6 4.7293 -2.5198 1.2511 10 1 4.6680 -1.8900 2.1386 11 8 3.5854 -3.3742 1.1933 12 6 5.9799 -3.3583 1.3156 13 1 6.7290 -3.2710 0.5425 14 6 6.1672 -4.2375 2.3610 15 7 7.2582 -4.9697 2.4170 16 14 4.8711 -4.3889 3.6977 17 1 3.8894 -5.4367 3.3189 18 1 5.5228 -4.7612 4.9791 19 1 4.1711 -3.0892 3.8578 20 8 2.2925 -1.0893 0.0005 21 1 -0.3633 -1.0278 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.9664 2.1205 0.0004 25 1 4.5211 1.2436 0.0110 26 1 4.7604 -1.8918 -2.1375 27 1 5.5910 -3.1901 -1.2464 28 1 3.8131 -3.1082 -1.2479 29 1 3.5733 -3.9640 0.4270 30 1 7.3901 -5.5880 3.1527 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216267512.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:57 Heat of formation + Delta-G solvation = -49.106987 kcal Electronic energy + Delta-G solvation = -14096.852430 eV Core-core repulsion = 11665.595698 eV Total energy + Delta-G solvation = -2431.256732 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.12219 -36.98634 -32.90353 -32.71280 -32.27324 -30.65435 -27.17547 -26.11501 -23.31742 -21.29753 -20.47489 -19.20447 -17.52116 -15.81987 -15.64951 -14.96529 -14.77375 -13.95923 -13.84883 -13.03506 -12.97085 -12.81152 -12.75660 -12.33957 -11.86093 -11.71722 -11.40884 -11.02159 -10.84187 -10.63968 -10.50642 -9.78276 -9.46361 -9.19280 -8.66565 -8.54059 -7.72076 -6.14828 -4.26717 2.19214 3.02448 3.39878 3.45474 3.48649 3.62990 4.49977 5.00913 5.14748 5.26075 5.41298 5.47022 5.52610 5.74098 5.76725 5.83053 5.90666 6.06899 6.21945 6.29375 6.53809 6.59582 6.69084 6.84203 6.96526 7.28192 7.54612 7.71328 8.25659 8.78987 8.99502 9.48790 10.95051 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.043133 B = 0.009743 C = 0.008830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.006151 B = 2873.025835 C = 3170.176176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.039 4.039 3 C -0.214 4.214 4 C -0.237 4.237 5 C 0.030 3.970 6 C -0.035 4.035 7 H 0.099 0.901 8 C -0.139 4.139 9 C 0.198 3.802 10 H 0.061 0.939 11 O -0.580 6.580 12 C -0.560 4.560 13 H 0.078 0.922 14 C 0.083 3.917 15 N -0.892 5.892 16 Si 0.912 3.088 17 H -0.278 1.278 18 H -0.306 1.306 19 H -0.269 1.269 20 O -0.155 6.155 21 H 0.073 0.927 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.139 0.861 25 H 0.142 0.858 26 H 0.043 0.957 27 H 0.078 0.922 28 H 0.054 0.946 29 H 0.360 0.640 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.963 8.663 -5.492 14.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.089 4.089 3 C -0.233 4.233 4 C -0.256 4.256 5 C -0.021 4.021 6 C -0.054 4.054 7 H 0.118 0.882 8 C -0.197 4.197 9 C 0.140 3.860 10 H 0.079 0.921 11 O -0.386 6.386 12 C -0.597 4.597 13 H 0.096 0.904 14 C -0.122 4.122 15 N -0.529 5.529 16 Si 0.742 3.258 17 H -0.204 1.204 18 H -0.234 1.234 19 H -0.193 1.193 20 O -0.051 6.051 21 H 0.092 0.908 22 H 0.097 0.903 23 H 0.096 0.904 24 H 0.157 0.843 25 H 0.160 0.840 26 H 0.062 0.938 27 H 0.097 0.903 28 H 0.073 0.927 29 H 0.207 0.793 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.122 8.553 -4.853 14.112 hybrid contribution -0.230 -0.070 0.259 0.354 sum -10.352 8.483 -4.593 14.150 Atomic orbital electron populations 1.20190 0.85890 1.03643 1.02731 1.22326 0.93916 0.84799 1.07860 1.21408 0.92984 0.98799 1.10087 1.21505 0.97803 0.94088 1.12219 1.22874 0.83240 0.94329 1.01666 1.20602 0.90276 0.95212 0.99309 0.88245 1.21736 1.03069 0.99529 0.95319 1.19954 0.85390 0.88749 0.91895 0.92092 1.86405 1.47454 1.54803 1.49981 1.21506 1.04125 1.23124 1.10927 0.90375 1.25002 0.95123 0.94279 0.97777 1.69949 1.26218 1.24510 1.32194 0.86265 0.80831 0.79450 0.79268 1.20407 1.23374 1.19343 1.84052 1.16364 1.34149 1.70504 0.90812 0.90307 0.90374 0.84323 0.84046 0.93825 0.90325 0.92721 0.79277 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.42 36.01 0.38 -0.40 16 2 C -0.04 -0.63 7.32 -35.62 -0.26 -0.89 16 3 C -0.21 -3.36 10.81 -39.70 -0.43 -3.79 16 4 C -0.24 -4.12 10.78 -39.70 -0.43 -4.55 16 5 C 0.03 0.58 5.73 -35.62 -0.20 0.37 16 6 C -0.04 -0.70 2.58 -91.78 -0.24 -0.94 16 7 H 0.10 1.90 8.10 -51.93 -0.42 1.48 16 8 C -0.14 -2.49 8.56 37.16 0.32 -2.17 16 9 C 0.20 4.69 2.05 -27.88 -0.06 4.63 16 10 H 0.06 1.56 7.20 -51.93 -0.37 1.18 16 11 O -0.58 -13.64 10.26 -39.10 -0.40 -14.05 16 12 C -0.56 -15.18 8.64 -34.44 -0.30 -15.48 16 13 H 0.08 2.23 7.30 -52.49 -0.38 1.84 16 14 C 0.08 2.37 5.47 -17.82 -0.10 2.27 16 15 N -0.89 -26.84 13.96 55.43 0.77 -26.06 16 16 Si 0.91 23.50 26.18 -169.99 -4.45 19.05 16 17 H -0.28 -7.17 7.11 56.52 0.40 -6.76 16 18 H -0.31 -7.80 7.11 56.52 0.40 -7.39 16 19 H -0.27 -6.98 6.54 56.52 0.37 -6.61 16 20 O -0.16 -3.01 10.13 1.87 0.02 -2.99 16 21 H 0.07 0.82 8.14 -51.92 -0.42 0.39 16 22 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.14 1.77 8.06 -52.49 -0.42 1.34 16 25 H 0.14 2.17 8.06 -52.49 -0.42 1.75 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.08 1.48 6.95 -51.93 -0.36 1.12 16 28 H 0.05 0.95 6.72 -51.93 -0.35 0.60 16 29 H 0.36 7.58 7.19 45.56 0.33 7.91 16 30 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 254.07 15.07 3.83 3.83 Total: -1.00 -31.39 254.07 -4.81 -36.20 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -3.26 Total: 4.95 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: -1.32 Total: -20.93 kcal Atomic # 7 Polarization: -26.84 SS G_CDS: 0.77 Total: -26.06 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.38 Total: -17.03 kcal Atomic # 14 Polarization: 23.50 SS G_CDS: -4.45 Total: 19.05 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -31.39 -4.81 -36.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216267512.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.911 kcal (2) G-P(sol) polarization free energy of solvation -31.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds