Wall clock time and date at job start Mon Mar 30 2020 02:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34366 * 125.86506 * 2 1 4 4 C 1.31019 * 109.29757 * 180.02562 * 3 2 1 5 5 O 1.35506 * 125.76041 * 179.97438 * 4 3 2 6 6 N 1.35877 * 108.47299 * 359.97438 * 4 3 2 7 7 C 1.46504 * 126.47721 * 179.97438 * 6 4 3 8 8 H 1.08997 * 109.46922 * 180.02562 * 7 6 4 9 9 C 1.53003 * 109.46986 * 300.02768 * 7 6 4 10 10 C 1.50703 * 109.47029 * 60.02575 * 7 6 4 11 11 H 1.07994 * 119.99923 * 354.35692 * 10 7 6 12 12 C 1.37879 * 119.99681 * 174.35792 * 10 7 6 13 13 N 1.31514 * 119.99682 * 157.01271 * 12 10 7 14 14 Si 1.86798 * 120.00383 * 337.01697 * 12 10 7 15 15 H 1.48498 * 109.47257 * 180.02562 * 14 12 10 16 16 H 1.48500 * 109.47266 * 59.99607 * 14 12 10 17 17 H 1.48507 * 109.46756 * 299.99957 * 14 12 10 18 18 C 1.34424 * 125.86699 * 180.31423 * 2 1 3 19 19 C 1.50692 * 126.53928 * 359.97325 * 18 2 1 20 20 H 1.09002 * 109.46987 * 89.97817 * 1 2 3 21 21 H 1.08996 * 109.47323 * 209.97690 * 1 2 3 22 22 H 1.09001 * 109.47314 * 329.97825 * 1 2 3 23 23 H 0.96702 * 113.99935 * 270.01684 * 5 4 3 24 24 H 1.09005 * 109.46630 * 293.34175 * 9 7 6 25 25 H 1.08997 * 109.47378 * 53.34538 * 9 7 6 26 26 H 1.09006 * 109.46824 * 173.34671 * 9 7 6 27 27 H 0.96994 * 120.00153 * 354.92664 * 13 12 10 28 28 H 1.08999 * 109.47324 * 270.17363 * 19 18 2 29 29 H 1.08993 * 109.47767 * 30.17739 * 19 18 2 30 30 H 1.09008 * 109.47224 * 150.17795 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2942 1.0889 0.0000 4 6 3.5500 0.7153 -0.0006 5 8 4.6226 1.5434 -0.0012 6 7 3.5952 -0.6427 -0.0003 7 6 4.8015 -1.4740 -0.0013 8 1 4.5175 -2.5264 -0.0013 9 6 5.6299 -1.1692 -1.2511 10 6 5.6191 -1.1743 1.2287 11 1 5.3228 -0.3757 1.8926 12 6 6.7453 -1.9197 1.5063 13 7 7.6920 -1.4209 2.2709 14 14 6.9267 -3.6380 0.7963 15 1 8.2165 -4.2239 1.2415 16 1 6.9006 -3.5662 -0.6867 17 1 5.8066 -4.4901 1.2704 18 6 2.2946 -1.0893 -0.0060 19 6 1.8391 -2.5257 -0.0133 20 1 -0.3633 0.0004 -1.0277 21 1 -0.3634 -0.8901 0.5134 22 1 -0.3634 0.8898 0.5142 23 1 4.9333 1.7839 -0.8848 24 1 5.0848 -1.4959 -2.1368 25 1 5.8137 -0.0966 -1.3125 26 1 6.5813 -1.6982 -1.1943 27 1 7.6331 -0.5031 2.5792 28 1 1.7267 -2.8765 1.0126 29 1 0.8823 -2.6010 -0.5299 30 1 2.5790 -3.1390 -0.5279 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261220534.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:08 Heat of formation + Delta-G solvation = 8.282718 kcal Electronic energy + Delta-G solvation = -14314.309733 eV Core-core repulsion = 11917.834357 eV Total energy + Delta-G solvation = -2396.475376 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.40608 -36.64311 -35.13127 -32.40161 -31.65050 -30.09835 -27.76291 -25.10443 -24.30946 -22.10273 -19.74772 -19.33271 -17.76803 -17.04731 -15.73048 -15.09830 -14.01824 -13.71237 -13.53296 -12.96701 -12.82316 -12.66898 -12.53843 -12.34121 -12.01250 -11.89687 -11.50613 -11.24449 -11.00455 -10.73091 -10.32787 -10.05584 -9.41093 -9.22685 -8.72085 -8.38697 -7.39877 -6.69555 -4.31438 2.62332 3.18729 3.26156 3.33154 3.43360 3.58033 4.28517 4.56976 4.94783 5.31207 5.50622 5.61379 5.70374 5.84919 5.93192 6.00711 6.15372 6.16590 6.18287 6.22332 6.49455 6.51880 6.76615 7.07495 7.26660 7.53591 7.67681 8.20138 8.40396 8.68424 8.75472 9.35490 10.67686 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.037587 B = 0.011656 C = 0.010032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.768573 B = 2401.713590 C = 2790.479310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.011 4.011 3 N -0.505 5.505 4 C 0.383 3.617 5 O -0.432 6.432 6 N -0.421 5.421 7 C 0.233 3.767 8 H 0.048 0.952 9 C -0.159 4.159 10 C -0.617 4.617 11 H 0.068 0.932 12 C 0.044 3.956 13 N -0.883 5.883 14 Si 1.030 2.970 15 H -0.278 1.278 16 H -0.276 1.276 17 H -0.279 1.279 18 C -0.024 4.024 19 C -0.072 4.072 20 H 0.060 0.940 21 H 0.063 0.937 22 H 0.064 0.936 23 H 0.385 0.615 24 H 0.030 0.970 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.275 0.725 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.760 -2.292 -7.499 11.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.141 4.141 3 N -0.236 5.236 4 C 0.083 3.917 5 O -0.231 6.231 6 N -0.111 5.111 7 C 0.131 3.869 8 H 0.065 0.935 9 C -0.217 4.217 10 C -0.654 4.654 11 H 0.087 0.913 12 C -0.164 4.164 13 N -0.514 5.514 14 Si 0.857 3.143 15 H -0.203 1.203 16 H -0.202 1.202 17 H -0.205 1.205 18 C -0.141 4.141 19 C -0.130 4.130 20 H 0.079 0.921 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.239 0.761 24 H 0.049 0.951 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.792 -2.860 -6.853 10.764 hybrid contribution -0.284 0.718 -0.393 0.866 sum -8.077 -2.142 -7.246 11.060 Atomic orbital electron populations 1.19911 0.88215 1.02009 1.01337 1.20116 0.95735 0.87769 1.10505 1.70229 0.99098 1.30442 1.23850 1.19946 0.86375 0.79197 1.06141 1.84979 1.43110 1.62588 1.32421 1.46371 1.07123 1.06961 1.50693 1.19566 0.80277 0.90198 0.96852 0.93451 1.22484 1.00863 1.01894 0.96490 1.22016 1.11832 1.22394 1.09195 0.91345 1.25663 0.91131 1.03857 0.95765 1.70805 1.30356 1.17568 1.32673 0.84245 0.77206 0.76312 0.76572 1.20306 1.20163 1.20541 1.20809 0.83595 0.96979 1.12712 1.20150 1.00922 0.89409 1.02478 0.92134 0.91780 0.91725 0.76064 0.95068 0.93009 0.90880 0.91502 0.91195 0.90584 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.81 10.03 36.01 0.36 -0.45 16 2 C -0.01 -0.22 7.08 -82.83 -0.59 -0.80 16 3 N -0.51 -11.23 11.28 -10.93 -0.12 -11.35 16 4 C 0.38 8.74 8.27 -89.18 -0.74 8.01 16 5 O -0.43 -9.28 12.53 -18.21 -0.23 -9.51 16 6 N -0.42 -9.45 2.64 -108.10 -0.29 -9.74 16 7 C 0.23 5.40 2.49 -69.08 -0.17 5.22 16 8 H 0.05 1.07 5.43 -51.93 -0.28 0.79 16 9 C -0.16 -3.28 9.05 37.16 0.34 -2.94 16 10 C -0.62 -16.96 8.56 -34.44 -0.29 -17.25 16 11 H 0.07 2.16 7.92 -52.49 -0.42 1.75 16 12 C 0.04 1.22 5.20 -17.82 -0.09 1.13 16 13 N -0.88 -26.10 13.70 55.43 0.76 -25.34 16 14 Si 1.03 23.22 26.44 -169.99 -4.49 18.72 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.28 -5.62 6.13 56.52 0.35 -5.27 16 17 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 18 C -0.02 -0.47 6.96 -81.39 -0.57 -1.04 16 19 C -0.07 -1.09 9.61 36.00 0.35 -0.74 16 20 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.06 0.77 7.78 -51.93 -0.40 0.37 16 22 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 23 H 0.38 6.13 8.36 45.56 0.38 6.51 16 24 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.05 1.03 6.34 -51.93 -0.33 0.70 16 26 H 0.07 1.54 5.46 -51.93 -0.28 1.25 16 27 H 0.27 8.23 8.73 -40.82 -0.36 7.87 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.08 0.91 7.79 -51.93 -0.40 0.50 16 30 H 0.06 0.94 7.24 -51.92 -0.38 0.57 16 LS Contribution 251.81 15.07 3.79 3.79 Total: -1.00 -32.25 251.81 -5.00 -37.25 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -3.01 Total: 5.06 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -1.41 Total: -8.87 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: 0.35 Total: -46.43 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: -0.23 Total: -9.51 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -4.49 Total: 18.72 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -32.25 -5.00 -37.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261220534.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.528 kcal (2) G-P(sol) polarization free energy of solvation -32.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds