Wall clock time and date at job start Mon Mar 30 2020 02:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 N 1.12396 * 1 3 3 N 1.12400 * 179.97438 * 2 1 4 4 C 1.46504 * 120.00008 * 100.74999 * 3 2 1 5 5 C 1.52994 * 109.46862 * 119.99973 * 4 3 2 6 6 N 1.46904 * 109.46718 * 180.02562 * 5 4 3 7 7 C 1.46907 * 110.99721 * 189.99864 * 6 5 4 8 8 C 1.50700 * 109.47018 * 161.83393 * 7 6 5 9 9 H 1.07992 * 119.99943 * 354.36612 * 8 7 6 10 10 C 1.37873 * 119.99924 * 174.36472 * 8 7 6 11 11 N 1.31516 * 120.00027 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 120.00083 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.46835 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.47017 * 120.00141 * 12 10 8 15 15 H 1.48505 * 109.46948 * 240.00385 * 12 10 8 16 16 C 1.46896 * 111.00183 * 66.04770 * 6 5 4 17 17 C 1.53002 * 117.49742 * 261.91028 * 16 6 5 18 18 C 1.53005 * 117.49948 * 193.25077 * 16 6 5 19 19 H 1.09002 * 109.47153 * 240.00085 * 4 3 2 20 20 H 1.09000 * 109.46690 * 359.97438 * 4 3 2 21 21 H 1.09003 * 109.46895 * 299.99693 * 5 4 3 22 22 H 1.09000 * 109.47725 * 60.00318 * 5 4 3 23 23 H 1.09007 * 109.47201 * 281.83187 * 7 6 5 24 24 H 1.08994 * 109.47184 * 41.83083 * 7 6 5 25 25 H 0.97007 * 119.99731 * 180.02562 * 11 10 8 26 26 H 1.09002 * 115.55278 * 47.57700 * 16 6 5 27 27 H 1.09006 * 117.49484 * 359.97438 * 17 16 6 28 28 H 1.08997 * 117.50276 * 145.02351 * 17 16 6 29 29 H 1.09001 * 117.49913 * 214.97944 * 18 16 6 30 30 H 1.09003 * 117.49649 * 359.97193 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 7 1.1240 0.0000 0.0000 3 7 2.2480 0.0005 0.0000 4 6 2.9804 0.2375 -1.2465 5 6 3.8594 1.4803 -1.0930 6 7 4.5933 1.7182 -2.3432 7 6 5.6195 2.7537 -2.1622 8 6 6.6250 2.6655 -3.2812 9 1 6.5654 1.8603 -3.9984 10 6 7.6208 3.6129 -3.3895 11 7 7.6936 4.5932 -2.5158 12 14 8.8668 3.5040 -4.7771 13 1 8.5679 2.3175 -5.6186 14 1 8.7902 4.7320 -5.6085 15 1 10.2322 3.3761 -4.2074 16 6 3.6749 2.0722 -3.4336 17 6 3.2592 0.9584 -4.3967 18 6 4.2290 2.0486 -4.8596 19 1 3.6074 -0.6258 -1.4692 20 1 2.2719 0.3912 -2.0605 21 1 3.2323 2.3436 -0.8704 22 1 4.5678 1.3261 -0.2791 23 1 5.1493 3.7371 -2.1729 24 1 6.1239 2.6026 -1.2078 25 1 8.3941 5.2599 -2.5922 26 1 2.9327 2.8339 -3.1946 27 1 3.6676 -0.0369 -4.2214 28 1 2.2438 0.9875 -4.7917 29 1 3.8511 2.7945 -5.5589 30 1 5.2751 1.7708 -4.9885 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042548487.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:23 Heat of formation + Delta-G solvation = 138.700800 kcal Electronic energy + Delta-G solvation = -13580.208821 eV Core-core repulsion = 11221.681548 eV Total energy + Delta-G solvation = -2358.527273 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.59486 -38.03736 -36.31740 -33.79467 -32.66229 -29.93435 -26.53931 -23.03392 -22.34746 -21.72801 -19.59257 -18.84220 -17.93855 -17.60562 -16.51265 -15.69530 -15.03159 -14.85389 -14.58370 -13.34085 -13.29043 -12.97410 -12.12898 -11.99094 -11.29212 -11.15641 -10.95305 -10.86099 -10.61289 -10.20603 -9.91717 -9.63782 -9.30692 -9.19067 -8.81942 -8.44872 -7.47645 -6.05722 -4.06098 1.38941 2.46341 3.20973 3.28417 3.36487 3.39727 4.35932 4.44153 4.68283 5.04260 5.25740 5.30765 5.50052 5.55610 5.63096 5.68573 5.90064 6.05572 6.14455 6.26656 6.32350 6.59951 6.92109 7.12157 7.29286 7.77986 8.01027 8.07481 8.44502 8.99863 9.56919 9.62238 11.05091 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.049803 B = 0.007141 C = 0.006544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.083152 B = 3920.118688 C = 4277.661495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.208 5.208 2 N 0.280 4.720 3 N -0.374 5.374 4 C 0.078 3.922 5 C 0.061 3.939 6 N -0.508 5.508 7 C 0.196 3.804 8 C -0.500 4.500 9 H 0.070 0.930 10 C 0.054 3.946 11 N -0.899 5.899 12 Si 0.895 3.105 13 H -0.272 1.272 14 H -0.285 1.285 15 H -0.284 1.284 16 C 0.018 3.982 17 C -0.192 4.192 18 C -0.150 4.150 19 H 0.110 0.890 20 H 0.065 0.935 21 H 0.026 0.974 22 H 0.087 0.913 23 H -0.001 1.001 24 H 0.029 0.971 25 H 0.260 0.740 26 H 0.069 0.931 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.639 -6.593 -0.331 10.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.200 5.200 2 N 0.282 4.718 3 N -0.290 5.290 4 C -0.049 4.049 5 C -0.069 4.069 6 N -0.233 5.233 7 C 0.072 3.928 8 C -0.539 4.539 9 H 0.088 0.912 10 C -0.147 4.147 11 N -0.539 5.539 12 Si 0.723 3.277 13 H -0.196 1.196 14 H -0.212 1.212 15 H -0.211 1.211 16 C -0.092 4.092 17 C -0.230 4.230 18 C -0.187 4.187 19 H 0.128 0.872 20 H 0.084 0.916 21 H 0.044 0.956 22 H 0.106 0.894 23 H 0.017 0.983 24 H 0.047 0.953 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.111 0.889 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.659 -6.960 0.071 11.110 hybrid contribution 0.399 1.027 -0.927 1.440 sum -8.260 -5.933 -0.856 10.206 Atomic orbital electron populations 1.87623 0.88850 1.42677 1.00874 1.41557 1.01871 1.11801 1.16595 1.70763 0.88283 1.42947 1.27053 1.22723 0.96568 1.02133 0.83514 1.22025 0.96420 0.93743 0.94705 1.61880 1.11776 1.47661 1.02007 1.19753 0.88114 0.87071 0.97866 1.21246 1.10685 1.10303 1.11649 0.91208 1.24983 0.97916 0.95361 0.96413 1.69966 1.33828 1.14231 1.35882 0.86489 0.81255 0.77910 0.82063 1.19607 1.21165 1.21059 1.22146 0.98155 0.98548 0.90331 1.23108 0.99051 0.95633 1.05198 1.23162 1.00793 0.99518 0.95242 0.87193 0.91625 0.95618 0.89414 0.98272 0.95321 0.92989 0.91339 0.88851 0.90258 0.90066 0.86092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.21 -2.69 20.57 60.35 1.24 -1.45 16 2 N 0.28 3.70 10.23 60.35 0.62 4.32 16 3 N -0.37 -5.11 11.31 -10.61 -0.12 -5.23 16 4 C 0.08 1.07 6.39 -4.04 -0.03 1.05 16 5 C 0.06 1.03 5.27 -3.82 -0.02 1.01 16 6 N -0.51 -10.12 4.58 -228.08 -1.05 -11.16 16 7 C 0.20 4.84 4.75 -4.97 -0.02 4.82 16 8 C -0.50 -13.20 7.82 -34.44 -0.27 -13.47 16 9 H 0.07 1.81 5.55 -52.49 -0.29 1.51 16 10 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 11 N -0.90 -26.01 13.29 55.43 0.74 -25.27 16 12 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 13 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 14 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 C 0.02 0.32 4.19 -67.71 -0.28 0.04 16 17 C -0.19 -2.92 9.31 -26.69 -0.25 -3.17 16 18 C -0.15 -2.71 9.41 -26.69 -0.25 -2.96 16 19 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 20 H 0.07 0.87 6.51 -51.93 -0.34 0.53 16 21 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 22 H 0.09 1.49 7.84 -51.93 -0.41 1.08 16 23 H 0.00 -0.02 8.02 -51.93 -0.42 -0.43 16 24 H 0.03 0.75 7.76 -51.93 -0.40 0.35 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 30 H 0.12 2.47 5.32 -51.93 -0.28 2.19 16 LS Contribution 261.60 15.07 3.94 3.94 Total: -1.00 -27.48 261.60 -4.67 -32.15 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -3.80 Total: -1.88 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -1.22 Total: -11.30 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 1.43 Total: -38.80 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -27.48 -4.67 -32.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042548487.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.847 kcal (2) G-P(sol) polarization free energy of solvation -27.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds