Wall clock time and date at job start Mon Mar 30 2020 02:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86799 * 120.00150 * 2 1 4 4 H 1.48502 * 109.46924 * 269.99739 * 3 2 1 5 5 H 1.48502 * 109.47295 * 29.99243 * 3 2 1 6 6 H 1.48493 * 109.47690 * 149.99699 * 3 2 1 7 7 C 1.38946 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99950 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00327 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00169 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00135 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99842 * 179.97438 * 10 9 7 13 13 H 1.09002 * 109.81647 * 300.53153 * 12 10 9 14 14 C 1.53027 * 109.64296 * 61.05926 * 12 10 9 15 15 C 1.50069 * 110.14888 * 169.11846 * 14 12 10 16 16 C 1.29448 * 124.07328 * 342.86902 * 15 14 12 17 17 C 1.50066 * 124.07478 * 0.46992 * 16 15 14 18 18 H 1.09002 * 109.24168 * 222.72771 * 17 16 15 19 19 N 1.46906 * 109.35850 * 103.07700 * 17 16 15 20 20 C 1.53018 * 110.15025 * 342.86691 * 17 16 15 21 21 H 0.96996 * 119.99954 * 0.02562 * 1 2 3 22 22 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 23 23 H 1.08996 * 109.35624 * 289.33095 * 14 12 10 24 24 H 1.09000 * 109.35606 * 48.91149 * 14 12 10 25 25 H 1.07999 * 117.96043 * 162.89112 * 15 14 12 26 26 H 1.07999 * 117.95640 * 180.48855 * 16 15 14 27 27 H 1.00902 * 110.99567 * 59.30291 * 19 17 16 28 28 H 1.00901 * 111.00013 * 183.26143 * 19 17 16 29 29 H 1.08996 * 109.64193 * 169.12240 * 20 17 16 30 30 H 1.08996 * 109.64125 * 289.75235 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4403 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0011 13 1 0.6082 -4.9223 0.8847 14 6 0.3821 -4.9600 -1.2598 15 6 -0.1639 -6.3500 -1.4070 16 6 0.3047 -7.3831 -0.7834 17 6 1.4530 -7.3333 0.1815 18 1 2.1130 -8.1813 -0.0015 19 7 0.9379 -7.4050 1.5555 20 6 2.2371 -6.0318 0.0011 21 1 -0.4850 0.8400 -0.0004 22 1 0.3534 -2.3906 0.0005 23 1 -0.4442 -4.2529 -1.1879 24 1 0.9890 -4.7159 -2.1317 25 1 -0.9995 -6.4977 -2.0750 26 1 -0.1594 -8.3404 -0.9694 27 1 0.4154 -8.2557 1.7018 28 1 1.6861 -7.3200 2.2271 29 1 2.9433 -5.9126 0.8227 30 1 2.7743 -6.0562 -0.9471 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714143304.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:02 Heat of formation + Delta-G solvation = -58.191799 kcal Electronic energy + Delta-G solvation = -13841.575039 eV Core-core repulsion = 11442.217112 eV Total energy + Delta-G solvation = -2399.357927 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.83506 -38.78071 -35.99832 -34.36077 -33.20813 -32.03527 -29.11971 -27.13884 -24.38812 -23.18957 -20.89566 -19.91141 -18.72012 -17.84352 -16.99871 -16.35991 -16.13092 -15.87833 -15.54187 -15.42207 -14.63714 -14.13398 -13.69599 -13.57276 -13.34058 -13.21666 -12.91484 -12.45491 -12.14523 -11.97173 -11.72722 -11.52311 -11.29147 -10.24240 -10.08980 -10.02152 -9.46543 -8.47307 -5.96896 1.37085 1.40410 1.40701 1.54099 2.04144 2.29747 3.18768 3.20935 3.73135 3.83174 3.89279 4.14147 4.32846 4.38146 4.49245 4.54559 4.76935 4.84392 4.90154 5.07042 5.25759 5.35693 5.40075 5.75957 5.99178 6.06417 6.29620 6.57799 6.71542 7.10532 7.55066 8.10069 8.70143 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.057382 B = 0.007472 C = 0.007078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.838685 B = 3746.599905 C = 3955.173449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.012 4.012 3 Si 0.995 3.005 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.340 4.340 8 H 0.078 0.922 9 N -0.568 5.568 10 C 0.440 3.560 11 O -0.638 6.638 12 C -0.078 4.078 13 H 0.097 0.903 14 C -0.082 4.082 15 C -0.135 4.135 16 C -0.153 4.153 17 C 0.126 3.874 18 H 0.059 0.941 19 N -0.847 5.847 20 C -0.085 4.085 21 H 0.279 0.721 22 H 0.396 0.604 23 H 0.074 0.926 24 H 0.062 0.938 25 H 0.128 0.872 26 H 0.129 0.871 27 H 0.352 0.648 28 H 0.347 0.653 29 H 0.054 0.946 30 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.921 -12.961 -0.662 13.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.818 3.182 4 H -0.195 1.195 5 H -0.193 1.193 6 H -0.198 1.198 7 C -0.469 4.469 8 H 0.096 0.904 9 N -0.204 5.204 10 C 0.228 3.772 11 O -0.527 6.527 12 C -0.100 4.100 13 H 0.116 0.884 14 C -0.120 4.120 15 C -0.154 4.154 16 C -0.172 4.172 17 C 0.015 3.985 18 H 0.076 0.924 19 N -0.380 5.380 20 C -0.124 4.124 21 H 0.088 0.912 22 H 0.230 0.770 23 H 0.092 0.908 24 H 0.081 0.919 25 H 0.146 0.854 26 H 0.147 0.853 27 H 0.167 0.833 28 H 0.160 0.840 29 H 0.073 0.927 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.677 -12.144 -0.840 12.464 hybrid contribution 0.562 0.236 0.100 0.618 sum -2.115 -11.909 -0.740 12.118 Atomic orbital electron populations 1.69681 1.06884 1.29387 1.50030 1.26081 0.96569 1.02480 0.96081 0.84909 0.77855 0.76703 0.78735 1.19479 1.19348 1.19797 1.19723 0.92742 0.84211 1.50253 0.90379 1.41976 1.09278 1.04746 1.64369 1.21031 0.88002 0.86398 0.81761 1.90452 1.16126 1.88316 1.57786 1.21043 0.97452 0.90928 1.00566 0.88446 1.20414 0.98528 0.96956 0.96090 1.22108 0.99835 0.92932 1.00520 1.22085 0.98026 0.99164 0.97901 1.20128 0.93767 0.95518 0.89038 0.92376 1.58630 1.31074 1.45486 1.02834 1.21357 0.96335 0.93171 1.01509 0.91197 0.77039 0.90796 0.91936 0.85406 0.85311 0.83337 0.83980 0.92736 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.82 13.05 21.66 0.28 -50.54 16 2 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 3 Si 0.99 43.78 29.55 68.60 2.03 45.81 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.34 -20.02 9.68 84.04 0.81 -19.20 16 8 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 9 N -0.57 -30.75 5.20 -306.99 -1.60 -32.34 16 10 C 0.44 22.34 7.08 87.66 0.62 22.96 16 11 O -0.64 -37.18 15.48 -3.07 -0.05 -37.22 16 12 C -0.08 -3.00 2.56 -11.40 -0.03 -3.03 16 13 H 0.10 3.70 7.71 -2.39 -0.02 3.68 16 14 C -0.08 -2.72 5.29 29.66 0.16 -2.57 16 15 C -0.13 -3.42 9.80 27.03 0.27 -3.15 16 16 C -0.15 -3.48 9.33 27.03 0.25 -3.23 16 17 C 0.13 3.07 3.56 43.98 0.16 3.23 16 18 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 19 N -0.85 -18.61 8.76 -172.60 -1.51 -20.12 16 20 C -0.09 -2.87 4.28 30.73 0.13 -2.74 16 21 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 22 H 0.40 20.53 7.64 -92.71 -0.71 19.82 16 23 H 0.07 2.46 7.95 -2.39 -0.02 2.44 16 24 H 0.06 2.21 8.10 -2.39 -0.02 2.19 16 25 H 0.13 2.61 8.06 -2.91 -0.02 2.58 16 26 H 0.13 2.17 8.06 -2.91 -0.02 2.14 16 27 H 0.35 5.81 9.02 -89.69 -0.81 5.00 16 28 H 0.35 7.20 8.95 -89.69 -0.80 6.40 16 29 H 0.05 1.99 7.85 -2.39 -0.02 1.97 16 30 H 0.06 2.02 8.12 -2.39 -0.02 2.00 16 Total: -1.00 -67.88 255.53 0.84 -67.04 By element: Atomic # 1 Polarization: 36.46 SS G_CDS: -1.15 Total: 35.31 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: 2.83 Total: -7.93 kcal Atomic # 7 Polarization: -100.18 SS G_CDS: -2.83 Total: -103.01 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -0.05 Total: -37.22 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -67.88 0.84 -67.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714143304.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.851 kcal (2) G-P(sol) polarization free energy of solvation -67.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds