Wall clock time and date at job start Mon Mar 30 2020 02:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34833 * 125.95558 * 2 1 4 4 C 1.50701 * 125.77333 * 359.97438 * 3 2 1 5 5 H 1.09004 * 109.47248 * 0.02562 * 4 3 2 6 6 C 1.52999 * 109.47137 * 239.99921 * 4 3 2 7 7 C 1.50708 * 109.46845 * 119.99788 * 4 3 2 8 8 H 1.07999 * 119.99598 * 5.37793 * 7 4 3 9 9 C 1.37878 * 119.99751 * 185.37279 * 7 4 3 10 10 N 1.31515 * 119.99732 * 185.16737 * 9 7 4 11 11 Si 1.86793 * 120.00140 * 5.16753 * 9 7 4 12 12 H 1.48502 * 109.47614 * 269.99984 * 11 9 7 13 13 H 1.48506 * 109.47291 * 149.99928 * 11 9 7 14 14 H 1.48505 * 109.47404 * 30.00348 * 11 9 7 15 15 N 1.36598 * 108.44923 * 180.24388 * 3 2 1 16 16 H 0.97002 * 125.90861 * 179.69666 * 15 3 2 17 17 N 1.40118 * 108.18235 * 359.58074 * 15 3 2 18 18 C 1.46504 * 126.16706 * 180.16403 * 17 15 3 19 19 C 1.34879 * 107.66905 * 0.41898 * 17 15 3 20 20 O 1.21778 * 126.19298 * 179.74270 * 19 17 15 21 21 H 1.09000 * 109.47460 * 90.00021 * 1 2 3 22 22 H 1.08997 * 109.46782 * 209.99595 * 1 2 3 23 23 H 1.08999 * 109.47321 * 329.99647 * 1 2 3 24 24 H 1.09002 * 109.46645 * 294.96868 * 6 4 3 25 25 H 1.08995 * 109.46816 * 54.97168 * 6 4 3 26 26 H 1.08996 * 109.46887 * 174.97101 * 6 4 3 27 27 H 0.97004 * 119.99962 * 355.00288 * 10 9 7 28 28 H 1.09006 * 109.46747 * 180.27789 * 18 17 15 29 29 H 1.09000 * 109.46911 * 300.27571 * 18 17 15 30 30 H 1.08996 * 109.47051 * 60.27945 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2987 1.0914 0.0000 4 6 1.8262 2.5225 -0.0005 5 1 0.7364 2.5453 -0.0005 6 6 2.3517 3.2326 -1.2498 7 6 2.3429 3.2225 1.2300 8 1 3.0226 2.7121 1.8962 9 6 1.9479 4.5145 1.5052 10 7 2.4758 5.1612 2.5214 11 14 0.6629 5.3463 0.4346 12 1 1.3342 6.0542 -0.6850 13 1 -0.1032 6.3233 1.2495 14 1 -0.2641 4.3228 -0.1118 15 7 3.6014 0.6805 -0.0055 16 1 4.3803 1.2587 -0.0109 17 7 3.6180 -0.7205 0.0007 18 6 4.8108 -1.5711 0.0011 19 6 2.3377 -1.1451 0.0004 20 8 1.9645 -2.3043 0.0005 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3634 0.8899 0.5139 24 1 3.4394 3.2885 -1.2054 25 1 2.0523 2.6753 -2.1374 26 1 1.9377 4.2398 -1.2963 27 1 3.0884 4.7063 3.1203 28 1 4.5100 -2.6188 0.0016 29 1 5.4049 -1.3641 -0.8890 30 1 5.4049 -1.3632 0.8910 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260657980.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:08 Heat of formation + Delta-G solvation = 3.938489 kcal Electronic energy + Delta-G solvation = -14114.435169 eV Core-core repulsion = 11717.771413 eV Total energy + Delta-G solvation = -2396.663756 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.56019 -38.34209 -36.60364 -34.62082 -32.82106 -31.96872 -28.64119 -27.02583 -26.56109 -23.61531 -21.46598 -20.66455 -19.59461 -18.52628 -17.09372 -16.88176 -16.08976 -15.92922 -15.25213 -14.55129 -14.40784 -14.18021 -13.89374 -13.61662 -13.39168 -13.27811 -13.16398 -12.79066 -12.69586 -12.32492 -11.73979 -11.55498 -10.88750 -10.83245 -10.59140 -9.93920 -8.76493 -8.65823 -6.41722 0.72401 0.82620 1.52361 1.62578 1.76921 2.23288 2.52449 2.91149 3.13113 3.81288 4.08054 4.35493 4.37326 4.46753 4.59571 4.65155 4.77869 4.86169 4.93605 4.99835 5.12627 5.20967 5.26848 5.43682 5.56227 5.83140 6.02278 6.24926 6.52358 6.64168 7.25867 7.38181 8.67402 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.041977 B = 0.009979 C = 0.009092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.874215 B = 2805.213778 C = 3078.932676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C -0.376 4.376 3 C 0.246 3.754 4 C 0.055 3.945 5 H 0.069 0.931 6 C -0.145 4.145 7 C -0.588 4.588 8 H 0.025 0.975 9 C -0.015 4.015 10 N -0.941 5.941 11 Si 1.083 2.917 12 H -0.258 1.258 13 H -0.299 1.299 14 H -0.241 1.241 15 N -0.479 5.479 16 H 0.450 0.550 17 N -0.426 5.426 18 C 0.095 3.905 19 C 0.520 3.480 20 O -0.608 6.608 21 H 0.066 0.934 22 H 0.050 0.950 23 H 0.064 0.936 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.252 0.748 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.450 -5.560 -8.559 10.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.388 4.388 3 C 0.126 3.874 4 C 0.034 3.966 5 H 0.087 0.913 6 C -0.202 4.202 7 C -0.626 4.626 8 H 0.043 0.957 9 C -0.213 4.213 10 N -0.577 5.577 11 Si 0.905 3.095 12 H -0.183 1.183 13 H -0.227 1.227 14 H -0.165 1.165 15 N -0.200 5.200 16 H 0.298 0.702 17 N -0.248 5.248 18 C -0.045 4.045 19 C 0.320 3.680 20 O -0.494 6.494 21 H 0.085 0.915 22 H 0.069 0.931 23 H 0.083 0.917 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.119 0.881 29 H 0.114 0.886 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.813 -4.954 -8.797 10.257 hybrid contribution 1.712 -1.185 1.052 2.333 sum 3.525 -6.139 -7.745 10.493 Atomic orbital electron populations 1.19802 0.87892 1.01420 1.01623 1.20421 0.98481 0.91649 1.28249 1.21205 0.82094 0.96690 0.87428 1.18344 0.98253 0.84429 0.95554 0.91311 1.22055 1.01475 1.00111 0.96566 1.22010 1.30671 1.01001 1.08891 0.95698 1.27125 0.99786 0.95620 0.98786 1.70961 1.30938 1.38877 1.16959 0.83560 0.74932 0.76354 0.74633 1.18326 1.22686 1.16513 1.43964 1.08036 0.94627 1.73391 0.70236 1.48308 1.09247 0.94866 1.72355 1.22125 0.84101 0.93919 1.04311 1.17015 0.81760 0.89483 0.79738 1.90723 1.77424 1.21312 1.59929 0.91526 0.93070 0.91725 0.92626 0.91752 0.92755 0.93839 0.88129 0.88611 0.89722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.77 9.96 71.24 0.71 -1.06 16 2 C -0.38 -15.20 6.13 -19.85 -0.12 -15.32 16 3 C 0.25 9.55 5.65 41.03 0.23 9.78 16 4 C 0.05 2.22 2.22 -12.28 -0.03 2.20 16 5 H 0.07 2.78 5.23 -2.38 -0.01 2.77 16 6 C -0.14 -4.95 8.76 71.98 0.63 -4.32 16 7 C -0.59 -29.44 8.90 25.60 0.23 -29.21 16 8 H 0.02 1.38 7.97 -2.91 -0.02 1.36 16 9 C -0.02 -0.79 5.43 84.65 0.46 -0.33 16 10 N -0.94 -55.14 13.70 21.45 0.29 -54.85 16 11 Si 1.08 44.94 25.29 68.60 1.73 46.67 16 12 H -0.26 -9.69 6.81 99.48 0.68 -9.01 16 13 H -0.30 -12.99 7.11 99.48 0.71 -12.28 16 14 H -0.24 -8.68 6.36 99.48 0.63 -8.05 16 15 N -0.48 -16.12 7.29 -47.38 -0.35 -16.47 16 16 H 0.45 12.94 8.96 -213.31 -1.91 11.03 16 17 N -0.43 -14.35 4.02 -493.69 -1.98 -16.33 16 18 C 0.09 2.14 11.53 127.77 1.47 3.61 16 19 C 0.52 21.63 7.91 85.02 0.67 22.30 16 20 O -0.61 -28.39 17.61 -4.60 -0.08 -28.47 16 21 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 22 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.06 2.24 7.09 -2.39 -0.02 2.22 16 24 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.05 1.87 4.40 -2.39 -0.01 1.86 16 27 H 0.25 15.07 8.72 -92.71 -0.81 14.26 16 28 H 0.10 2.34 7.76 -2.38 -0.02 2.32 16 29 H 0.10 1.59 8.14 -2.39 -0.02 1.58 16 30 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -67.62 253.65 2.97 -64.64 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -0.90 Total: 17.16 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: 4.26 Total: -12.36 kcal Atomic # 7 Polarization: -85.62 SS G_CDS: -2.04 Total: -87.65 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -0.08 Total: -28.47 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.73 Total: 46.67 kcal Total: -67.62 2.97 -64.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260657980.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.583 kcal (2) G-P(sol) polarization free energy of solvation -67.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds