Wall clock time and date at job start Mon Mar 30 2020 02:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46892 * 109.47292 * 2 1 4 4 C 1.46899 * 111.00256 * 193.95240 * 3 2 1 5 5 C 1.50702 * 109.46896 * 66.04769 * 4 3 2 6 6 H 1.07996 * 120.00012 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00041 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99833 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00033 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.46988 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47178 * 120.00101 * 9 7 5 12 12 H 1.48503 * 109.46828 * 240.00131 * 9 7 5 13 13 C 1.40969 * 111.00046 * 70.00064 * 3 2 1 14 14 C 1.35560 * 126.08818 * 63.93040 * 13 3 2 15 15 N 1.36076 * 107.65158 * 180.26648 * 14 13 3 16 16 H 0.97000 * 126.01440 * 179.77229 * 15 14 13 17 17 N 1.40058 * 107.96169 * 359.63646 * 15 14 13 18 18 C 1.31181 * 108.32881 * 0.36718 * 17 15 14 19 19 N 1.40145 * 125.88756 * 179.77690 * 18 17 15 20 20 H 1.08999 * 109.46917 * 60.00148 * 1 2 3 21 21 H 1.09005 * 109.47425 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47027 * 299.99642 * 1 2 3 23 23 H 1.09000 * 109.47305 * 239.99947 * 2 1 3 24 24 H 1.09006 * 109.47141 * 120.00163 * 2 1 3 25 25 H 1.09003 * 109.47175 * 186.04587 * 4 3 2 26 26 H 1.09003 * 109.47353 * 306.04838 * 4 3 2 27 27 H 0.97003 * 120.00289 * 179.97438 * 8 7 5 28 28 H 1.08002 * 126.16921 * 359.97438 * 14 13 3 29 29 H 0.96992 * 120.00003 * 180.02562 * 19 18 17 30 30 H 0.96999 * 119.99358 * 359.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4500 1.4376 -0.3307 5 6 3.6535 0.9854 -1.7538 6 1 2.8052 0.6890 -2.3527 7 6 4.9228 0.9501 -2.2911 8 7 5.9558 1.3116 -1.5618 9 14 5.1752 0.3889 -4.0548 10 1 3.8631 0.0382 -4.6552 11 1 5.8015 1.4842 -4.8380 12 1 6.0617 -0.8023 -4.0731 13 6 1.7637 2.0112 1.2367 14 6 2.2851 1.6537 2.4359 15 7 1.7843 2.5034 3.3734 16 1 1.9805 2.4845 4.3231 17 7 0.9381 3.4118 2.7250 18 6 0.9206 3.1189 1.4464 19 7 0.1886 3.7925 0.4592 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 3.8113 2.4599 -0.2191 26 1 4.0028 0.7814 0.3417 27 1 6.8489 1.2864 -1.9397 28 1 2.9702 0.8384 2.6154 29 1 0.2386 3.5017 -0.4647 30 1 -0.3686 4.5490 0.7002 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042450693.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:20 Heat of formation + Delta-G solvation = 79.418629 kcal Electronic energy + Delta-G solvation = -13992.740781 eV Core-core repulsion = 11631.642841 eV Total energy + Delta-G solvation = -2361.097940 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.52973 -36.37727 -33.88650 -32.59456 -30.18670 -29.03304 -28.37336 -25.67195 -22.36552 -22.11984 -20.38803 -19.08393 -17.43350 -16.12583 -15.72906 -14.98971 -14.84214 -14.31307 -14.10253 -13.43227 -13.35884 -12.57752 -12.18970 -12.01316 -11.21688 -11.03043 -10.77251 -10.64117 -10.51594 -10.41451 -10.03410 -9.90128 -9.16639 -8.43784 -8.08426 -7.32155 -7.25245 -6.01422 -4.02727 2.43530 3.25665 3.31503 3.39177 3.43567 3.56275 4.39573 4.47078 5.10010 5.34190 5.45294 5.78542 5.89035 6.00972 6.12532 6.29619 6.45966 6.72325 6.80067 6.86744 7.37680 7.40096 7.66200 7.81163 7.94048 8.05327 8.21981 8.24026 8.64235 8.76843 9.05598 9.61376 11.09244 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.038767 B = 0.008895 C = 0.008403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.096372 B = 3147.090347 C = 3331.510217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.063 3.937 3 N -0.470 5.470 4 C 0.201 3.799 5 C -0.507 4.507 6 H 0.065 0.935 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.286 1.286 13 C -0.063 4.063 14 C 0.040 3.960 15 N -0.491 5.491 16 H 0.435 0.565 17 N -0.366 5.366 18 C 0.358 3.642 19 N -0.839 5.839 20 H 0.056 0.944 21 H 0.045 0.955 22 H 0.043 0.957 23 H 0.085 0.915 24 H 0.017 0.983 25 H 0.029 0.971 26 H -0.009 1.009 27 H 0.260 0.740 28 H 0.167 0.833 29 H 0.416 0.584 30 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.599 -0.227 5.813 10.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.064 4.064 3 N -0.192 5.192 4 C 0.076 3.924 5 C -0.545 4.545 6 H 0.083 0.917 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.724 3.276 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.172 4.172 14 C -0.107 4.107 15 N -0.202 5.202 16 H 0.278 0.722 17 N -0.201 5.201 18 C 0.096 3.904 19 N -0.391 5.391 20 H 0.075 0.925 21 H 0.064 0.936 22 H 0.062 0.938 23 H 0.104 0.896 24 H 0.036 0.964 25 H 0.048 0.952 26 H 0.008 0.992 27 H 0.070 0.930 28 H 0.184 0.816 29 H 0.247 0.753 30 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -9.017 0.719 6.323 11.036 hybrid contribution 1.132 -1.099 -0.668 1.714 sum -7.884 -0.380 5.655 9.710 Atomic orbital electron populations 1.21725 0.96654 0.99882 1.01527 1.22013 0.94106 0.89612 1.00704 1.59756 1.21314 1.15146 1.22986 1.19751 0.79889 0.96932 0.95783 1.21221 0.92624 1.43437 0.97248 0.91693 1.24986 0.96012 0.95674 0.97940 1.69975 0.98827 1.48480 1.36465 0.86465 0.78162 0.78185 0.84744 1.19626 1.21085 1.21190 1.18763 1.06218 1.01611 0.90573 1.22956 1.00256 0.97231 0.90305 1.45500 1.39688 1.26161 1.08858 0.72238 1.77158 1.20604 1.17504 1.04878 1.19240 0.91768 0.91172 0.88245 1.41322 1.52885 1.36950 1.07898 0.92486 0.93643 0.93752 0.89648 0.96433 0.95245 0.99158 0.93035 0.81567 0.75318 0.77914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.95 37.16 0.37 -1.90 16 2 C 0.06 1.21 5.49 -3.83 -0.02 1.19 16 3 N -0.47 -10.02 4.60 -172.47 -0.79 -10.81 16 4 C 0.20 5.17 4.45 -4.98 -0.02 5.15 16 5 C -0.51 -13.92 8.31 -34.44 -0.29 -14.20 16 6 H 0.06 1.76 7.23 -52.49 -0.38 1.38 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.48 13.29 55.43 0.74 -25.75 16 9 Si 0.90 21.37 29.54 -169.99 -5.02 16.34 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 C -0.06 -1.24 4.01 -83.65 -0.34 -1.57 16 14 C 0.04 0.70 11.11 -16.63 -0.18 0.51 16 15 N -0.49 -7.64 7.40 30.70 0.23 -7.42 16 16 H 0.43 5.03 8.96 -182.63 -1.64 3.40 16 17 N -0.37 -6.58 12.71 31.51 0.40 -6.18 16 18 C 0.36 6.63 8.46 -154.29 -1.31 5.32 16 19 N -0.84 -12.92 9.16 31.48 0.29 -12.64 16 20 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 21 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 22 H 0.04 0.73 7.52 -51.93 -0.39 0.34 16 23 H 0.09 1.77 6.60 -51.93 -0.34 1.43 16 24 H 0.02 0.33 7.63 -51.93 -0.40 -0.07 16 25 H 0.03 0.84 8.06 -51.93 -0.42 0.42 16 26 H -0.01 -0.26 8.09 -51.93 -0.42 -0.68 16 27 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.17 2.60 8.06 -52.49 -0.42 2.17 16 29 H 0.42 6.35 8.96 -40.82 -0.37 5.98 16 30 H 0.39 5.02 8.96 -40.82 -0.37 4.65 16 LS Contribution 259.92 15.07 3.92 3.92 Total: -1.00 -31.33 259.92 -7.25 -38.58 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -5.12 Total: 8.01 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -1.88 Total: -4.06 kcal Atomic # 7 Polarization: -63.65 SS G_CDS: 0.86 Total: -62.79 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.33 -7.25 -38.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042450693.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.996 kcal (2) G-P(sol) polarization free energy of solvation -31.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds