Wall clock time and date at job start Mon Mar 30 2020 02:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34355 * 125.86556 * 2 1 4 4 C 1.31023 * 109.29914 * 179.76087 * 3 2 1 5 5 O 1.35508 * 125.76085 * 180.28766 * 4 3 2 6 6 N 1.35878 * 108.47070 * 0.44095 * 4 3 2 7 7 C 1.46496 * 126.47734 * 179.82431 * 6 4 3 8 8 C 1.52997 * 109.47294 * 269.68871 * 7 6 4 9 9 C 1.50706 * 109.47238 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99515 * 0.02562 * 9 8 7 11 11 C 1.37870 * 120.00176 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00200 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 120.00139 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.47145 * 89.99836 * 13 11 9 15 15 H 1.48496 * 109.47547 * 210.00333 * 13 11 9 16 16 H 1.48499 * 109.47030 * 330.00237 * 13 11 9 17 17 C 1.34423 * 125.86610 * 180.02562 * 2 1 3 18 18 C 1.50697 * 126.53958 * 359.97438 * 17 2 1 19 19 H 1.09002 * 109.47041 * 269.95741 * 1 2 3 20 20 H 1.08997 * 109.47512 * 29.95694 * 1 2 3 21 21 H 1.09005 * 109.47205 * 149.96243 * 1 2 3 22 22 H 0.96702 * 114.00264 * 270.17437 * 5 4 3 23 23 H 1.09001 * 109.47059 * 149.69161 * 7 6 4 24 24 H 1.09004 * 109.47074 * 29.69117 * 7 6 4 25 25 H 1.09001 * 109.46832 * 60.00150 * 8 7 6 26 26 H 1.09000 * 109.47611 * 300.00447 * 8 7 6 27 27 H 0.96999 * 120.00061 * 179.97438 * 12 11 9 28 28 H 1.08994 * 109.47691 * 269.95613 * 18 17 2 29 29 H 1.09000 * 109.47119 * 29.96282 * 18 17 2 30 30 H 1.09007 * 109.46669 * 149.95953 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2942 1.0888 0.0000 4 6 3.5500 0.7152 0.0052 5 8 4.6226 1.5434 0.0123 6 7 3.5952 -0.6428 -0.0013 7 6 4.8015 -1.4741 -0.0023 8 6 5.2206 -1.7630 -1.4451 9 6 6.4619 -2.6176 -1.4461 10 1 6.9070 -2.9243 -0.5111 11 6 7.0293 -3.0078 -2.6405 12 7 8.1122 -3.7540 -2.6414 13 14 6.2590 -2.4778 -4.2577 14 1 6.8484 -1.1839 -4.6861 15 1 6.5228 -3.5090 -5.2932 16 1 4.7933 -2.3192 -4.0793 17 6 2.2946 -1.0893 -0.0005 18 6 1.8391 -2.5258 -0.0006 19 1 -0.3633 -0.0008 1.0277 20 1 -0.3634 0.8903 -0.5131 21 1 -0.3634 -0.8897 -0.5144 22 1 4.9365 1.7880 -0.8690 23 1 4.5959 -2.4133 0.5113 24 1 5.6060 -0.9476 0.5114 25 1 5.4262 -0.8238 -1.9586 26 1 4.4162 -2.2894 -1.9587 27 1 8.5112 -4.0289 -3.4817 28 1 1.7304 -2.8727 1.0270 29 1 0.8804 -2.6029 -0.5135 30 1 2.5772 -3.1409 -0.5155 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261184683.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:06 Heat of formation + Delta-G solvation = -19.961472 kcal Electronic energy + Delta-G solvation = -13838.142383 eV Core-core repulsion = 11440.442247 eV Total energy + Delta-G solvation = -2397.700136 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.09322 -38.31467 -36.63567 -34.71028 -33.07353 -32.07499 -29.51228 -27.09918 -25.68963 -23.27080 -21.75886 -20.90285 -19.45741 -18.89583 -17.44192 -16.54758 -16.36050 -15.48359 -15.41141 -14.83579 -14.61963 -14.06244 -13.95719 -13.66409 -13.48319 -13.19995 -13.02983 -12.91031 -12.55821 -12.33772 -12.15155 -11.88122 -11.59204 -10.94429 -10.85798 -10.45485 -8.99585 -8.38027 -6.44825 0.86833 1.30090 1.32934 1.42736 1.58826 1.91949 2.27358 2.93226 2.97127 3.78499 3.83729 4.20234 4.24269 4.33022 4.51572 4.55644 4.75692 4.94170 4.97796 5.03365 5.12895 5.15997 5.19061 5.42312 5.47163 5.69629 5.92668 6.12449 6.61900 6.71888 6.98541 7.20765 8.77703 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.037120 B = 0.008803 C = 0.008316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.132162 B = 3179.983853 C = 3366.287548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.017 4.017 3 N -0.514 5.514 4 C 0.350 3.650 5 O -0.451 6.451 6 N -0.456 5.456 7 C 0.123 3.877 8 C -0.008 4.008 9 C -0.534 4.534 10 H 0.045 0.955 11 C 0.018 3.982 12 N -0.940 5.940 13 Si 0.944 3.056 14 H -0.268 1.268 15 H -0.280 1.280 16 H -0.254 1.254 17 C -0.021 4.021 18 C -0.076 4.076 19 H 0.078 0.922 20 H 0.066 0.934 21 H 0.092 0.908 22 H 0.414 0.586 23 H 0.096 0.904 24 H 0.086 0.914 25 H 0.016 0.984 26 H 0.024 0.976 27 H 0.270 0.730 28 H 0.088 0.912 29 H 0.108 0.892 30 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.861 4.431 2.424 14.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.145 4.145 3 N -0.245 5.245 4 C 0.051 3.949 5 O -0.254 6.254 6 N -0.151 5.151 7 C 0.002 3.998 8 C -0.046 4.046 9 C -0.572 4.572 10 H 0.063 0.937 11 C -0.181 4.181 12 N -0.580 5.580 13 Si 0.768 3.232 14 H -0.193 1.193 15 H -0.206 1.206 16 H -0.178 1.178 17 C -0.135 4.135 18 C -0.134 4.134 19 H 0.097 0.903 20 H 0.085 0.915 21 H 0.111 0.889 22 H 0.273 0.727 23 H 0.114 0.886 24 H 0.104 0.896 25 H 0.034 0.966 26 H 0.042 0.958 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.126 0.874 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.805 5.114 2.920 15.008 hybrid contribution 1.134 -0.525 -1.197 1.731 sum -12.670 4.589 1.723 13.586 Atomic orbital electron populations 1.20121 0.84721 1.03593 1.03128 1.20977 0.97939 0.86836 1.08770 1.70296 0.99268 1.31704 1.23221 1.20380 0.87316 0.79351 1.07840 1.84781 1.42668 1.62324 1.35641 1.46340 1.07995 1.06826 1.53911 1.21826 0.83703 0.94711 0.99598 1.19686 0.95816 0.96217 0.92918 1.21122 1.10207 1.32083 0.93815 0.93664 1.25825 0.94916 0.94359 1.03005 1.70020 1.22019 1.37531 1.28408 0.85755 0.79999 0.78526 0.78942 1.19282 1.20577 1.17760 1.21588 0.82122 0.99123 1.10674 1.20394 1.02640 0.86443 1.03913 0.90318 0.91461 0.88890 0.72692 0.88586 0.89591 0.96584 0.95753 0.92136 0.89331 0.87374 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.23 10.21 71.24 0.73 -0.50 16 2 C -0.02 -0.52 7.08 41.30 0.29 -0.23 16 3 N -0.51 -18.94 11.28 -302.07 -3.41 -22.35 16 4 C 0.35 12.90 9.07 179.84 1.63 14.53 16 5 O -0.45 -14.91 13.57 -88.10 -1.20 -16.10 16 6 N -0.46 -16.34 2.79 -625.47 -1.75 -18.09 16 7 C 0.12 4.64 5.76 86.38 0.50 5.13 16 8 C -0.01 -0.36 4.37 29.85 0.13 -0.23 16 9 C -0.53 -28.77 9.66 25.60 0.25 -28.52 16 10 H 0.05 2.65 7.99 -2.91 -0.02 2.63 16 11 C 0.02 0.98 5.47 84.65 0.46 1.44 16 12 N -0.94 -56.26 13.96 21.44 0.30 -55.96 16 13 Si 0.94 42.43 27.47 68.60 1.88 44.32 16 14 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 15 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 16 H -0.25 -10.79 6.54 99.48 0.65 -10.14 16 17 C -0.02 -0.65 6.96 40.79 0.28 -0.37 16 18 C -0.08 -1.77 9.78 71.23 0.70 -1.08 16 19 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 20 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 21 H 0.09 1.48 7.14 -2.38 -0.02 1.46 16 22 H 0.41 10.03 9.06 -74.06 -0.67 9.36 16 23 H 0.10 3.41 7.84 -2.39 -0.02 3.39 16 24 H 0.09 3.28 8.14 -2.38 -0.02 3.26 16 25 H 0.02 0.70 7.57 -2.39 -0.02 0.68 16 26 H 0.02 1.07 7.20 -2.39 -0.02 1.06 16 27 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 28 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.11 1.87 7.15 -2.39 -0.02 1.86 16 30 H 0.06 1.57 7.90 -2.38 -0.02 1.56 16 Total: -1.00 -67.89 260.89 1.22 -66.67 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.42 Total: 11.34 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: 4.97 Total: -9.82 kcal Atomic # 7 Polarization: -91.55 SS G_CDS: -4.85 Total: -96.40 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -1.20 Total: -16.10 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 1.88 Total: 44.32 kcal Total: -67.89 1.22 -66.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261184683.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.707 kcal (2) G-P(sol) polarization free energy of solvation -67.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds