Wall clock time and date at job start Mon Mar 30 2020 02:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31473 * 1 3 3 Si 1.86802 * 119.99905 * 2 1 4 4 H 1.48501 * 109.46887 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47200 * 299.99884 * 3 2 1 6 6 H 1.48494 * 109.47240 * 60.00155 * 3 2 1 7 7 C 1.38881 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00345 * 192.24947 * 7 2 1 9 9 N 1.37196 * 119.99628 * 12.24859 * 7 2 1 10 10 C 1.33570 * 118.19516 * 214.13596 * 9 7 2 11 11 O 1.21583 * 118.75686 * 358.73872 * 10 9 7 12 12 N 1.34114 * 122.52749 * 179.02282 * 10 9 7 13 13 C 1.46121 * 120.66095 * 354.11715 * 12 10 9 14 14 C 1.51699 * 110.90008 * 32.26168 * 13 12 10 15 15 H 1.09001 * 109.93862 * 186.91656 * 14 13 12 16 16 C 1.54186 * 111.44173 * 63.95242 * 14 13 12 17 17 C 1.54487 * 103.76651 * 201.58520 * 16 14 13 18 18 C 1.53947 * 106.59652 * 23.15268 * 17 16 14 19 19 C 1.46180 * 118.21586 * 33.86181 * 9 7 2 20 20 H 1.08998 * 111.46704 * 285.25433 * 19 9 7 21 21 H 0.96996 * 119.99979 * 359.97438 * 1 2 3 22 22 H 0.96998 * 119.66832 * 174.40092 * 12 10 9 23 23 H 1.09003 * 109.18980 * 152.62739 * 13 12 10 24 24 H 1.08998 * 109.19402 * 271.94148 * 13 12 10 25 25 H 1.09002 * 110.56443 * 320.15289 * 16 14 13 26 26 H 1.08995 * 110.56901 * 83.01326 * 16 14 13 27 27 H 1.09006 * 110.03259 * 263.87314 * 17 16 14 28 28 H 1.08998 * 110.07825 * 142.46868 * 17 16 14 29 29 H 1.08993 * 110.06421 * 241.79868 * 18 17 16 30 30 H 1.09005 * 110.10034 * 120.31422 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2487 1.6178 0.0000 4 1 3.7087 1.3464 0.0006 5 1 1.8900 2.3965 -1.2125 6 1 1.8900 2.3964 1.2125 7 6 2.0092 -1.2027 -0.0005 8 1 3.0707 -1.2135 0.1979 9 7 1.3466 -2.3772 -0.2531 10 6 1.7547 -3.4806 0.3793 11 8 2.7067 -3.4053 1.1318 12 7 1.1581 -4.6701 0.2121 13 6 -0.0610 -4.7867 -0.5850 14 6 -0.0689 -3.7729 -1.7134 15 1 -1.0333 -3.7894 -2.2212 16 6 1.0748 -4.0342 -2.7139 17 6 1.2652 -2.6726 -3.4185 18 6 0.7120 -1.6012 -2.4614 19 6 0.2289 -2.3515 -1.1949 20 1 -0.6554 -1.8934 -0.7521 21 1 -0.4850 0.8400 0.0004 22 1 1.5374 -5.4601 0.6277 23 1 -0.1198 -5.7909 -1.0049 24 1 -0.9259 -4.6153 0.0559 25 1 1.9847 -4.3239 -2.1882 26 1 0.7866 -4.8007 -3.4333 27 1 0.7107 -2.6571 -4.3569 28 1 2.3236 -2.4939 -3.6076 29 1 -0.1230 -1.0785 -2.9277 30 1 1.4972 -0.8920 -2.1991 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261312740.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:01 Heat of formation + Delta-G solvation = -20.911961 kcal Electronic energy + Delta-G solvation = -14990.456269 eV Core-core repulsion = 12592.714917 eV Total energy + Delta-G solvation = -2397.741352 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.97440 -36.69175 -34.69856 -33.04858 -31.02278 -28.81824 -27.10538 -25.36736 -23.38615 -20.89037 -19.62827 -18.39559 -16.47365 -16.13707 -15.91183 -15.11423 -14.40437 -13.95522 -13.71975 -13.34403 -12.98738 -12.40106 -12.33529 -11.38238 -11.05253 -11.01714 -10.63573 -10.48410 -10.33157 -10.10381 -10.02218 -9.90064 -9.71860 -8.80537 -8.59246 -8.07817 -7.33891 -6.09705 -3.79406 3.24550 3.33583 3.39878 4.08393 4.43693 4.51092 5.03809 5.17914 5.31634 5.44783 5.53657 5.74646 5.91096 5.99203 6.06133 6.26954 6.34045 6.45031 6.55791 6.56824 6.79818 6.95958 7.34369 7.42219 7.57898 7.74847 8.11493 8.53970 8.87472 9.40356 9.73001 10.30991 10.91339 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.034728 B = 0.015071 C = 0.012483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.077752 B = 1857.462608 C = 2242.582825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.032 3.968 3 Si 0.916 3.084 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.286 4.286 8 H 0.090 0.910 9 N -0.457 5.457 10 C 0.670 3.330 11 O -0.630 6.630 12 N -0.754 5.754 13 C 0.129 3.871 14 C -0.131 4.131 15 H 0.087 0.913 16 C -0.112 4.112 17 C -0.121 4.121 18 C -0.118 4.118 19 C 0.164 3.836 20 H 0.106 0.894 21 H 0.262 0.738 22 H 0.398 0.602 23 H 0.063 0.937 24 H 0.049 0.951 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.116 -5.643 -6.632 9.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.170 4.170 3 Si 0.743 3.257 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.415 4.415 8 H 0.108 0.892 9 N -0.181 5.181 10 C 0.372 3.628 11 O -0.513 6.513 12 N -0.414 5.414 13 C 0.004 3.996 14 C -0.151 4.151 15 H 0.105 0.895 16 C -0.149 4.149 17 C -0.159 4.159 18 C -0.156 4.156 19 C 0.060 3.940 20 H 0.124 0.876 21 H 0.073 0.927 22 H 0.233 0.767 23 H 0.082 0.918 24 H 0.067 0.933 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.856 -5.257 -6.363 8.734 hybrid contribution 0.243 0.486 0.044 0.545 sum -2.613 -4.771 -6.319 8.338 Atomic orbital electron populations 1.69895 1.05712 1.26704 1.50240 1.25304 0.95365 0.99269 0.97066 0.86016 0.79995 0.82060 0.77615 1.19356 1.20842 1.20935 1.19337 0.93270 0.82195 1.46694 0.89214 1.42366 1.31396 1.06135 1.38219 1.15597 0.84447 0.80976 0.81781 1.90755 1.32248 1.84966 1.43353 1.44844 1.29371 1.09405 1.57736 1.20773 0.88022 0.98443 0.92398 1.22321 0.99485 0.97223 0.96059 0.89493 1.22219 0.98557 0.97028 0.97117 1.22174 1.00420 0.95348 0.97966 1.22469 1.01124 0.97884 0.94149 1.21813 0.92337 0.90877 0.88958 0.87647 0.92732 0.76668 0.91833 0.93257 0.91647 0.92741 0.93158 0.92692 0.93104 0.89181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.78 10.73 55.49 0.60 -23.19 16 2 C 0.03 0.86 3.92 -17.47 -0.07 0.79 16 3 Si 0.92 21.13 29.57 -169.99 -5.03 16.10 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.29 -8.07 7.51 -14.91 -0.11 -8.18 16 8 H 0.09 2.70 7.47 -52.49 -0.39 2.30 16 9 N -0.46 -11.88 2.65 -112.05 -0.30 -12.17 16 10 C 0.67 17.36 7.52 -88.58 -0.67 16.69 16 11 O -0.63 -18.79 16.63 5.29 0.09 -18.70 16 12 N -0.75 -15.13 5.17 -66.68 -0.34 -15.47 16 13 C 0.13 2.13 6.59 -4.91 -0.03 2.10 16 14 C -0.13 -2.29 3.05 -90.03 -0.27 -2.56 16 15 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 16 C -0.11 -1.87 6.02 -25.33 -0.15 -2.03 16 17 C -0.12 -2.12 6.81 -25.46 -0.17 -2.29 16 18 C -0.12 -2.46 5.65 -25.22 -0.14 -2.60 16 19 C 0.16 3.66 2.73 -66.45 -0.18 3.48 16 20 H 0.11 2.60 6.48 -51.93 -0.34 2.27 16 21 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 22 H 0.40 7.07 8.89 -40.82 -0.36 6.70 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.06 1.25 7.14 -51.93 -0.37 0.88 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.09 2.14 5.59 -51.93 -0.29 1.85 16 LS Contribution 236.73 15.07 3.57 3.57 Total: -1.00 -31.51 236.73 -7.07 -38.57 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -3.85 Total: 5.91 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -1.80 Total: 5.39 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: -0.05 Total: -50.83 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: 0.09 Total: -18.70 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -31.51 -7.07 -38.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261312740.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.660 kcal (2) G-P(sol) polarization free energy of solvation -31.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds