Wall clock time and date at job start Mon Mar 30 2020 03:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30175 * 126.79792 * 2 1 4 4 O 1.20925 * 111.60208 * 179.68775 * 3 2 1 5 5 C 1.34039 * 111.56837 * 0.45247 * 4 3 2 6 6 C 1.50698 * 126.78171 * 179.82721 * 5 4 3 7 7 H 1.09001 * 109.47556 * 164.68429 * 6 5 4 8 8 N 1.46905 * 109.46910 * 44.68468 * 6 5 4 9 9 C 1.52998 * 109.47049 * 284.68750 * 6 5 4 10 10 C 1.50698 * 109.47017 * 184.99831 * 9 6 5 11 11 H 1.08005 * 120.00198 * 359.97438 * 10 9 6 12 12 C 1.37882 * 120.00008 * 180.02562 * 10 9 6 13 13 N 1.31521 * 119.99866 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 119.99970 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47435 * 90.00210 * 14 12 10 16 16 H 1.48503 * 109.47271 * 209.99824 * 14 12 10 17 17 H 1.48494 * 109.47271 * 329.99600 * 14 12 10 18 18 C 1.35459 * 106.44359 * 359.56254 * 5 4 3 19 19 C 1.50695 * 128.00573 * 180.23763 * 18 5 4 20 20 H 1.08997 * 109.47498 * 270.03904 * 1 2 3 21 21 H 1.08998 * 109.47132 * 30.04196 * 1 2 3 22 22 H 1.09005 * 109.47237 * 150.04173 * 1 2 3 23 23 H 1.00901 * 110.99869 * 300.00472 * 8 6 5 24 24 H 1.00896 * 110.99543 * 63.95595 * 8 6 5 25 25 H 1.09001 * 109.47115 * 304.99584 * 9 6 5 26 26 H 1.09003 * 109.47470 * 64.99668 * 9 6 5 27 27 H 0.96995 * 119.99589 * 179.97438 * 13 12 10 28 28 H 1.08999 * 109.47293 * 90.00510 * 19 18 5 29 29 H 1.09000 * 109.47196 * 210.00061 * 19 18 5 30 30 H 1.09000 * 109.47480 * 330.00457 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2867 1.0424 0.0000 4 8 3.4537 0.7254 0.0061 5 6 3.6025 -0.6067 0.0013 6 6 4.9022 -1.3694 0.0027 7 1 4.7130 -2.4093 0.2693 8 7 5.8196 -0.7719 0.9822 9 6 5.5319 -1.3065 -1.3903 10 6 6.7670 -2.1694 -1.4226 11 1 7.0725 -2.7085 -0.5380 12 6 7.5076 -2.2700 -2.5813 13 7 7.1359 -1.6132 -3.6584 14 14 9.0388 -3.3390 -2.6212 15 1 8.6697 -4.7174 -3.0321 16 1 10.0103 -2.7763 -3.5932 17 1 9.6540 -3.3733 -1.2701 18 6 2.3539 -1.1320 0.0009 19 6 1.9591 -2.5863 0.0012 20 1 -0.3634 0.0007 1.0276 21 1 -0.3633 0.8896 -0.5145 22 1 -0.3634 -0.8904 -0.5132 23 1 6.0108 0.1929 0.7569 24 1 5.4550 -0.8590 1.9190 25 1 4.8167 -1.6681 -2.1290 26 1 5.8026 -0.2760 -1.6205 27 1 7.6571 -1.6836 -4.4734 28 1 1.8634 -2.9366 1.0289 29 1 1.0053 -2.7040 -0.5131 30 1 2.7231 -3.1703 -0.5121 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261140280.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:42 Heat of formation + Delta-G solvation = 39.942280 kcal Electronic energy + Delta-G solvation = -13808.306229 eV Core-core repulsion = 11413.203714 eV Total energy + Delta-G solvation = -2395.102514 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.50834 -36.05530 -34.95404 -32.58348 -31.39701 -28.57350 -28.41494 -27.60162 -24.42116 -21.62117 -21.29652 -19.12669 -17.23569 -16.71366 -16.12435 -15.27034 -14.43532 -14.28889 -13.66508 -13.43351 -13.17417 -12.86010 -12.57391 -12.49078 -12.15482 -11.96456 -11.23393 -10.98073 -10.70392 -10.64625 -10.35020 -9.82558 -9.53570 -9.17337 -8.58728 -8.34377 -8.18703 -5.95854 -3.96045 1.87558 2.50932 3.36458 3.42848 3.47638 3.55254 4.44471 4.50746 4.77107 5.12977 5.23654 5.36854 5.43871 5.46741 5.56497 5.75661 5.77111 5.93927 6.03848 6.08632 6.22144 6.48058 6.57744 7.41512 7.60515 7.80708 8.00980 8.05083 8.41943 8.64262 9.09601 9.66429 11.15950 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.049813 B = 0.007490 C = 0.007387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.962148 B = 3737.280041 C = 3789.682299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.012 3.988 3 N -0.379 5.379 4 O 0.094 5.906 5 C -0.039 4.039 6 C 0.176 3.824 7 H 0.103 0.897 8 N -0.816 5.816 9 C 0.033 3.967 10 C -0.498 4.498 11 H 0.065 0.935 12 C 0.052 3.948 13 N -0.900 5.900 14 Si 0.895 3.105 15 H -0.283 1.283 16 H -0.289 1.289 17 H -0.273 1.273 18 C -0.218 4.218 19 C -0.072 4.072 20 H 0.075 0.925 21 H 0.072 0.928 22 H 0.078 0.922 23 H 0.343 0.657 24 H 0.326 0.674 25 H 0.023 0.977 26 H 0.022 0.978 27 H 0.259 0.741 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.520 -0.263 7.869 13.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.147 4.147 3 N -0.086 5.086 4 O 0.031 5.969 5 C -0.105 4.105 6 C 0.062 3.938 7 H 0.120 0.880 8 N -0.343 5.343 9 C -0.005 4.005 10 C -0.536 4.536 11 H 0.083 0.917 12 C -0.148 4.148 13 N -0.540 5.540 14 Si 0.723 3.277 15 H -0.209 1.209 16 H -0.215 1.215 17 H -0.197 1.197 18 C -0.223 4.223 19 C -0.129 4.129 20 H 0.093 0.907 21 H 0.091 0.909 22 H 0.097 0.903 23 H 0.157 0.843 24 H 0.137 0.863 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.118 0.552 7.439 12.571 hybrid contribution -0.115 -0.570 -0.035 0.583 sum -10.234 -0.018 7.405 12.631 Atomic orbital electron populations 1.20081 0.86526 1.03363 1.02768 1.23413 0.98557 0.89049 1.03729 1.73773 0.89672 1.24313 1.20819 1.84746 1.21197 1.23200 1.67752 1.26546 1.00723 0.83357 0.99853 1.20746 0.80529 0.94590 0.97905 0.87954 1.58773 1.47502 1.24100 1.03925 1.19207 0.95801 0.98450 0.87011 1.21063 1.08554 1.27147 0.96862 0.91674 1.25024 0.97941 0.96109 0.95729 1.69977 1.39720 1.42564 1.01751 0.86538 0.82963 0.80327 0.77826 1.20883 1.21463 1.19740 1.21008 0.91652 0.97803 1.11793 1.20055 1.02013 0.88920 1.01949 0.90656 0.90923 0.90320 0.84341 0.86326 0.95863 0.95939 0.93097 0.91563 0.91550 0.90443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 10.39 36.01 0.37 -0.43 16 2 C 0.01 0.19 7.33 -82.10 -0.60 -0.41 16 3 N -0.38 -7.10 12.07 33.42 0.40 -6.69 16 4 O 0.09 1.82 11.19 17.18 0.19 2.02 16 5 C -0.04 -0.72 6.28 -35.30 -0.22 -0.94 16 6 C 0.18 3.46 3.09 -68.86 -0.21 3.25 16 7 H 0.10 1.94 7.44 -51.93 -0.39 1.55 16 8 N -0.82 -14.78 8.94 -5.65 -0.05 -14.83 16 9 C 0.03 0.82 4.60 -27.89 -0.13 0.69 16 10 C -0.50 -13.65 8.84 -34.44 -0.30 -13.95 16 11 H 0.07 1.76 7.74 -52.48 -0.41 1.35 16 12 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 13 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 14 Si 0.90 21.65 29.54 -169.99 -5.02 16.62 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 18 C -0.22 -3.61 6.32 -104.42 -0.66 -4.27 16 19 C -0.07 -0.95 10.00 36.00 0.36 -0.59 16 20 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 21 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.08 0.77 7.66 -51.93 -0.40 0.37 16 23 H 0.34 6.16 8.98 -39.29 -0.35 5.80 16 24 H 0.33 4.90 9.06 -39.29 -0.36 4.54 16 25 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.74 7.66 -51.93 -0.40 0.34 16 30 H 0.08 1.08 7.71 -51.93 -0.40 0.68 16 LS Contribution 263.93 15.07 3.98 3.98 Total: -1.00 -31.07 263.93 -5.20 -36.27 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -3.95 Total: 4.12 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -1.49 Total: -15.27 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 1.09 Total: -47.73 kcal Atomic # 8 Polarization: 1.82 SS G_CDS: 0.19 Total: 2.02 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -31.07 -5.20 -36.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261140280.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.217 kcal (2) G-P(sol) polarization free energy of solvation -31.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds