Wall clock time and date at job start Mon Mar 30 2020 02:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99822 * 2 1 4 4 H 1.48495 * 109.46936 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47010 * 299.99905 * 3 2 1 6 6 H 1.48491 * 109.47265 * 59.99790 * 3 2 1 7 7 C 1.38811 * 120.00284 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00052 * 192.95346 * 7 2 1 9 9 N 1.36933 * 119.99585 * 12.94833 * 7 2 1 10 10 C 1.46739 * 120.09516 * 205.29493 * 9 7 2 11 11 C 1.52976 * 107.53818 * 233.72056 * 10 9 7 12 12 C 1.52943 * 109.88097 * 299.19235 * 11 10 9 13 13 H 1.09005 * 111.30567 * 289.55428 * 12 11 10 14 14 C 1.52486 * 106.98642 * 167.52145 * 12 11 10 15 15 O 1.21282 * 125.24752 * 83.28946 * 14 12 11 16 16 N 1.34703 * 109.50512 * 263.33123 * 14 12 11 17 17 C 1.47222 * 111.15907 * 357.66041 * 16 14 12 18 18 C 1.53374 * 111.76709 * 55.71386 * 12 11 10 19 19 H 1.09001 * 108.22428 * 198.30538 * 18 12 11 20 20 C 1.45523 * 120.10032 * 25.31989 * 9 7 2 21 21 H 0.97008 * 120.00176 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.84041 * 114.21089 * 10 9 7 23 23 H 1.09001 * 109.83936 * 353.23193 * 10 9 7 24 24 H 1.09001 * 109.40424 * 179.06542 * 11 10 9 25 25 H 1.09003 * 109.33750 * 59.27218 * 11 10 9 26 26 H 0.96996 * 124.41819 * 177.64450 * 16 14 12 27 27 H 1.09003 * 110.46124 * 101.23911 * 17 16 14 28 28 H 1.08996 * 110.46568 * 223.68754 * 17 16 14 29 29 H 1.08999 * 108.44256 * 263.21080 * 20 9 7 30 30 H 1.09003 * 108.44067 * 20.69255 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0697 -1.2139 0.2102 9 7 1.3517 -2.3730 -0.2647 10 6 1.8740 -3.6439 0.2504 11 6 2.0161 -4.5987 -0.9364 12 6 0.6499 -4.8310 -1.5835 13 1 0.0039 -5.4294 -0.9410 14 6 0.9016 -5.5201 -2.9203 15 8 1.0713 -6.7113 -3.0727 16 7 0.9072 -4.6017 -3.9057 17 6 0.6161 -3.2574 -3.3809 18 6 -0.0136 -3.5125 -2.0004 19 1 -1.0785 -3.6967 -2.1423 20 6 0.1321 -2.3608 -1.0585 21 1 -0.4851 0.8401 0.0004 22 1 1.1795 -4.0609 0.9797 23 1 2.8470 -3.4831 0.7146 24 1 2.4189 -5.5502 -0.5894 25 1 2.6950 -4.1640 -1.6701 26 1 1.0807 -4.8002 -4.8392 27 1 1.5354 -2.6805 -3.2797 28 1 -0.0885 -2.7388 -4.0310 29 1 -0.7210 -2.3605 -0.3801 30 1 0.1087 -1.4393 -1.6404 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306157136.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:45 Heat of formation + Delta-G solvation = -36.472681 kcal Electronic energy + Delta-G solvation = -14467.723816 eV Core-core repulsion = 12069.307701 eV Total energy + Delta-G solvation = -2398.416116 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.77081 -38.67195 -36.71798 -34.43190 -32.13705 -31.94171 -27.86096 -26.90391 -24.46611 -23.32971 -21.34226 -20.09920 -18.94951 -18.00784 -17.12097 -16.54660 -16.18465 -15.54246 -15.41440 -14.99961 -14.63347 -14.10388 -14.00605 -13.87485 -13.10098 -12.84618 -12.62649 -12.53099 -12.18698 -11.97037 -11.91724 -11.41830 -11.26868 -10.69441 -10.48945 -10.07935 -8.66857 -7.81478 -5.27183 1.49992 1.53295 1.54040 1.62217 2.40817 2.54885 3.27846 3.42887 3.55699 3.68579 3.87759 4.11584 4.35893 4.46883 4.64036 4.79438 4.83086 4.95291 5.03725 5.08486 5.16660 5.30845 5.53202 5.69249 5.75496 5.86439 6.00867 6.42522 7.22954 7.25642 7.94274 8.38816 9.24088 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.052703 B = 0.009622 C = 0.009107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.152914 B = 2909.323111 C = 3073.741450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.047 4.047 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.296 1.296 7 C -0.260 4.260 8 H 0.069 0.931 9 N -0.608 5.608 10 C 0.145 3.855 11 C -0.108 4.108 12 C -0.102 4.102 13 H 0.107 0.893 14 C 0.522 3.478 15 O -0.580 6.580 16 N -0.718 5.718 17 C 0.117 3.883 18 C -0.108 4.108 19 H 0.086 0.914 20 C 0.204 3.796 21 H 0.249 0.751 22 H 0.024 0.976 23 H 0.062 0.938 24 H 0.076 0.924 25 H 0.055 0.945 26 H 0.417 0.583 27 H 0.067 0.933 28 H 0.103 0.897 29 H -0.003 1.003 30 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.974 -4.869 -5.874 7.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.242 4.242 3 Si 0.793 3.207 4 H -0.194 1.194 5 H -0.216 1.216 6 H -0.223 1.223 7 C -0.390 4.390 8 H 0.086 0.914 9 N -0.332 5.332 10 C 0.020 3.980 11 C -0.147 4.147 12 C -0.124 4.124 13 H 0.126 0.874 14 C 0.309 3.691 15 O -0.460 6.460 16 N -0.372 5.372 17 C -0.007 4.007 18 C -0.128 4.128 19 H 0.104 0.896 20 C 0.077 3.923 21 H 0.059 0.941 22 H 0.042 0.958 23 H 0.080 0.920 24 H 0.095 0.905 25 H 0.074 0.926 26 H 0.257 0.743 27 H 0.085 0.915 28 H 0.121 0.879 29 H 0.015 0.985 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.941 -5.308 -5.858 7.961 hybrid contribution 0.234 0.996 -0.220 1.046 sum 1.176 -4.312 -6.079 7.545 Atomic orbital electron populations 1.70195 1.06299 1.25588 1.56073 1.25710 0.96124 1.01023 1.01341 0.85255 0.78535 0.80254 0.76685 1.19374 1.21595 1.22327 1.19557 0.91881 0.85222 1.42310 0.91364 1.43874 1.28409 1.02581 1.58310 1.20933 0.97722 0.85895 0.93470 1.21691 0.94331 0.99975 0.98736 1.21878 0.99478 0.96560 0.94499 0.87446 1.21523 0.74043 0.85265 0.88290 1.90668 1.53015 1.16009 1.86332 1.46300 1.71287 1.09075 1.10529 1.22177 1.01021 0.82969 0.94511 1.21592 1.00448 0.95153 0.95592 0.89590 1.19178 0.87362 0.94460 0.91258 0.94136 0.95783 0.91968 0.90535 0.92588 0.74346 0.91480 0.87890 0.98474 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.16 10.86 21.65 0.24 -51.93 16 2 C -0.05 -2.47 4.99 84.86 0.42 -2.04 16 3 Si 0.96 42.86 29.57 68.60 2.03 44.89 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 5 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.30 -13.37 7.11 99.48 0.71 -12.66 16 7 C -0.26 -13.46 9.57 84.03 0.80 -12.66 16 8 H 0.07 3.47 7.83 -2.91 -0.02 3.45 16 9 N -0.61 -28.50 3.05 -710.46 -2.16 -30.66 16 10 C 0.15 5.68 6.52 86.33 0.56 6.24 16 11 C -0.11 -3.61 5.17 30.57 0.16 -3.46 16 12 C -0.10 -3.32 3.33 -10.86 -0.04 -3.36 16 13 H 0.11 3.34 8.14 -2.38 -0.02 3.32 16 14 C 0.52 17.10 7.52 88.24 0.66 17.76 16 15 O -0.58 -22.62 18.03 -3.04 -0.05 -22.68 16 16 N -0.72 -19.15 6.28 -458.05 -2.88 -22.03 16 17 C 0.12 3.28 6.99 86.53 0.60 3.88 16 18 C -0.11 -3.58 2.81 -11.50 -0.03 -3.61 16 19 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 20 C 0.20 8.93 4.40 85.44 0.38 9.31 16 21 H 0.25 13.53 8.31 -92.70 -0.77 12.76 16 22 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.06 2.37 7.90 -2.39 -0.02 2.35 16 24 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.06 1.95 7.91 -2.39 -0.02 1.93 16 26 H 0.42 8.99 8.96 -92.71 -0.83 8.16 16 27 H 0.07 2.10 8.09 -2.39 -0.02 2.08 16 28 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.00 -0.13 7.91 -2.39 -0.02 -0.15 16 30 H 0.06 2.69 6.21 -2.39 -0.01 2.68 16 Total: -1.00 -62.08 244.24 1.00 -61.07 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 0.31 Total: 9.26 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: 3.52 Total: 12.07 kcal Atomic # 7 Polarization: -99.81 SS G_CDS: -4.81 Total: -104.62 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.05 Total: -22.68 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -62.08 1.00 -61.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306157136.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.601 kcal (2) G-P(sol) polarization free energy of solvation -62.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds