Wall clock time and date at job start Mon Mar 30 2020 02:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34095 * 126.35491 * 2 1 4 4 N 1.34725 * 107.78960 * 179.74763 * 3 2 1 5 5 C 1.31052 * 108.60758 * 0.22948 * 4 3 2 6 6 N 1.38162 * 125.71408 * 180.02562 * 5 4 3 7 7 C 1.46499 * 119.99793 * 179.97438 * 6 5 4 8 8 C 1.46492 * 119.99909 * 359.97438 * 6 5 4 9 9 H 1.08996 * 109.47343 * 0.02562 * 8 6 5 10 10 C 1.53001 * 109.47327 * 239.99769 * 8 6 5 11 11 C 1.50706 * 109.46956 * 119.99723 * 8 6 5 12 12 H 1.07998 * 120.00246 * 0.02562 * 11 8 6 13 13 C 1.37883 * 120.00032 * 179.97438 * 11 8 6 14 14 N 1.31509 * 119.99779 * 0.02562 * 13 11 8 15 15 Si 1.86797 * 119.99831 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.47445 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47132 * 120.00355 * 15 13 11 18 18 H 1.48504 * 109.47089 * 240.00243 * 15 13 11 19 19 O 1.34218 * 108.57484 * 0.02562 * 5 4 3 20 20 H 1.09000 * 109.47245 * 90.02148 * 1 2 3 21 21 H 1.09000 * 109.46969 * 210.02244 * 1 2 3 22 22 H 1.08999 * 109.47245 * 330.01586 * 1 2 3 23 23 H 1.08002 * 126.10898 * 0.02562 * 3 2 1 24 24 H 1.08994 * 109.47231 * 89.99990 * 7 6 5 25 25 H 1.09003 * 109.46786 * 210.00032 * 7 6 5 26 26 H 1.09004 * 109.47145 * 329.99678 * 7 6 5 27 27 H 1.08996 * 109.47183 * 300.00434 * 10 8 6 28 28 H 1.09001 * 109.46709 * 60.00281 * 10 8 6 29 29 H 1.09004 * 109.47065 * 180.02562 * 10 8 6 30 30 H 0.97004 * 119.99870 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3019 1.0800 0.0000 4 7 3.5790 0.6510 0.0057 5 6 3.5800 -0.6595 0.0041 6 7 4.7024 -1.4652 0.0091 7 6 4.5575 -2.9230 0.0071 8 6 6.0372 -0.8617 0.0162 9 1 5.9449 0.2244 0.0171 10 6 6.8053 -1.3077 -1.2295 11 6 6.7814 -1.3030 1.2502 12 1 6.3076 -1.9670 1.9580 13 6 8.0676 -0.8599 1.4750 14 7 8.6447 -0.0518 0.6128 15 14 8.9902 -1.4076 3.0041 16 1 8.1261 -2.3097 3.8071 17 1 10.2243 -2.1307 2.6051 18 1 9.3538 -0.2181 3.8154 19 8 2.3081 -1.0880 -0.0031 20 1 -0.3634 -0.0004 -1.0277 21 1 -0.3633 -0.8898 0.5142 22 1 -0.3634 0.8901 0.5136 23 1 1.9764 2.1098 0.0004 24 1 4.5268 -3.2837 -1.0209 25 1 5.4047 -3.3729 0.5249 26 1 3.6334 -3.1970 0.5162 27 1 6.8976 -2.3938 -1.2299 28 1 6.2670 -0.9884 -2.1219 29 1 7.7987 -0.8590 -1.2239 30 1 9.5494 0.2602 0.7711 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261138853.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:00 Heat of formation + Delta-G solvation = 32.612063 kcal Electronic energy + Delta-G solvation = -13966.062445 eV Core-core repulsion = 11570.642069 eV Total energy + Delta-G solvation = -2395.420376 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.36357 -36.68040 -33.82674 -32.99614 -31.51002 -29.27526 -26.99080 -25.25239 -24.39617 -22.17171 -20.63972 -19.48794 -16.97597 -16.42175 -15.97297 -15.24010 -14.51162 -14.01143 -13.48715 -13.16788 -12.96845 -12.73109 -12.51293 -11.90243 -11.68333 -11.43256 -11.07814 -10.92492 -10.72462 -10.56613 -10.26836 -10.17969 -9.57684 -9.28951 -8.73405 -8.45669 -6.69611 -6.08427 -4.17847 2.31635 2.87000 3.25587 3.33710 3.37577 3.64310 4.14702 4.37763 5.21609 5.30054 5.42670 5.59396 5.62207 5.70430 5.85218 6.04857 6.22237 6.35119 6.69853 6.72449 6.84646 6.89212 7.02978 7.38823 7.58729 7.79148 7.99640 8.17041 8.37858 8.74293 8.93252 9.48197 10.95404 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.046734 B = 0.008219 C = 0.008116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.994472 B = 3405.762321 C = 3449.188285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C -0.131 4.131 3 C 0.001 3.999 4 N -0.548 5.548 5 C 0.474 3.526 6 N -0.554 5.554 7 C 0.100 3.900 8 C 0.281 3.719 9 H 0.069 0.931 10 C -0.149 4.149 11 C -0.528 4.528 12 H 0.061 0.939 13 C 0.066 3.934 14 N -0.887 5.887 15 Si 0.901 3.099 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.282 1.282 19 O -0.238 6.238 20 H 0.068 0.932 21 H 0.065 0.935 22 H 0.081 0.919 23 H 0.171 0.829 24 H 0.041 0.959 25 H 0.086 0.914 26 H 0.051 0.949 27 H 0.031 0.969 28 H 0.013 0.987 29 H 0.097 0.903 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.635 -2.203 -1.584 10.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.185 4.185 3 C -0.138 4.138 4 N -0.288 5.288 5 C 0.177 3.823 6 N -0.280 5.280 7 C -0.043 4.043 8 C 0.182 3.818 9 H 0.087 0.913 10 C -0.207 4.207 11 C -0.567 4.567 12 H 0.079 0.921 13 C -0.137 4.137 14 N -0.525 5.525 15 Si 0.728 3.272 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.208 1.208 19 O -0.128 6.128 20 H 0.086 0.914 21 H 0.084 0.916 22 H 0.099 0.901 23 H 0.189 0.811 24 H 0.060 0.940 25 H 0.105 0.895 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.032 0.968 29 H 0.115 0.885 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.814 -1.878 -1.613 10.122 hybrid contribution -0.064 -0.707 0.809 1.077 sum -9.878 -2.585 -0.803 10.243 Atomic orbital electron populations 1.19944 0.85199 1.02996 1.02287 1.22573 0.93787 0.84273 1.17885 1.22788 0.88234 0.99370 1.03377 1.70979 1.21331 1.06169 1.30278 1.21968 0.79439 0.86909 0.93995 1.46450 1.01256 1.03692 1.76558 1.21519 1.02264 0.80069 1.00491 1.19075 0.73125 0.95432 0.94138 0.91310 1.22151 1.03265 0.99531 0.95803 1.21399 0.98846 1.30191 1.06294 0.92064 1.24872 0.97173 0.94789 0.96826 1.69885 1.14405 1.32869 1.35339 0.86404 0.79555 0.78505 0.82723 1.19816 1.20872 1.20845 1.84286 1.16735 1.36687 1.75097 0.91372 0.91585 0.90068 0.81147 0.94033 0.89525 0.92985 0.95002 0.96804 0.88458 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.54 10.43 36.00 0.38 -0.16 16 2 C -0.13 -2.26 7.38 -35.77 -0.26 -2.52 16 3 C 0.00 0.02 11.79 -17.74 -0.21 -0.19 16 4 N -0.55 -12.76 10.34 -14.45 -0.15 -12.91 16 5 C 0.47 10.83 8.44 -86.99 -0.73 10.10 16 6 N -0.55 -12.71 2.85 -177.60 -0.51 -13.22 16 7 C 0.10 1.88 9.59 59.85 0.57 2.46 16 8 C 0.28 7.24 2.71 -69.08 -0.19 7.05 16 9 H 0.07 2.00 7.15 -51.93 -0.37 1.63 16 10 C -0.15 -3.59 8.97 37.16 0.33 -3.26 16 11 C -0.53 -14.34 7.99 -34.44 -0.28 -14.62 16 12 H 0.06 1.65 7.33 -52.49 -0.38 1.27 16 13 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 14 N -0.89 -24.88 11.32 55.43 0.63 -24.25 16 15 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 16 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 O -0.24 -4.84 10.23 3.67 0.04 -4.80 16 20 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 23 H 0.17 2.51 8.06 -52.49 -0.42 2.09 16 24 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.09 1.64 7.02 -51.93 -0.36 1.27 16 26 H 0.05 0.89 7.71 -51.93 -0.40 0.49 16 27 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 28 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.10 2.54 6.07 -51.93 -0.32 2.23 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 258.21 15.07 3.89 3.89 Total: -1.00 -30.51 258.21 -5.51 -36.01 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -3.91 Total: -1.26 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -0.48 Total: 0.56 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: -0.03 Total: -50.38 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: 0.04 Total: -4.80 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.51 -5.51 -36.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261138853.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.624 kcal (2) G-P(sol) polarization free energy of solvation -30.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds