Wall clock time and date at job start Mon Mar 30 2020 02:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34355 * 125.86556 * 2 1 4 4 C 1.31023 * 109.29914 * 179.76087 * 3 2 1 5 5 O 1.35508 * 125.76085 * 180.28766 * 4 3 2 6 6 N 1.35878 * 108.47070 * 0.44095 * 4 3 2 7 7 C 1.46496 * 126.47734 * 179.82431 * 6 4 3 8 8 C 1.52997 * 109.47294 * 269.68871 * 7 6 4 9 9 C 1.50706 * 109.47238 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99515 * 0.02562 * 9 8 7 11 11 C 1.37870 * 120.00176 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00200 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 120.00139 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.47145 * 89.99836 * 13 11 9 15 15 H 1.48496 * 109.47547 * 210.00333 * 13 11 9 16 16 H 1.48499 * 109.47030 * 330.00237 * 13 11 9 17 17 C 1.34423 * 125.86610 * 180.02562 * 2 1 3 18 18 C 1.50697 * 126.53958 * 359.97438 * 17 2 1 19 19 H 1.09002 * 109.47041 * 269.95741 * 1 2 3 20 20 H 1.08997 * 109.47512 * 29.95694 * 1 2 3 21 21 H 1.09005 * 109.47205 * 149.96243 * 1 2 3 22 22 H 0.96702 * 114.00264 * 270.17437 * 5 4 3 23 23 H 1.09001 * 109.47059 * 149.69161 * 7 6 4 24 24 H 1.09004 * 109.47074 * 29.69117 * 7 6 4 25 25 H 1.09001 * 109.46832 * 60.00150 * 8 7 6 26 26 H 1.09000 * 109.47611 * 300.00447 * 8 7 6 27 27 H 0.96999 * 120.00061 * 179.97438 * 12 11 9 28 28 H 1.08994 * 109.47691 * 269.95613 * 18 17 2 29 29 H 1.09000 * 109.47119 * 29.96282 * 18 17 2 30 30 H 1.09007 * 109.46669 * 149.95953 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2942 1.0888 0.0000 4 6 3.5500 0.7152 0.0052 5 8 4.6226 1.5434 0.0123 6 7 3.5952 -0.6428 -0.0013 7 6 4.8015 -1.4741 -0.0023 8 6 5.2206 -1.7630 -1.4451 9 6 6.4619 -2.6176 -1.4461 10 1 6.9070 -2.9243 -0.5111 11 6 7.0293 -3.0078 -2.6405 12 7 8.1122 -3.7540 -2.6414 13 14 6.2590 -2.4778 -4.2577 14 1 6.8484 -1.1839 -4.6861 15 1 6.5228 -3.5090 -5.2932 16 1 4.7933 -2.3192 -4.0793 17 6 2.2946 -1.0893 -0.0005 18 6 1.8391 -2.5258 -0.0006 19 1 -0.3633 -0.0008 1.0277 20 1 -0.3634 0.8903 -0.5131 21 1 -0.3634 -0.8897 -0.5144 22 1 4.9365 1.7880 -0.8690 23 1 4.5959 -2.4133 0.5113 24 1 5.6060 -0.9476 0.5114 25 1 5.4262 -0.8238 -1.9586 26 1 4.4162 -2.2894 -1.9587 27 1 8.5112 -4.0289 -3.4817 28 1 1.7304 -2.8727 1.0270 29 1 0.8804 -2.6029 -0.5135 30 1 2.5772 -3.1409 -0.5155 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261184683.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:06 Heat of formation + Delta-G solvation = 3.879129 kcal Electronic energy + Delta-G solvation = -13837.108577 eV Core-core repulsion = 11440.442247 eV Total energy + Delta-G solvation = -2396.666330 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.76376 -37.02272 -35.01494 -32.80312 -31.91970 -30.39603 -28.32377 -25.44761 -24.39057 -21.49602 -20.36682 -19.60624 -17.92728 -17.09579 -15.96527 -15.09719 -14.50693 -14.15650 -13.98175 -13.23329 -13.02161 -12.93143 -12.69248 -12.39406 -12.23437 -12.05554 -11.60179 -11.36225 -11.20553 -10.67033 -10.42192 -10.03239 -9.60260 -9.48947 -9.00186 -8.75147 -7.73833 -6.25165 -4.27296 2.19086 2.92437 3.16467 3.22778 3.25447 3.27972 4.21454 4.26515 5.01714 5.07440 5.22704 5.35323 5.42246 5.63797 5.71019 5.84673 5.89841 6.05040 6.05679 6.17768 6.22630 6.60795 6.79241 6.86041 7.06943 7.12601 7.49065 8.00089 8.25781 8.31190 8.75680 9.34741 10.87260 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.037120 B = 0.008803 C = 0.008316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.132162 B = 3179.983853 C = 3366.287548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.006 4.006 3 N -0.492 5.492 4 C 0.369 3.631 5 O -0.444 6.444 6 N -0.448 5.448 7 C 0.109 3.891 8 C -0.018 4.018 9 C -0.530 4.530 10 H 0.077 0.923 11 C 0.075 3.925 12 N -0.894 5.894 13 Si 0.879 3.121 14 H -0.275 1.275 15 H -0.284 1.284 16 H -0.266 1.266 17 C -0.010 4.010 18 C -0.078 4.078 19 H 0.063 0.937 20 H 0.066 0.934 21 H 0.067 0.933 22 H 0.398 0.602 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.014 0.986 26 H 0.024 0.976 27 H 0.267 0.733 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.758 4.184 2.987 12.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.135 4.135 3 N -0.222 5.222 4 C 0.069 3.931 5 O -0.244 6.244 6 N -0.141 5.141 7 C -0.012 4.012 8 C -0.056 4.056 9 C -0.568 4.568 10 H 0.095 0.905 11 C -0.128 4.128 12 N -0.531 5.531 13 Si 0.705 3.295 14 H -0.201 1.201 15 H -0.210 1.210 16 H -0.191 1.191 17 C -0.126 4.126 18 C -0.136 4.136 19 H 0.082 0.918 20 H 0.085 0.915 21 H 0.086 0.914 22 H 0.254 0.746 23 H 0.105 0.895 24 H 0.108 0.892 25 H 0.032 0.968 26 H 0.042 0.958 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.680 4.851 3.480 13.117 hybrid contribution 0.475 -0.459 -1.454 1.597 sum -11.205 4.392 2.026 12.204 Atomic orbital electron populations 1.19969 0.87773 1.02277 1.01771 1.20218 0.96030 0.87553 1.09707 1.70270 0.98885 1.30436 1.22598 1.20118 0.86848 0.78973 1.07127 1.84828 1.43013 1.62553 1.34044 1.46353 1.07676 1.06970 1.53093 1.22161 0.83095 0.94126 1.01784 1.19865 0.97885 0.97227 0.90640 1.20844 1.08949 1.32010 0.94982 0.90533 1.24946 0.94482 0.94281 0.99119 1.69886 1.20213 1.35746 1.27282 0.86800 0.80346 0.78743 0.83572 1.20095 1.20967 1.19101 1.20896 0.82941 0.97352 1.11405 1.20249 1.01850 0.89026 1.02502 0.91780 0.91534 0.91439 0.74552 0.89456 0.89188 0.96763 0.95817 0.92334 0.91143 0.90188 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.73 10.21 36.01 0.37 -0.37 16 2 C -0.01 -0.10 7.08 -82.83 -0.59 -0.68 16 3 N -0.49 -9.39 11.28 -10.93 -0.12 -9.52 16 4 C 0.37 6.98 9.07 -89.17 -0.81 6.17 16 5 O -0.44 -7.48 13.57 -18.22 -0.25 -7.73 16 6 N -0.45 -8.32 2.79 -113.95 -0.32 -8.64 16 7 C 0.11 2.10 5.76 -4.05 -0.02 2.07 16 8 C -0.02 -0.41 4.37 -27.88 -0.12 -0.53 16 9 C -0.53 -14.18 9.66 -34.44 -0.33 -14.51 16 10 H 0.08 2.18 7.99 -52.49 -0.42 1.76 16 11 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 12 N -0.89 -26.36 13.96 55.43 0.77 -25.58 16 13 Si 0.88 20.89 27.47 -169.99 -4.67 16.22 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 17 C -0.01 -0.17 6.96 -81.39 -0.57 -0.74 16 18 C -0.08 -1.03 9.78 36.00 0.35 -0.68 16 19 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 20 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 21 H 0.07 0.68 7.14 -51.93 -0.37 0.31 16 22 H 0.40 4.97 9.06 45.56 0.41 5.39 16 23 H 0.09 1.59 7.84 -51.93 -0.41 1.18 16 24 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 25 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 26 H 0.02 0.55 7.20 -51.93 -0.37 0.17 16 27 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.08 0.86 7.15 -51.93 -0.37 0.49 16 30 H 0.07 1.05 7.90 -51.93 -0.41 0.64 16 LS Contribution 260.89 15.07 3.93 3.93 Total: -1.00 -31.88 260.89 -5.66 -37.54 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -3.19 Total: 1.07 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -1.82 Total: -7.29 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 0.33 Total: -43.74 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: -0.25 Total: -7.73 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.22 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -31.88 -5.66 -37.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261184683.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.415 kcal (2) G-P(sol) polarization free energy of solvation -31.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds