Wall clock time and date at job start Mon Mar 30 2020 02:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46892 * 109.47292 * 2 1 4 4 C 1.46899 * 111.00256 * 193.95240 * 3 2 1 5 5 C 1.50702 * 109.46896 * 66.04769 * 4 3 2 6 6 H 1.07996 * 120.00012 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00041 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99833 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00033 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.46988 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47178 * 120.00101 * 9 7 5 12 12 H 1.48503 * 109.46828 * 240.00131 * 9 7 5 13 13 C 1.40969 * 111.00046 * 70.00064 * 3 2 1 14 14 C 1.35560 * 126.08818 * 63.93040 * 13 3 2 15 15 N 1.36076 * 107.65158 * 180.26648 * 14 13 3 16 16 H 0.97000 * 126.01440 * 179.77229 * 15 14 13 17 17 N 1.40058 * 107.96169 * 359.63646 * 15 14 13 18 18 C 1.31181 * 108.32881 * 0.36718 * 17 15 14 19 19 N 1.40145 * 125.88756 * 179.77690 * 18 17 15 20 20 H 1.08999 * 109.46917 * 60.00148 * 1 2 3 21 21 H 1.09005 * 109.47425 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47027 * 299.99642 * 1 2 3 23 23 H 1.09000 * 109.47305 * 239.99947 * 2 1 3 24 24 H 1.09006 * 109.47141 * 120.00163 * 2 1 3 25 25 H 1.09003 * 109.47175 * 186.04587 * 4 3 2 26 26 H 1.09003 * 109.47353 * 306.04838 * 4 3 2 27 27 H 0.97003 * 120.00289 * 179.97438 * 8 7 5 28 28 H 1.08002 * 126.16921 * 359.97438 * 14 13 3 29 29 H 0.96992 * 120.00003 * 180.02562 * 19 18 17 30 30 H 0.96999 * 119.99358 * 359.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4500 1.4376 -0.3307 5 6 3.6535 0.9854 -1.7538 6 1 2.8052 0.6890 -2.3527 7 6 4.9228 0.9501 -2.2911 8 7 5.9558 1.3116 -1.5618 9 14 5.1752 0.3889 -4.0548 10 1 3.8631 0.0382 -4.6552 11 1 5.8015 1.4842 -4.8380 12 1 6.0617 -0.8023 -4.0731 13 6 1.7637 2.0112 1.2367 14 6 2.2851 1.6537 2.4359 15 7 1.7843 2.5034 3.3734 16 1 1.9805 2.4845 4.3231 17 7 0.9381 3.4118 2.7250 18 6 0.9206 3.1189 1.4464 19 7 0.1886 3.7925 0.4592 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 3.8113 2.4599 -0.2191 26 1 4.0028 0.7814 0.3417 27 1 6.8489 1.2864 -1.9397 28 1 2.9702 0.8384 2.6154 29 1 0.2386 3.5017 -0.4647 30 1 -0.3686 4.5490 0.7002 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042450693.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:19 Heat of formation + Delta-G solvation = 56.048025 kcal Electronic energy + Delta-G solvation = -13993.754207 eV Core-core repulsion = 11631.642841 eV Total energy + Delta-G solvation = -2362.111366 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.93645 -38.03194 -35.20621 -34.66680 -31.68720 -30.39372 -30.09771 -27.48617 -24.19341 -23.67143 -21.82683 -20.54747 -18.98907 -18.12027 -17.02134 -16.80539 -16.15819 -15.95063 -15.73714 -14.97540 -14.92313 -14.20496 -13.93017 -13.77029 -12.87387 -12.65795 -12.64240 -12.29102 -11.97394 -11.91058 -11.87410 -11.54868 -11.10975 -10.58033 -9.50838 -9.04205 -8.60660 -8.14869 -6.24631 1.03434 1.44380 1.45539 1.58674 2.00485 2.10318 2.44985 3.09865 3.18051 3.53138 4.11159 4.36579 4.51390 4.58326 4.79651 4.87609 5.03730 5.20466 5.23054 5.32659 5.45974 5.53716 5.73737 6.14361 6.39263 6.41744 6.57556 6.82040 6.92743 7.01737 7.42578 7.45193 8.95751 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.038767 B = 0.008895 C = 0.008403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.096372 B = 3147.090347 C = 3331.510217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.062 3.938 3 N -0.467 5.467 4 C 0.220 3.780 5 C -0.517 4.517 6 H 0.067 0.933 7 C 0.001 3.999 8 N -0.935 5.935 9 Si 0.967 3.033 10 H -0.261 1.261 11 H -0.282 1.282 12 H -0.280 1.280 13 C -0.102 4.102 14 C 0.050 3.950 15 N -0.472 5.472 16 H 0.453 0.547 17 N -0.377 5.377 18 C 0.349 3.651 19 N -0.829 5.829 20 H 0.056 0.944 21 H 0.070 0.930 22 H 0.041 0.959 23 H 0.066 0.934 24 H 0.021 0.979 25 H -0.008 1.008 26 H -0.032 1.032 27 H 0.262 0.738 28 H 0.182 0.818 29 H 0.416 0.584 30 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.585 -0.735 5.612 11.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.065 4.065 3 N -0.189 5.189 4 C 0.095 3.905 5 C -0.556 4.556 6 H 0.085 0.915 7 C -0.197 4.197 8 N -0.576 5.576 9 Si 0.792 3.208 10 H -0.184 1.184 11 H -0.208 1.208 12 H -0.206 1.206 13 C -0.211 4.211 14 C -0.099 4.099 15 N -0.184 5.184 16 H 0.300 0.700 17 N -0.213 5.213 18 C 0.086 3.914 19 N -0.382 5.382 20 H 0.075 0.925 21 H 0.089 0.911 22 H 0.060 0.940 23 H 0.085 0.915 24 H 0.039 0.961 25 H 0.010 0.990 26 H -0.015 1.015 27 H 0.071 0.929 28 H 0.199 0.801 29 H 0.247 0.753 30 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -10.045 0.231 6.155 11.783 hybrid contribution 1.428 -0.926 -0.506 1.776 sum -8.617 -0.694 5.649 10.327 Atomic orbital electron populations 1.21587 0.93909 1.01465 1.01328 1.22054 0.96246 0.88318 0.99921 1.59585 1.18086 1.16499 1.24701 1.19337 0.82530 0.93811 0.94869 1.21519 0.92851 1.43151 0.98060 0.91477 1.25887 0.95713 0.95665 1.02390 1.70103 0.99340 1.49630 1.38538 0.85361 0.78453 0.77690 0.79270 1.18434 1.20848 1.20595 1.18908 1.08515 1.03091 0.90542 1.23127 0.99470 0.97253 0.90065 1.45536 1.38372 1.24921 1.09615 0.70039 1.77128 1.21340 1.18159 1.04716 1.19421 0.92030 0.91072 0.88843 1.41305 1.52457 1.37025 1.07421 0.92512 0.91136 0.94009 0.91509 0.96069 0.99030 1.01464 0.92881 0.80115 0.75280 0.76404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.82 9.95 71.98 0.72 -3.10 16 2 C 0.06 2.34 5.49 86.30 0.47 2.81 16 3 N -0.47 -19.96 4.60 -699.58 -3.22 -23.18 16 4 C 0.22 11.63 4.45 85.56 0.38 12.01 16 5 C -0.52 -28.70 8.31 25.60 0.21 -28.49 16 6 H 0.07 3.62 7.23 -2.91 -0.02 3.60 16 7 C 0.00 0.07 5.46 84.66 0.46 0.53 16 8 N -0.94 -55.99 13.29 21.45 0.28 -55.70 16 9 Si 0.97 43.73 29.54 68.60 2.03 45.75 16 10 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 13 C -0.10 -3.95 4.01 37.67 0.15 -3.80 16 14 C 0.05 1.69 11.11 83.41 0.93 2.62 16 15 N -0.47 -13.88 7.40 -56.77 -0.42 -14.30 16 16 H 0.45 9.50 8.96 -213.35 -1.91 7.59 16 17 N -0.38 -12.99 12.71 -54.24 -0.69 -13.68 16 18 C 0.35 12.56 8.46 133.43 1.13 13.69 16 19 N -0.83 -24.72 9.16 -54.30 -0.50 -25.21 16 20 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 21 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 22 H 0.04 1.30 7.52 -2.39 -0.02 1.28 16 23 H 0.07 2.76 6.60 -2.39 -0.02 2.74 16 24 H 0.02 0.77 7.63 -2.38 -0.02 0.75 16 25 H -0.01 -0.51 8.06 -2.39 -0.02 -0.52 16 26 H -0.03 -1.82 8.09 -2.39 -0.02 -1.84 16 27 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 28 H 0.18 5.46 8.06 -2.91 -0.02 5.44 16 29 H 0.42 12.39 8.96 -92.71 -0.83 11.55 16 30 H 0.41 9.83 8.96 -92.71 -0.83 8.99 16 Total: -1.00 -66.56 259.92 -0.46 -67.02 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: -2.40 Total: 23.04 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 4.45 Total: -3.73 kcal Atomic # 7 Polarization: -127.54 SS G_CDS: -4.54 Total: -132.08 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -66.56 -0.46 -67.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042450693.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.065 kcal (2) G-P(sol) polarization free energy of solvation -66.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds