Wall clock time and date at job start Mon Mar 30 2020 02:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31472 * 1 3 3 Si 1.86803 * 119.99701 * 2 1 4 4 H 1.48502 * 109.46722 * 239.99962 * 3 2 1 5 5 H 1.48503 * 109.47354 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47579 * 119.99963 * 3 2 1 7 7 C 1.38869 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00305 * 191.30001 * 7 2 1 9 9 N 1.37191 * 120.00079 * 11.29437 * 7 2 1 10 10 C 1.46126 * 119.66872 * 24.60532 * 9 7 2 11 11 C 1.51692 * 110.86229 * 147.99624 * 10 9 7 12 12 H 1.09002 * 109.94478 * 173.06765 * 11 10 9 13 13 C 1.54156 * 111.45178 * 295.96748 * 11 10 9 14 14 C 1.54487 * 103.75723 * 158.46958 * 13 11 10 15 15 C 1.53948 * 106.59032 * 336.88713 * 14 13 11 16 16 C 1.54110 * 111.45549 * 50.95310 * 11 10 9 17 17 H 1.09005 * 112.35882 * 80.47948 * 16 11 10 18 18 N 1.46194 * 110.34116 * 315.42082 * 16 11 10 19 19 C 1.33529 * 123.57240 * 19.29365 * 18 16 11 20 20 O 1.21586 * 118.71836 * 181.25432 * 19 18 16 21 21 H 0.97005 * 120.00259 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.18887 * 268.33698 * 10 9 7 23 23 H 1.08999 * 109.19046 * 27.64812 * 10 9 7 24 24 H 1.08995 * 110.53380 * 39.91641 * 13 11 10 25 25 H 1.09008 * 110.73258 * 277.11069 * 13 11 10 26 26 H 1.08999 * 110.03182 * 217.60763 * 14 13 11 27 27 H 1.09000 * 110.07611 * 96.19253 * 14 13 11 28 28 H 1.09002 * 110.05680 * 239.71291 * 15 14 13 29 29 H 1.08999 * 110.06065 * 118.21638 * 15 14 13 30 30 H 0.96996 * 118.21467 * 199.26567 * 18 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2486 1.6178 0.0000 4 1 3.1024 1.6964 -1.2125 5 1 1.2836 2.7465 -0.0006 6 1 3.1024 1.6966 1.2124 7 6 2.0091 -1.2026 0.0005 8 1 3.0734 -1.2116 0.1838 9 7 1.3432 -2.3794 -0.2316 10 6 0.0916 -2.3656 -0.9858 11 6 -0.0720 -3.6448 -1.7844 12 1 -1.0608 -3.6735 -2.2421 13 6 1.0249 -3.7829 -2.8587 14 6 1.0541 -5.2976 -3.1614 15 6 0.4716 -6.0044 -1.9239 16 6 0.1335 -4.8909 -0.9012 17 1 -0.7542 -5.1370 -0.3184 18 7 1.3053 -4.7187 -0.0441 19 6 1.8475 -3.5309 0.2354 20 8 2.8369 -3.4919 0.9411 21 1 -0.4851 0.8401 -0.0004 22 1 -0.7435 -2.2668 -0.2922 23 1 0.0935 -1.5151 -1.6676 24 1 1.9869 -3.4519 -2.4677 25 1 0.7618 -3.2187 -3.7536 26 1 2.0800 -5.6249 -3.3299 27 1 0.4440 -5.5159 -4.0378 28 1 1.2086 -6.6880 -1.5024 29 1 -0.4322 -6.5496 -2.1957 30 1 1.7107 -5.5103 0.3429 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261257567.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:41 Heat of formation + Delta-G solvation = -46.503805 kcal Electronic energy + Delta-G solvation = -14697.814851 eV Core-core repulsion = 12298.963753 eV Total energy + Delta-G solvation = -2398.851098 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.72415 -38.64913 -36.77879 -34.11082 -33.46151 -30.86801 -28.77044 -26.89916 -25.37058 -22.64040 -21.33093 -20.20006 -18.26149 -18.16380 -17.77442 -16.61015 -16.38766 -15.71525 -15.36305 -15.27128 -14.65565 -14.03355 -13.85951 -13.32763 -12.88173 -12.67890 -12.50978 -12.14446 -12.07453 -11.99044 -11.75669 -11.67577 -11.33183 -10.88960 -10.65342 -9.88671 -9.48731 -8.25783 -5.90022 1.40494 1.42836 1.51753 2.23642 2.45481 2.62405 3.17513 3.45822 3.63234 3.74528 3.99277 4.45129 4.51149 4.55854 4.63468 4.73800 4.90077 4.93865 5.07876 5.18219 5.24933 5.33304 5.46827 5.48687 5.54907 5.80035 6.30953 6.45625 6.82669 7.29351 7.72344 8.26671 8.79284 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.045261 B = 0.011326 C = 0.010337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.490312 B = 2471.515307 C = 2708.053742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.009 4.009 3 Si 0.990 3.010 4 H -0.267 1.267 5 H -0.270 1.270 6 H -0.279 1.279 7 C -0.324 4.324 8 H 0.065 0.935 9 N -0.476 5.476 10 C 0.160 3.840 11 C -0.121 4.121 12 H 0.125 0.875 13 C -0.115 4.115 14 C -0.114 4.114 15 C -0.121 4.121 16 C 0.136 3.864 17 H 0.095 0.905 18 N -0.731 5.731 19 C 0.656 3.344 20 O -0.686 6.686 21 H 0.270 0.730 22 H 0.036 0.964 23 H 0.060 0.940 24 H 0.026 0.974 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.105 0.895 30 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.807 -8.896 -8.184 13.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.209 4.209 3 Si 0.813 3.187 4 H -0.192 1.192 5 H -0.194 1.194 6 H -0.205 1.205 7 C -0.453 4.453 8 H 0.083 0.917 9 N -0.200 5.200 10 C 0.036 3.964 11 C -0.140 4.140 12 H 0.143 0.857 13 C -0.153 4.153 14 C -0.151 4.151 15 C -0.159 4.159 16 C 0.032 3.968 17 H 0.112 0.888 18 N -0.389 5.389 19 C 0.357 3.643 20 O -0.574 6.574 21 H 0.079 0.921 22 H 0.055 0.945 23 H 0.079 0.921 24 H 0.045 0.955 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.109 0.891 28 H 0.091 0.909 29 H 0.123 0.877 30 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -4.597 -8.526 -7.958 12.537 hybrid contribution 0.672 0.806 0.546 1.183 sum -3.925 -7.720 -7.412 11.399 Atomic orbital electron populations 1.70094 1.06515 1.28128 1.50079 1.26034 0.96538 1.02047 0.96296 0.85055 0.77835 0.76947 0.78813 1.19238 1.19421 1.20451 1.19407 0.92588 0.83785 1.49489 0.91664 1.42517 1.23425 1.03890 1.50169 1.20670 0.85399 0.96505 0.93793 1.22365 1.01784 0.93690 0.96136 0.85743 1.22205 0.97235 0.97993 0.97869 1.22122 1.01193 0.92980 0.98802 1.22687 1.02499 0.96480 0.94270 1.22126 0.87900 0.95977 0.90831 0.88752 1.44706 1.33570 1.05925 1.54654 1.15814 0.84428 0.82316 0.81696 1.90695 1.32211 1.87277 1.47176 0.92081 0.94528 0.92129 0.95529 0.90712 0.92629 0.89088 0.90898 0.87650 0.75859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.61 10.70 21.65 0.23 -50.38 16 2 C -0.01 -0.51 5.06 84.90 0.43 -0.08 16 3 Si 0.99 44.69 29.57 68.60 2.03 46.71 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.32 -19.60 9.14 84.01 0.77 -18.83 16 8 H 0.07 4.21 7.42 -2.91 -0.02 4.19 16 9 N -0.48 -26.28 2.52 -657.80 -1.66 -27.94 16 10 C 0.16 7.44 4.23 86.02 0.36 7.80 16 11 C -0.12 -4.00 3.03 -10.46 -0.03 -4.03 16 12 H 0.12 3.24 8.14 -2.39 -0.02 3.22 16 13 C -0.12 -3.69 6.02 31.49 0.19 -3.50 16 14 C -0.11 -2.64 6.81 31.42 0.21 -2.43 16 15 C -0.12 -2.58 6.43 31.57 0.20 -2.37 16 16 C 0.14 4.05 4.21 46.08 0.19 4.24 16 17 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 18 N -0.73 -28.85 4.90 -455.80 -2.23 -31.08 16 19 C 0.66 35.12 7.52 179.65 1.35 36.47 16 20 O -0.69 -42.81 16.68 -3.99 -0.07 -42.87 16 21 H 0.27 14.09 8.31 -92.70 -0.77 13.32 16 22 H 0.04 1.83 7.68 -2.38 -0.02 1.81 16 23 H 0.06 3.04 6.85 -2.39 -0.02 3.02 16 24 H 0.03 1.09 7.13 -2.39 -0.02 1.07 16 25 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 26 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.07 1.51 7.80 -2.39 -0.02 1.49 16 29 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.40 14.27 8.54 -92.71 -0.79 13.47 16 Total: -1.00 -73.68 240.72 2.33 -71.35 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.35 Total: 16.96 kcal Atomic # 6 Polarization: 13.58 SS G_CDS: 3.68 Total: 17.26 kcal Atomic # 7 Polarization: -105.74 SS G_CDS: -3.66 Total: -109.40 kcal Atomic # 8 Polarization: -42.81 SS G_CDS: -0.07 Total: -42.87 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -73.68 2.33 -71.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261257567.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.843 kcal (2) G-P(sol) polarization free energy of solvation -73.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds