Wall clock time and date at job start Mon Mar 30 2020 03:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47348 * 2 1 4 4 N 1.30253 * 125.61674 * 89.97624 * 3 2 1 5 5 C 1.34480 * 108.69901 * 179.77867 * 4 3 2 6 6 C 1.34335 * 107.66686 * 0.39622 * 5 4 3 7 7 C 1.50704 * 126.44007 * 179.87603 * 6 5 4 8 8 H 1.08997 * 109.47294 * 359.71100 * 7 6 5 9 9 C 1.50700 * 109.46927 * 239.70830 * 7 6 5 10 10 H 1.08000 * 120.00259 * 265.52038 * 9 7 6 11 11 C 1.37885 * 119.99671 * 85.51653 * 9 7 6 12 12 N 1.31507 * 119.99994 * 356.42126 * 11 9 7 13 13 Si 1.86805 * 119.99784 * 176.14539 * 11 9 7 14 14 H 1.48496 * 109.46962 * 180.27870 * 13 11 9 15 15 H 1.48502 * 109.47013 * 300.27659 * 13 11 9 16 16 H 1.48501 * 109.47181 * 60.27564 * 13 11 9 17 17 C 1.53006 * 109.46956 * 119.71526 * 7 6 5 18 18 N 1.46893 * 109.46926 * 185.33391 * 17 7 6 19 19 O 1.33966 * 125.61731 * 270.00633 * 3 2 1 20 20 H 1.09002 * 109.46234 * 299.99722 * 1 2 3 21 21 H 1.09000 * 109.47207 * 59.99516 * 1 2 3 22 22 H 1.08997 * 109.47401 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46703 * 240.00512 * 2 1 3 24 24 H 1.09000 * 109.47702 * 120.00296 * 2 1 3 25 25 H 1.07994 * 126.16887 * 180.27054 * 5 4 3 26 26 H 0.97004 * 120.00035 * 354.03252 * 12 11 9 27 27 H 1.09004 * 109.46622 * 305.33629 * 17 7 6 28 28 H 1.08994 * 109.47156 * 65.33050 * 17 7 6 29 29 H 1.00900 * 111.00147 * 180.44055 * 18 17 7 30 30 H 1.00893 * 111.00469 * 304.39897 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2849 2.1361 1.0589 5 6 2.7186 3.3475 0.6675 6 6 2.7195 3.3658 -0.6757 7 6 3.1278 4.5197 -1.5549 8 1 3.4259 5.3632 -0.9322 9 6 1.9657 4.9237 -2.4252 10 1 1.8728 4.5213 -3.4231 11 6 1.0210 5.8072 -1.9473 12 7 1.0950 6.2426 -0.7086 13 14 -0.3595 6.3915 -3.0619 14 1 -1.2317 7.3345 -2.3168 15 1 0.2170 7.0798 -4.2447 16 1 -1.1612 5.2246 -3.5102 17 6 4.3035 4.0968 -2.4381 18 7 4.7836 5.2560 -3.2020 19 8 2.2924 2.1564 -1.0890 20 1 -0.3632 0.5138 0.8901 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 3.0112 4.1598 1.3162 26 1 1.7612 5.8777 -0.1052 27 1 5.1097 3.7152 -1.8115 28 1 3.9785 3.3171 -3.1268 29 1 5.5561 5.0009 -3.7989 30 1 4.0357 5.6719 -3.7364 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261282052.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:22 Heat of formation + Delta-G solvation = -25.723536 kcal Electronic energy + Delta-G solvation = -14015.782475 eV Core-core repulsion = 11617.832477 eV Total energy + Delta-G solvation = -2397.949998 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.14654 -37.55856 -35.67231 -34.71672 -34.43439 -31.54167 -28.51714 -26.18141 -25.02508 -23.35578 -22.58611 -21.52941 -19.06352 -17.83664 -17.38756 -16.83249 -16.38153 -15.68691 -15.42565 -15.03754 -14.71316 -14.44622 -14.13328 -13.67813 -13.42735 -12.90378 -12.66281 -12.58459 -12.20059 -12.13641 -12.05330 -11.92059 -11.53091 -10.88920 -10.67046 -9.57426 -9.40486 -8.67115 -6.45244 0.69607 1.51584 1.57317 1.76783 1.78545 1.92327 2.52523 3.08024 3.23938 3.77846 4.08005 4.18191 4.22566 4.25869 4.38268 4.45437 4.66291 4.74053 4.85118 4.90389 4.98085 5.16682 5.24916 5.29686 5.52952 5.86510 6.08173 6.29141 6.48138 6.76470 6.85862 7.35230 8.69527 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.025117 B = 0.011889 C = 0.009591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.519278 B = 2354.513799 C = 2918.800661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.017 4.017 3 C 0.150 3.850 4 N -0.502 5.502 5 C -0.101 4.101 6 C 0.005 3.995 7 C 0.099 3.901 8 H 0.051 0.949 9 C -0.594 4.594 10 H 0.052 0.948 11 C -0.020 4.020 12 N -0.924 5.924 13 Si 1.110 2.890 14 H -0.287 1.287 15 H -0.260 1.260 16 H -0.278 1.278 17 C 0.093 3.907 18 N -0.845 5.845 19 O -0.211 6.211 20 H 0.045 0.955 21 H 0.042 0.958 22 H 0.107 0.893 23 H 0.111 0.889 24 H 0.120 0.880 25 H 0.172 0.828 26 H 0.262 0.738 27 H 0.057 0.943 28 H 0.015 0.985 29 H 0.345 0.655 30 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.384 -9.895 -2.996 10.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.055 4.055 3 C -0.057 4.057 4 N -0.231 5.231 5 C -0.238 4.238 6 C -0.049 4.049 7 C 0.079 3.921 8 H 0.069 0.931 9 C -0.632 4.632 10 H 0.070 0.930 11 C -0.221 4.221 12 N -0.559 5.559 13 Si 0.932 3.068 14 H -0.213 1.213 15 H -0.185 1.185 16 H -0.204 1.204 17 C -0.039 4.039 18 N -0.376 5.376 19 O -0.098 6.098 20 H 0.064 0.936 21 H 0.062 0.938 22 H 0.126 0.874 23 H 0.129 0.871 24 H 0.138 0.862 25 H 0.189 0.811 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.033 0.967 29 H 0.158 0.842 30 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.208 -8.772 -1.781 8.953 hybrid contribution 1.111 -0.932 -0.932 1.724 sum 1.318 -9.703 -2.713 10.161 Atomic orbital electron populations 1.21769 0.92863 1.04218 1.01463 1.20254 0.96994 0.81746 1.06471 1.27290 1.01453 0.98440 0.78547 1.70206 1.17314 1.04166 1.31449 1.22951 1.10306 0.96849 0.93663 1.24984 0.98757 0.85451 0.95735 1.17692 0.94651 0.86893 0.92838 0.93134 1.21992 1.09969 1.30280 1.00909 0.93018 1.27228 1.01987 0.94191 0.98711 1.70875 1.36283 1.42558 1.06186 0.83026 0.73292 0.76427 0.74090 1.21304 1.18452 1.20386 1.21453 0.95317 0.91447 0.95661 1.58573 1.14029 1.30707 1.34302 1.84352 1.64245 1.23027 1.38202 0.93566 0.93844 0.87422 0.87077 0.86177 0.81053 0.92742 0.92477 0.96719 0.84172 0.83726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.89 71.98 0.71 -2.80 16 2 C -0.02 -0.44 6.56 29.85 0.20 -0.24 16 3 C 0.15 6.00 7.60 88.34 0.67 6.67 16 4 N -0.50 -22.39 11.29 -303.83 -3.43 -25.83 16 5 C -0.10 -4.82 11.47 83.39 0.96 -3.86 16 6 C 0.01 0.26 5.65 24.79 0.14 0.40 16 7 C 0.10 4.89 2.03 -12.28 -0.02 4.87 16 8 H 0.05 2.75 6.98 -2.39 -0.02 2.73 16 9 C -0.59 -31.72 7.33 25.60 0.19 -31.53 16 10 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 11 C -0.02 -1.12 5.46 84.66 0.46 -0.66 16 12 N -0.92 -55.17 13.57 21.45 0.29 -54.87 16 13 Si 1.11 48.80 29.91 68.60 2.05 50.85 16 14 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 15 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 16 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 17 C 0.09 3.84 6.21 86.31 0.54 4.38 16 18 N -0.84 -31.33 9.62 -186.73 -1.80 -33.13 16 19 O -0.21 -9.78 10.78 -3.72 -0.04 -9.82 16 20 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 21 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 22 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 24 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 25 H 0.17 7.84 8.06 -2.91 -0.02 7.81 16 26 H 0.26 15.79 6.36 -92.71 -0.59 15.20 16 27 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 28 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.35 10.13 9.08 -89.69 -0.81 9.31 16 30 H 0.35 13.54 8.07 -89.70 -0.72 12.81 16 Total: -1.00 -66.67 262.04 0.70 -65.97 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: -0.21 Total: 29.60 kcal Atomic # 6 Polarization: -26.61 SS G_CDS: 3.84 Total: -22.77 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -4.94 Total: -113.83 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -0.04 Total: -9.82 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 2.05 Total: 50.85 kcal Total: -66.67 0.70 -65.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261282052.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.246 kcal (2) G-P(sol) polarization free energy of solvation -66.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds