Wall clock time and date at job start Mon Mar 30 2020 02:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99822 * 2 1 4 4 H 1.48495 * 109.46936 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47010 * 299.99905 * 3 2 1 6 6 H 1.48491 * 109.47265 * 59.99790 * 3 2 1 7 7 C 1.38811 * 120.00284 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00052 * 192.95346 * 7 2 1 9 9 N 1.36933 * 119.99585 * 12.94833 * 7 2 1 10 10 C 1.46739 * 120.09516 * 205.29493 * 9 7 2 11 11 C 1.52976 * 107.53818 * 233.72056 * 10 9 7 12 12 C 1.52943 * 109.88097 * 299.19235 * 11 10 9 13 13 H 1.09005 * 111.30567 * 289.55428 * 12 11 10 14 14 C 1.52486 * 106.98642 * 167.52145 * 12 11 10 15 15 O 1.21282 * 125.24752 * 83.28946 * 14 12 11 16 16 N 1.34703 * 109.50512 * 263.33123 * 14 12 11 17 17 C 1.47222 * 111.15907 * 357.66041 * 16 14 12 18 18 C 1.53374 * 111.76709 * 55.71386 * 12 11 10 19 19 H 1.09001 * 108.22428 * 198.30538 * 18 12 11 20 20 C 1.45523 * 120.10032 * 25.31989 * 9 7 2 21 21 H 0.97008 * 120.00176 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.84041 * 114.21089 * 10 9 7 23 23 H 1.09001 * 109.83936 * 353.23193 * 10 9 7 24 24 H 1.09001 * 109.40424 * 179.06542 * 11 10 9 25 25 H 1.09003 * 109.33750 * 59.27218 * 11 10 9 26 26 H 0.96996 * 124.41819 * 177.64450 * 16 14 12 27 27 H 1.09003 * 110.46124 * 101.23911 * 17 16 14 28 28 H 1.08996 * 110.46568 * 223.68754 * 17 16 14 29 29 H 1.08999 * 108.44256 * 263.21080 * 20 9 7 30 30 H 1.09003 * 108.44067 * 20.69255 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0697 -1.2139 0.2102 9 7 1.3517 -2.3730 -0.2647 10 6 1.8740 -3.6439 0.2504 11 6 2.0161 -4.5987 -0.9364 12 6 0.6499 -4.8310 -1.5835 13 1 0.0039 -5.4294 -0.9410 14 6 0.9016 -5.5201 -2.9203 15 8 1.0713 -6.7113 -3.0727 16 7 0.9072 -4.6017 -3.9057 17 6 0.6161 -3.2574 -3.3809 18 6 -0.0136 -3.5125 -2.0004 19 1 -1.0785 -3.6967 -2.1423 20 6 0.1321 -2.3608 -1.0585 21 1 -0.4851 0.8401 0.0004 22 1 1.1795 -4.0609 0.9797 23 1 2.8470 -3.4831 0.7146 24 1 2.4189 -5.5502 -0.5894 25 1 2.6950 -4.1640 -1.6701 26 1 1.0807 -4.8002 -4.8392 27 1 1.5354 -2.6805 -3.2797 28 1 -0.0885 -2.7388 -4.0310 29 1 -0.7210 -2.3605 -0.3801 30 1 0.1087 -1.4393 -1.6404 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306157136.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:46 Heat of formation + Delta-G solvation = -15.823490 kcal Electronic energy + Delta-G solvation = -14466.828400 eV Core-core repulsion = 12069.307701 eV Total energy + Delta-G solvation = -2397.520700 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.35624 -37.08848 -35.15529 -32.70925 -30.61960 -30.17180 -26.27158 -25.25792 -22.78180 -21.73981 -19.96672 -18.48863 -17.30716 -16.47709 -15.52973 -15.02300 -14.50891 -13.93634 -13.79466 -13.39964 -13.11080 -12.50475 -12.44405 -12.38078 -11.46475 -11.07760 -11.01123 -10.76776 -10.50532 -10.26890 -10.13962 -9.82676 -9.65862 -9.16689 -8.79826 -8.51582 -6.74960 -5.82325 -3.25765 2.93482 3.33420 3.41988 3.43564 3.66929 4.44545 4.74684 4.96349 5.15501 5.36944 5.48972 5.53053 5.72537 5.86602 5.98046 6.21964 6.28884 6.40469 6.51279 6.59578 6.72644 6.91344 7.07477 7.22676 7.31992 7.62896 7.75938 8.38580 8.56083 9.19711 9.81846 10.33139 11.25414 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.052703 B = 0.009622 C = 0.009107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.152914 B = 2909.323111 C = 3073.741450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.252 4.252 8 H 0.069 0.931 9 N -0.592 5.592 10 C 0.148 3.852 11 C -0.120 4.120 12 C -0.103 4.103 13 H 0.100 0.900 14 C 0.519 3.481 15 O -0.550 6.550 16 N -0.736 5.736 17 C 0.108 3.892 18 C -0.109 4.109 19 H 0.069 0.931 20 C 0.188 3.812 21 H 0.253 0.747 22 H 0.023 0.977 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.401 0.599 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.030 0.970 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.474 -4.522 -4.955 6.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.381 4.381 8 H 0.087 0.913 9 N -0.315 5.315 10 C 0.022 3.978 11 C -0.159 4.159 12 C -0.125 4.125 13 H 0.118 0.882 14 C 0.306 3.694 15 O -0.428 6.428 16 N -0.390 5.390 17 C -0.016 4.016 18 C -0.130 4.130 19 H 0.087 0.913 20 C 0.061 3.939 21 H 0.063 0.937 22 H 0.041 0.959 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.239 0.761 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.048 0.952 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.424 -4.952 -4.913 6.989 hybrid contribution 0.382 0.900 -0.552 1.123 sum 0.806 -4.052 -5.465 6.851 Atomic orbital electron populations 1.70044 1.05118 1.25330 1.54750 1.25047 0.95414 0.98277 1.00912 0.86200 0.79260 0.83908 0.77290 1.20305 1.21617 1.21692 1.19273 0.91627 0.84083 1.43152 0.91348 1.43617 1.28218 1.02028 1.57644 1.20821 0.97825 0.86770 0.92429 1.21855 0.94048 1.00009 1.00032 1.21874 0.99679 0.96755 0.94154 0.88201 1.21618 0.74254 0.85574 0.87925 1.90672 1.51379 1.14786 1.85975 1.46451 1.72620 1.09905 1.10063 1.22279 1.01059 0.82960 0.95270 1.21808 0.99008 0.96742 0.95428 0.91269 1.19485 0.89071 0.93612 0.91697 0.93663 0.95899 0.92199 0.92296 0.91946 0.76133 0.90300 0.90732 0.95157 0.90156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.98 10.86 55.49 0.60 -24.37 16 2 C 0.00 0.04 4.99 -17.43 -0.09 -0.04 16 3 Si 0.90 20.85 29.57 -169.99 -5.03 15.82 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.25 -6.55 9.57 -15.06 -0.14 -6.69 16 8 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 9 N -0.59 -13.92 3.05 -175.91 -0.54 -14.46 16 10 C 0.15 2.96 6.52 -3.92 -0.03 2.93 16 11 C -0.12 -2.11 5.17 -26.77 -0.14 -2.25 16 12 C -0.10 -1.77 3.33 -90.72 -0.30 -2.07 16 13 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 14 C 0.52 9.15 7.52 -10.13 -0.08 9.07 16 15 O -0.55 -11.32 18.03 5.56 0.10 -11.22 16 16 N -0.74 -10.89 6.28 -58.70 -0.37 -11.26 16 17 C 0.11 1.65 6.99 -3.20 -0.02 1.63 16 18 C -0.11 -1.91 2.81 -91.71 -0.26 -2.16 16 19 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 20 C 0.19 4.11 4.40 -6.30 -0.03 4.09 16 21 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 22 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.06 1.17 7.90 -51.93 -0.41 0.76 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.06 1.15 7.91 -51.93 -0.41 0.74 16 26 H 0.40 4.98 8.96 -40.82 -0.37 4.61 16 27 H 0.08 1.31 8.09 -51.93 -0.42 0.89 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.03 0.74 7.91 -51.93 -0.41 0.33 16 30 H 0.08 1.94 6.21 -51.93 -0.32 1.61 16 LS Contribution 244.24 15.07 3.68 3.68 Total: -1.00 -29.50 244.24 -6.63 -36.13 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -4.00 Total: 1.19 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -1.08 Total: 4.49 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: -0.30 Total: -50.09 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.10 Total: -11.22 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -29.50 -6.63 -36.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306157136.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.303 kcal (2) G-P(sol) polarization free energy of solvation -29.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds