Wall clock time and date at job start Mon Mar 30 2020 03:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47352 * 2 1 4 4 N 1.30504 * 125.64954 * 90.02415 * 3 2 1 5 5 C 1.34121 * 109.25569 * 179.97438 * 4 3 2 6 6 C 1.50707 * 125.99020 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.47047 * 65.02146 * 6 5 4 8 8 O 1.42902 * 109.46940 * 185.02059 * 6 5 4 9 9 C 1.50695 * 109.46699 * 305.02287 * 6 5 4 10 10 H 1.07995 * 120.00608 * 359.97438 * 9 6 5 11 11 C 1.37882 * 119.99823 * 180.02562 * 9 6 5 12 12 N 1.31518 * 120.00220 * 180.02562 * 11 9 6 13 13 Si 1.86800 * 120.00002 * 359.97438 * 11 9 6 14 14 H 1.48496 * 109.47473 * 90.00038 * 13 11 9 15 15 H 1.48496 * 109.46980 * 210.00308 * 13 11 9 16 16 H 1.48507 * 109.46901 * 329.99919 * 13 11 9 17 17 C 1.34666 * 108.02399 * 359.97438 * 5 4 3 18 18 N 1.35039 * 125.65013 * 269.99957 * 3 2 1 19 19 C 1.46494 * 126.39794 * 0.02562 * 18 3 2 20 20 H 1.09004 * 109.47406 * 300.00079 * 1 2 3 21 21 H 1.09001 * 109.47235 * 59.99831 * 1 2 3 22 22 H 1.09002 * 109.47392 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47406 * 239.99921 * 2 1 3 24 24 H 1.09001 * 109.47235 * 120.00169 * 2 1 3 25 25 H 0.96703 * 113.99539 * 60.00295 * 8 6 5 26 26 H 0.96993 * 120.00338 * 180.02562 * 12 11 9 27 27 H 1.08000 * 126.59547 * 179.97438 * 17 5 4 28 28 H 1.08996 * 109.47302 * 89.99850 * 19 18 3 29 29 H 1.08999 * 109.47145 * 210.00006 * 19 18 3 30 30 H 1.08997 * 109.47143 * 329.99832 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2863 2.1377 1.0605 5 6 2.7156 3.3507 0.6819 6 6 3.1137 4.4762 1.6018 7 1 3.9993 4.1871 2.1675 8 8 3.4018 5.6434 0.8293 9 6 1.9832 4.7702 2.5539 10 1 1.0680 4.1997 2.4983 11 6 2.1170 5.7686 3.4955 12 7 1.1306 6.0250 4.3268 13 14 3.6997 6.7561 3.5913 14 1 3.5957 7.9451 2.7079 15 1 3.9236 7.1976 4.9913 16 1 4.8383 5.9103 3.1510 17 6 2.7288 3.3867 -0.6642 18 7 2.2947 2.1628 -1.0973 19 6 2.1437 1.7373 -2.4909 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 2.6567 5.9580 0.2993 26 1 1.2246 6.7275 4.9889 27 1 3.0238 4.2211 -1.2831 28 1 1.1375 1.9747 -2.8363 29 1 2.8731 2.2584 -3.1110 30 1 2.3082 0.6622 -2.5624 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261273751.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:16 Heat of formation + Delta-G solvation = 6.581653 kcal Electronic energy + Delta-G solvation = -13885.102298 eV Core-core repulsion = 11488.553158 eV Total energy + Delta-G solvation = -2396.549140 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.53289 -36.11054 -33.55457 -33.36289 -32.13880 -28.69635 -27.64356 -26.02988 -23.64797 -22.25927 -19.56137 -19.25265 -17.29544 -16.41499 -15.37604 -14.80160 -14.56695 -14.15340 -13.92920 -13.51730 -13.00269 -12.77816 -12.62914 -12.58755 -11.97614 -11.58237 -11.43066 -11.02763 -10.85970 -10.63251 -9.99420 -9.32422 -9.14347 -8.95716 -8.57596 -8.52753 -7.49507 -5.98971 -4.07616 2.57776 3.20721 3.53264 3.55332 3.68703 3.86701 4.60057 4.72271 4.81125 5.02133 5.13744 5.25645 5.35892 5.42988 5.49808 5.60216 5.85075 5.90287 6.03551 6.12386 6.32145 6.45025 6.82937 7.29633 7.47477 7.64766 7.78092 8.43321 8.74413 9.02560 9.14412 9.63398 11.11926 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.044601 B = 0.009108 C = 0.008025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.639982 B = 3073.464020 C = 3488.239076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.031 4.031 3 C 0.187 3.813 4 N -0.464 5.464 5 C 0.027 3.973 6 C 0.263 3.737 7 H 0.074 0.926 8 O -0.583 6.583 9 C -0.535 4.535 10 H 0.077 0.923 11 C 0.078 3.922 12 N -0.895 5.895 13 Si 0.912 3.088 14 H -0.279 1.279 15 H -0.305 1.305 16 H -0.268 1.268 17 C -0.079 4.079 18 N -0.468 5.468 19 C 0.078 3.922 20 H 0.066 0.934 21 H 0.049 0.951 22 H 0.060 0.940 23 H 0.069 0.931 24 H 0.091 0.909 25 H 0.362 0.638 26 H 0.264 0.736 27 H 0.170 0.830 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.306 -9.537 -13.728 16.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.070 4.070 3 C -0.075 4.075 4 N -0.184 5.184 5 C -0.103 4.103 6 C 0.205 3.795 7 H 0.092 0.908 8 O -0.388 6.388 9 C -0.573 4.573 10 H 0.095 0.905 11 C -0.126 4.126 12 N -0.533 5.533 13 Si 0.742 3.258 14 H -0.206 1.206 15 H -0.233 1.233 16 H -0.193 1.193 17 C -0.208 4.208 18 N -0.154 5.154 19 C -0.066 4.066 20 H 0.085 0.915 21 H 0.068 0.932 22 H 0.079 0.921 23 H 0.088 0.912 24 H 0.110 0.890 25 H 0.208 0.792 26 H 0.073 0.927 27 H 0.187 0.813 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.744 -9.786 -12.652 16.089 hybrid contribution 0.183 0.920 -1.088 1.436 sum 1.927 -8.866 -13.739 16.465 Atomic orbital electron populations 1.21729 0.94336 1.01586 1.02742 1.19838 0.96133 0.87889 1.03180 1.23272 1.05983 0.96593 0.81639 1.70152 1.16661 1.04189 1.27394 1.21916 1.01599 0.94843 0.91920 1.18226 0.96977 0.78002 0.86307 0.90831 1.86406 1.42374 1.46562 1.63454 1.21399 1.01664 1.18829 1.15369 0.90506 1.25043 0.96794 0.96512 0.94238 1.69960 1.32273 1.31504 1.19571 0.86281 0.83948 0.80578 0.75007 1.20555 1.23343 1.19303 1.22292 1.12336 0.89519 0.96680 1.45115 1.51219 1.12318 1.06721 1.21871 1.02733 1.01420 0.80540 0.91474 0.93203 0.92123 0.91237 0.89025 0.79166 0.92689 0.81298 0.91243 0.90189 0.90178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.89 37.15 0.37 -1.39 16 2 C -0.03 -0.41 6.24 -27.89 -0.17 -0.58 16 3 C 0.19 3.37 7.16 -155.42 -1.11 2.26 16 4 N -0.46 -10.73 11.23 -7.07 -0.08 -10.81 16 5 C 0.03 0.62 6.25 -82.85 -0.52 0.11 16 6 C 0.26 6.77 2.86 -29.03 -0.08 6.69 16 7 H 0.07 1.99 7.20 -51.93 -0.37 1.62 16 8 O -0.58 -13.63 10.43 -35.23 -0.37 -13.99 16 9 C -0.53 -15.95 9.31 -34.44 -0.32 -16.27 16 10 H 0.08 2.54 7.98 -52.49 -0.42 2.12 16 11 C 0.08 2.34 5.47 -17.82 -0.10 2.24 16 12 N -0.90 -28.34 13.96 55.43 0.77 -27.56 16 13 Si 0.91 23.93 26.18 -169.99 -4.45 19.48 16 14 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 15 H -0.31 -7.93 7.11 56.52 0.40 -7.53 16 16 H -0.27 -6.97 6.54 56.52 0.37 -6.60 16 17 C -0.08 -1.48 10.75 -16.56 -0.18 -1.66 16 18 N -0.47 -7.53 3.15 -121.29 -0.38 -7.91 16 19 C 0.08 0.78 10.97 59.84 0.66 1.44 16 20 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.07 0.69 7.07 -51.93 -0.37 0.32 16 24 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.36 7.39 8.79 45.56 0.40 7.79 16 26 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 27 H 0.17 2.72 7.83 -52.49 -0.41 2.31 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.63 7.04 -51.93 -0.37 0.26 16 LS Contribution 257.69 15.07 3.88 3.88 Total: -1.00 -35.76 257.69 -5.32 -41.08 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -3.24 Total: 3.02 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -1.46 Total: -7.17 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.31 Total: -46.29 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.37 Total: -13.99 kcal Atomic # 14 Polarization: 23.93 SS G_CDS: -4.45 Total: 19.48 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -35.76 -5.32 -41.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261273751.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.657 kcal (2) G-P(sol) polarization free energy of solvation -35.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds