Wall clock time and date at job start Mon Mar 30 2020 03:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30175 * 126.79792 * 2 1 4 4 O 1.20925 * 111.60208 * 179.68775 * 3 2 1 5 5 C 1.34039 * 111.56837 * 0.45247 * 4 3 2 6 6 C 1.50698 * 126.78171 * 179.82721 * 5 4 3 7 7 H 1.09001 * 109.47556 * 164.68429 * 6 5 4 8 8 N 1.46905 * 109.46910 * 44.68468 * 6 5 4 9 9 C 1.52998 * 109.47049 * 284.68750 * 6 5 4 10 10 C 1.50698 * 109.47017 * 184.99831 * 9 6 5 11 11 H 1.08005 * 120.00198 * 359.97438 * 10 9 6 12 12 C 1.37882 * 120.00008 * 180.02562 * 10 9 6 13 13 N 1.31521 * 119.99866 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 119.99970 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47435 * 90.00210 * 14 12 10 16 16 H 1.48503 * 109.47271 * 209.99824 * 14 12 10 17 17 H 1.48494 * 109.47271 * 329.99600 * 14 12 10 18 18 C 1.35459 * 106.44359 * 359.56254 * 5 4 3 19 19 C 1.50695 * 128.00573 * 180.23763 * 18 5 4 20 20 H 1.08997 * 109.47498 * 270.03904 * 1 2 3 21 21 H 1.08998 * 109.47132 * 30.04196 * 1 2 3 22 22 H 1.09005 * 109.47237 * 150.04173 * 1 2 3 23 23 H 1.00901 * 110.99869 * 300.00472 * 8 6 5 24 24 H 1.00896 * 110.99543 * 63.95595 * 8 6 5 25 25 H 1.09001 * 109.47115 * 304.99584 * 9 6 5 26 26 H 1.09003 * 109.47470 * 64.99668 * 9 6 5 27 27 H 0.96995 * 119.99589 * 179.97438 * 13 12 10 28 28 H 1.08999 * 109.47293 * 90.00510 * 19 18 5 29 29 H 1.09000 * 109.47196 * 210.00061 * 19 18 5 30 30 H 1.09000 * 109.47480 * 330.00457 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2867 1.0424 0.0000 4 8 3.4537 0.7254 0.0061 5 6 3.6025 -0.6067 0.0013 6 6 4.9022 -1.3694 0.0027 7 1 4.7130 -2.4093 0.2693 8 7 5.8196 -0.7719 0.9822 9 6 5.5319 -1.3065 -1.3903 10 6 6.7670 -2.1694 -1.4226 11 1 7.0725 -2.7085 -0.5380 12 6 7.5076 -2.2700 -2.5813 13 7 7.1359 -1.6132 -3.6584 14 14 9.0388 -3.3390 -2.6212 15 1 8.6697 -4.7174 -3.0321 16 1 10.0103 -2.7763 -3.5932 17 1 9.6540 -3.3733 -1.2701 18 6 2.3539 -1.1320 0.0009 19 6 1.9591 -2.5863 0.0012 20 1 -0.3634 0.0007 1.0276 21 1 -0.3633 0.8896 -0.5145 22 1 -0.3634 -0.8904 -0.5132 23 1 6.0108 0.1929 0.7569 24 1 5.4550 -0.8590 1.9190 25 1 4.8167 -1.6681 -2.1290 26 1 5.8026 -0.2760 -1.6205 27 1 7.6571 -1.6836 -4.4734 28 1 1.8634 -2.9366 1.0289 29 1 1.0053 -2.7040 -0.5131 30 1 2.7231 -3.1703 -0.5121 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261140280.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:42 Heat of formation + Delta-G solvation = 18.159173 kcal Electronic energy + Delta-G solvation = -13809.250815 eV Core-core repulsion = 11413.203714 eV Total energy + Delta-G solvation = -2396.047101 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -45.85606 -37.66537 -36.23243 -34.62581 -32.73543 -30.31374 -29.66491 -28.83282 -26.28062 -23.35406 -22.62065 -20.54451 -18.75883 -18.42858 -17.73345 -16.93170 -16.37234 -15.71413 -15.06775 -14.56678 -14.39350 -14.16796 -13.84941 -13.80748 -13.53628 -13.24799 -13.08975 -12.72794 -12.52604 -12.34588 -11.94177 -11.69756 -11.27606 -10.81207 -10.52811 -10.04811 -9.65403 -8.12878 -6.20373 0.46564 1.24771 1.45794 1.47356 1.59069 2.15366 2.48596 3.21127 3.28447 3.51356 3.78881 3.92766 4.19946 4.36239 4.49605 4.64645 4.72612 4.80389 4.82126 4.89351 5.00041 5.07694 5.38216 5.41515 5.55326 5.83891 6.17095 6.33862 6.66474 6.93687 7.26898 7.47073 8.99594 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.049813 B = 0.007490 C = 0.007387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.962148 B = 3737.280041 C = 3789.682299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.015 3.985 3 N -0.404 5.404 4 O 0.067 5.933 5 C -0.064 4.064 6 C 0.193 3.807 7 H 0.114 0.886 8 N -0.821 5.821 9 C 0.041 3.959 10 C -0.506 4.506 11 H 0.070 0.930 12 C -0.006 4.006 13 N -0.941 5.941 14 Si 0.966 3.034 15 H -0.272 1.272 16 H -0.289 1.289 17 H -0.263 1.263 18 C -0.211 4.211 19 C -0.073 4.073 20 H 0.098 0.902 21 H 0.076 0.924 22 H 0.102 0.898 23 H 0.342 0.658 24 H 0.346 0.654 25 H -0.004 1.004 26 H -0.012 1.012 27 H 0.260 0.740 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.469 -1.664 9.053 14.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.144 4.144 3 N -0.115 5.115 4 O 0.008 5.992 5 C -0.130 4.130 6 C 0.079 3.921 7 H 0.132 0.868 8 N -0.349 5.349 9 C 0.003 3.997 10 C -0.544 4.544 11 H 0.089 0.911 12 C -0.202 4.202 13 N -0.582 5.582 14 Si 0.791 3.209 15 H -0.198 1.198 16 H -0.215 1.215 17 H -0.187 1.187 18 C -0.216 4.216 19 C -0.130 4.130 20 H 0.117 0.883 21 H 0.095 0.905 22 H 0.120 0.880 23 H 0.155 0.845 24 H 0.159 0.841 25 H 0.014 0.986 26 H 0.007 0.993 27 H 0.069 0.931 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.054 -0.865 8.654 14.065 hybrid contribution 0.086 -0.106 -0.390 0.413 sum -10.968 -0.971 8.264 13.768 Atomic orbital electron populations 1.20326 0.83017 1.04748 1.04668 1.24208 1.00659 0.88133 1.01391 1.73769 0.89735 1.25624 1.22366 1.84707 1.21885 1.23650 1.68919 1.26354 1.01048 0.83470 1.02122 1.20258 0.81068 0.95655 0.95091 0.86848 1.58690 1.47434 1.24005 1.04822 1.18983 0.95028 0.95752 0.89920 1.21424 1.09111 1.26944 0.96911 0.91148 1.25951 1.01351 0.97527 0.95398 1.70124 1.41287 1.44377 1.02460 0.85428 0.78783 0.78631 0.78065 1.19785 1.21537 1.18721 1.21546 0.90805 0.99656 1.09561 1.20215 1.02769 0.86256 1.03759 0.88341 0.90513 0.87978 0.84463 0.84082 0.98578 0.99342 0.93121 0.89059 0.89073 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.40 10.39 71.24 0.74 -0.65 16 2 C 0.02 0.48 7.33 43.58 0.32 0.80 16 3 N -0.40 -15.05 12.07 -49.56 -0.60 -15.65 16 4 O 0.07 2.67 11.19 71.64 0.80 3.48 16 5 C -0.06 -2.39 6.28 25.04 0.16 -2.24 16 6 C 0.19 7.62 3.09 44.17 0.14 7.76 16 7 H 0.11 4.20 7.44 -2.39 -0.02 4.18 16 8 N -0.82 -29.54 8.94 -171.80 -1.54 -31.08 16 9 C 0.04 2.11 4.60 29.85 0.14 2.25 16 10 C -0.51 -27.98 8.84 25.60 0.23 -27.75 16 11 H 0.07 3.75 7.74 -2.91 -0.02 3.73 16 12 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 13 N -0.94 -57.63 13.29 21.45 0.28 -57.34 16 14 Si 0.97 44.41 29.54 68.60 2.03 46.44 16 15 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 16 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 17 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 18 C -0.21 -6.68 6.32 -19.74 -0.12 -6.80 16 19 C -0.07 -1.71 10.00 71.23 0.71 -1.00 16 20 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 21 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 22 H 0.10 1.56 7.66 -2.38 -0.02 1.54 16 23 H 0.34 12.51 8.98 -89.69 -0.81 11.70 16 24 H 0.35 10.04 9.06 -89.70 -0.81 9.23 16 25 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 26 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 27 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 28 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.09 1.69 7.66 -2.39 -0.02 1.67 16 30 H 0.07 1.72 7.71 -2.39 -0.02 1.70 16 Total: -1.00 -67.88 263.93 3.29 -64.59 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -0.46 Total: 17.07 kcal Atomic # 6 Polarization: -30.27 SS G_CDS: 2.77 Total: -27.50 kcal Atomic # 7 Polarization: -102.22 SS G_CDS: -1.85 Total: -104.07 kcal Atomic # 8 Polarization: 2.67 SS G_CDS: 0.80 Total: 3.48 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -67.88 3.29 -64.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261140280.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.752 kcal (2) G-P(sol) polarization free energy of solvation -67.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds