Wall clock time and date at job start Mon Mar 30 2020 02:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34833 * 125.95558 * 2 1 4 4 C 1.50701 * 125.77333 * 359.97438 * 3 2 1 5 5 H 1.09004 * 109.47248 * 0.02562 * 4 3 2 6 6 C 1.52999 * 109.47137 * 239.99921 * 4 3 2 7 7 C 1.50708 * 109.46845 * 119.99788 * 4 3 2 8 8 H 1.07999 * 119.99598 * 5.37793 * 7 4 3 9 9 C 1.37878 * 119.99751 * 185.37279 * 7 4 3 10 10 N 1.31515 * 119.99732 * 185.16737 * 9 7 4 11 11 Si 1.86793 * 120.00140 * 5.16753 * 9 7 4 12 12 H 1.48502 * 109.47614 * 269.99984 * 11 9 7 13 13 H 1.48506 * 109.47291 * 149.99928 * 11 9 7 14 14 H 1.48505 * 109.47404 * 30.00348 * 11 9 7 15 15 N 1.36598 * 108.44923 * 180.24388 * 3 2 1 16 16 H 0.97002 * 125.90861 * 179.69666 * 15 3 2 17 17 N 1.40118 * 108.18235 * 359.58074 * 15 3 2 18 18 C 1.46504 * 126.16706 * 180.16403 * 17 15 3 19 19 C 1.34879 * 107.66905 * 0.41898 * 17 15 3 20 20 O 1.21778 * 126.19298 * 179.74270 * 19 17 15 21 21 H 1.09000 * 109.47460 * 90.00021 * 1 2 3 22 22 H 1.08997 * 109.46782 * 209.99595 * 1 2 3 23 23 H 1.08999 * 109.47321 * 329.99647 * 1 2 3 24 24 H 1.09002 * 109.46645 * 294.96868 * 6 4 3 25 25 H 1.08995 * 109.46816 * 54.97168 * 6 4 3 26 26 H 1.08996 * 109.46887 * 174.97101 * 6 4 3 27 27 H 0.97004 * 119.99962 * 355.00288 * 10 9 7 28 28 H 1.09006 * 109.46747 * 180.27789 * 18 17 15 29 29 H 1.09000 * 109.46911 * 300.27571 * 18 17 15 30 30 H 1.08996 * 109.47051 * 60.27945 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2987 1.0914 0.0000 4 6 1.8262 2.5225 -0.0005 5 1 0.7364 2.5453 -0.0005 6 6 2.3517 3.2326 -1.2498 7 6 2.3429 3.2225 1.2300 8 1 3.0226 2.7121 1.8962 9 6 1.9479 4.5145 1.5052 10 7 2.4758 5.1612 2.5214 11 14 0.6629 5.3463 0.4346 12 1 1.3342 6.0542 -0.6850 13 1 -0.1032 6.3233 1.2495 14 1 -0.2641 4.3228 -0.1118 15 7 3.6014 0.6805 -0.0055 16 1 4.3803 1.2587 -0.0109 17 7 3.6180 -0.7205 0.0007 18 6 4.8108 -1.5711 0.0011 19 6 2.3377 -1.1451 0.0004 20 8 1.9645 -2.3043 0.0005 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3634 0.8899 0.5139 24 1 3.4394 3.2885 -1.2054 25 1 2.0523 2.6753 -2.1374 26 1 1.9377 4.2398 -1.2963 27 1 3.0884 4.7063 3.1203 28 1 4.5100 -2.6188 0.0016 29 1 5.4049 -1.3641 -0.8890 30 1 5.4049 -1.3632 0.8910 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260657980.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:09 Heat of formation + Delta-G solvation = 26.092236 kcal Electronic energy + Delta-G solvation = -14113.474511 eV Core-core repulsion = 11717.771413 eV Total energy + Delta-G solvation = -2395.703097 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.02798 -36.69746 -34.95047 -32.92249 -31.08568 -30.52998 -27.24079 -25.53868 -24.78850 -21.99889 -19.87668 -19.05581 -17.69051 -17.05049 -15.63629 -15.32705 -14.43481 -14.30026 -13.56894 -13.19958 -12.87440 -12.63652 -12.44996 -12.10026 -12.01554 -11.71884 -11.60038 -11.20540 -11.10681 -10.67568 -10.11420 -9.88254 -9.18016 -8.98181 -8.63627 -8.45816 -7.15897 -6.61886 -4.32830 2.16484 2.36066 3.26280 3.34717 3.48315 3.84392 4.29615 4.33053 5.11375 5.16136 5.28812 5.42043 5.56248 5.81802 6.02292 6.20218 6.24005 6.34137 6.41169 6.48588 6.60088 6.74831 6.78903 6.93132 7.13536 7.67643 7.80322 8.08643 8.15891 8.64404 8.82125 9.38701 10.76883 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.041977 B = 0.009979 C = 0.009092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.874215 B = 2805.213778 C = 3078.932676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 C -0.359 4.359 3 C 0.256 3.744 4 C 0.053 3.947 5 H 0.066 0.934 6 C -0.147 4.147 7 C -0.598 4.598 8 H 0.059 0.941 9 C 0.034 3.966 10 N -0.903 5.903 11 Si 1.053 2.947 12 H -0.282 1.282 13 H -0.288 1.288 14 H -0.274 1.274 15 N -0.492 5.492 16 H 0.439 0.561 17 N -0.434 5.434 18 C 0.104 3.896 19 C 0.539 3.461 20 O -0.575 6.575 21 H 0.047 0.953 22 H 0.054 0.946 23 H 0.062 0.938 24 H 0.049 0.951 25 H 0.035 0.965 26 H 0.053 0.947 27 H 0.269 0.731 28 H 0.100 0.900 29 H 0.063 0.937 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.404 -5.478 -6.652 8.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.371 4.371 3 C 0.138 3.862 4 C 0.032 3.968 5 H 0.084 0.916 6 C -0.205 4.205 7 C -0.636 4.636 8 H 0.077 0.923 9 C -0.172 4.172 10 N -0.537 5.537 11 Si 0.882 3.118 12 H -0.209 1.209 13 H -0.214 1.214 14 H -0.200 1.200 15 N -0.212 5.212 16 H 0.284 0.716 17 N -0.257 5.257 18 C -0.037 4.037 19 C 0.339 3.661 20 O -0.457 6.457 21 H 0.066 0.934 22 H 0.073 0.927 23 H 0.081 0.919 24 H 0.068 0.932 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.119 0.881 29 H 0.082 0.918 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.695 -4.857 -6.872 8.584 hybrid contribution 1.622 -1.128 0.412 2.019 sum 3.317 -5.986 -6.460 9.411 Atomic orbital electron populations 1.19750 0.88931 1.01552 1.00431 1.20044 0.97240 0.91519 1.28331 1.21380 0.81135 0.97241 0.86477 1.18434 0.98109 0.84003 0.96219 0.91614 1.22133 1.01126 1.00159 0.97074 1.21893 1.32231 1.01212 1.08234 0.92267 1.25804 0.98575 0.94331 0.98442 1.70826 1.29248 1.38255 1.15327 0.83873 0.76395 0.76264 0.75286 1.20883 1.21413 1.19980 1.43948 1.08211 0.94267 1.74812 0.71571 1.48137 1.08595 0.94857 1.74093 1.21710 0.85479 0.94816 1.01696 1.16885 0.80483 0.89775 0.78974 1.90754 1.76548 1.20388 1.58044 0.93395 0.92654 0.91926 0.93155 0.94551 0.92789 0.92100 0.88143 0.91823 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.91 9.96 36.01 0.36 -0.55 16 2 C -0.36 -7.52 6.13 -104.60 -0.64 -8.16 16 3 C 0.26 5.20 5.65 -81.68 -0.46 4.74 16 4 C 0.05 1.13 2.22 -92.92 -0.21 0.93 16 5 H 0.07 1.43 5.23 -51.93 -0.27 1.15 16 6 C -0.15 -2.78 8.76 37.16 0.33 -2.45 16 7 C -0.60 -15.10 8.90 -34.44 -0.31 -15.41 16 8 H 0.06 1.63 7.97 -52.49 -0.42 1.21 16 9 C 0.03 0.90 5.43 -17.82 -0.10 0.81 16 10 N -0.90 -25.98 13.70 55.43 0.76 -25.22 16 11 Si 1.05 23.28 25.29 -169.99 -4.30 18.98 16 12 H -0.28 -5.88 6.81 56.52 0.38 -5.49 16 13 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 14 H -0.27 -5.54 6.36 56.52 0.36 -5.19 16 15 N -0.49 -8.77 7.29 33.67 0.25 -8.52 16 16 H 0.44 6.79 8.96 -182.58 -1.64 5.16 16 17 N -0.43 -7.73 4.02 -70.06 -0.28 -8.01 16 18 C 0.10 1.32 11.53 59.85 0.69 2.01 16 19 C 0.54 11.50 7.91 -14.98 -0.12 11.38 16 20 O -0.58 -13.54 17.61 5.12 0.09 -13.45 16 21 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 22 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.06 1.14 7.09 -51.93 -0.37 0.77 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 1.03 4.40 -51.93 -0.23 0.81 16 27 H 0.27 7.73 8.72 -40.82 -0.36 7.37 16 28 H 0.10 1.27 7.76 -51.93 -0.40 0.86 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 253.65 15.07 3.82 3.82 Total: -1.00 -31.23 253.65 -5.19 -36.42 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -5.07 Total: 2.69 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -0.46 Total: -6.71 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 0.72 Total: -41.75 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.09 Total: -13.45 kcal Atomic # 14 Polarization: 23.28 SS G_CDS: -4.30 Total: 18.98 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -31.23 -5.19 -36.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260657980.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.514 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds