Wall clock time and date at job start Mon Mar 30 2020 02:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 N 1.12396 * 1 3 3 N 1.12400 * 179.97438 * 2 1 4 4 C 1.46504 * 120.00008 * 100.74999 * 3 2 1 5 5 C 1.52994 * 109.46862 * 119.99973 * 4 3 2 6 6 N 1.46904 * 109.46718 * 180.02562 * 5 4 3 7 7 C 1.46907 * 110.99721 * 189.99864 * 6 5 4 8 8 C 1.50700 * 109.47018 * 161.83393 * 7 6 5 9 9 H 1.07992 * 119.99943 * 354.36612 * 8 7 6 10 10 C 1.37873 * 119.99924 * 174.36472 * 8 7 6 11 11 N 1.31516 * 120.00027 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 120.00083 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.46835 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.47017 * 120.00141 * 12 10 8 15 15 H 1.48505 * 109.46948 * 240.00385 * 12 10 8 16 16 C 1.46896 * 111.00183 * 66.04770 * 6 5 4 17 17 C 1.53002 * 117.49742 * 261.91028 * 16 6 5 18 18 C 1.53005 * 117.49948 * 193.25077 * 16 6 5 19 19 H 1.09002 * 109.47153 * 240.00085 * 4 3 2 20 20 H 1.09000 * 109.46690 * 359.97438 * 4 3 2 21 21 H 1.09003 * 109.46895 * 299.99693 * 5 4 3 22 22 H 1.09000 * 109.47725 * 60.00318 * 5 4 3 23 23 H 1.09007 * 109.47201 * 281.83187 * 7 6 5 24 24 H 1.08994 * 109.47184 * 41.83083 * 7 6 5 25 25 H 0.97007 * 119.99731 * 180.02562 * 11 10 8 26 26 H 1.09002 * 115.55278 * 47.57700 * 16 6 5 27 27 H 1.09006 * 117.49484 * 359.97438 * 17 16 6 28 28 H 1.08997 * 117.50276 * 145.02351 * 17 16 6 29 29 H 1.09001 * 117.49913 * 214.97944 * 18 16 6 30 30 H 1.09003 * 117.49649 * 359.97193 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 7 1.1240 0.0000 0.0000 3 7 2.2480 0.0005 0.0000 4 6 2.9804 0.2375 -1.2465 5 6 3.8594 1.4803 -1.0930 6 7 4.5933 1.7182 -2.3432 7 6 5.6195 2.7537 -2.1622 8 6 6.6250 2.6655 -3.2812 9 1 6.5654 1.8603 -3.9984 10 6 7.6208 3.6129 -3.3895 11 7 7.6936 4.5932 -2.5158 12 14 8.8668 3.5040 -4.7771 13 1 8.5679 2.3175 -5.6186 14 1 8.7902 4.7320 -5.6085 15 1 10.2322 3.3761 -4.2074 16 6 3.6749 2.0722 -3.4336 17 6 3.2592 0.9584 -4.3967 18 6 4.2290 2.0486 -4.8596 19 1 3.6074 -0.6258 -1.4692 20 1 2.2719 0.3912 -2.0605 21 1 3.2323 2.3436 -0.8704 22 1 4.5678 1.3261 -0.2791 23 1 5.1493 3.7371 -2.1729 24 1 6.1239 2.6026 -1.2078 25 1 8.3941 5.2599 -2.5922 26 1 2.9327 2.8339 -3.1946 27 1 3.6676 -0.0369 -4.2214 28 1 2.2438 0.9875 -4.7917 29 1 3.8511 2.7945 -5.5589 30 1 5.2751 1.7708 -4.9885 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042548487.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:23 Heat of formation + Delta-G solvation = 118.059576 kcal Electronic energy + Delta-G solvation = -13581.103892 eV Core-core repulsion = 11221.681548 eV Total energy + Delta-G solvation = -2359.422343 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.66268 -39.50581 -37.44027 -35.37243 -34.52822 -31.45563 -28.35797 -24.51081 -24.11939 -23.05917 -21.11298 -19.96627 -19.02503 -18.85591 -18.30180 -16.85282 -16.66659 -16.44474 -16.15014 -15.00483 -14.60151 -14.53196 -13.90990 -13.61197 -13.02971 -12.70972 -12.63996 -12.35488 -12.29068 -11.80120 -11.27031 -11.17066 -10.94150 -10.75224 -10.51614 -9.94219 -9.13201 -8.14561 -6.21622 0.31814 1.39321 1.43558 1.45227 1.57179 2.12746 2.44014 2.99900 3.18111 3.24449 3.86639 4.01647 4.16919 4.25901 4.36022 4.43668 4.55216 4.84024 4.89187 4.90835 4.99247 5.13848 5.21361 5.35758 5.48358 5.80238 6.08961 6.34457 6.57856 6.93397 7.46248 8.55934 8.96833 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.049803 B = 0.007141 C = 0.006544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.083152 B = 3920.118688 C = 4277.661495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.197 5.197 2 N 0.282 4.718 3 N -0.381 5.381 4 C 0.092 3.908 5 C 0.062 3.938 6 N -0.508 5.508 7 C 0.209 3.791 8 C -0.503 4.503 9 H 0.076 0.924 10 C -0.001 4.001 11 N -0.940 5.940 12 Si 0.962 3.038 13 H -0.259 1.259 14 H -0.284 1.284 15 H -0.283 1.283 16 C -0.007 4.007 17 C -0.148 4.148 18 C -0.169 4.169 19 H 0.123 0.877 20 H 0.077 0.923 21 H 0.019 0.981 22 H 0.079 0.921 23 H -0.035 1.035 24 H 0.004 0.996 25 H 0.261 0.739 26 H 0.068 0.932 27 H 0.102 0.898 28 H 0.112 0.888 29 H 0.092 0.908 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.617 -8.107 -1.536 12.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.190 5.190 2 N 0.284 4.716 3 N -0.297 5.297 4 C -0.036 4.036 5 C -0.068 4.068 6 N -0.233 5.233 7 C 0.083 3.917 8 C -0.541 4.541 9 H 0.094 0.906 10 C -0.198 4.198 11 N -0.581 5.581 12 Si 0.787 3.213 13 H -0.182 1.182 14 H -0.210 1.210 15 H -0.209 1.209 16 C -0.116 4.116 17 C -0.186 4.186 18 C -0.206 4.206 19 H 0.140 0.860 20 H 0.095 0.905 21 H 0.037 0.963 22 H 0.098 0.902 23 H -0.017 1.017 24 H 0.022 0.978 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.120 0.880 28 H 0.130 0.870 29 H 0.110 0.890 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.660 -8.501 -1.136 12.918 hybrid contribution 0.607 1.496 -0.506 1.691 sum -9.053 -7.006 -1.643 11.564 Atomic orbital electron populations 1.87630 0.88703 1.41930 1.00689 1.41519 1.01800 1.11663 1.16663 1.70753 0.88454 1.43559 1.26970 1.22512 0.96425 1.00704 0.83931 1.22021 0.96418 0.95236 0.93151 1.61778 1.12268 1.45350 1.03864 1.19405 0.89103 0.86843 0.96305 1.21577 1.10681 1.10093 1.11757 0.90624 1.25852 1.00026 0.95086 0.98823 1.70103 1.34840 1.15255 1.37948 0.85434 0.78492 0.78232 0.79094 1.18227 1.20972 1.20948 1.22265 0.98393 1.01077 0.89902 1.23162 0.99810 0.94569 1.01009 1.23113 1.00282 1.01807 0.95368 0.85958 0.90490 0.96263 0.90246 1.01682 0.97753 0.93019 0.91448 0.88003 0.87024 0.88976 0.88672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.20 -4.65 20.57 37.02 0.76 -3.89 16 2 N 0.28 6.85 10.23 37.02 0.38 7.23 16 3 N -0.38 -9.71 11.31 -187.49 -2.12 -11.83 16 4 C 0.09 2.33 6.39 86.38 0.55 2.88 16 5 C 0.06 2.06 5.27 86.30 0.45 2.51 16 6 N -0.51 -20.18 4.58 -875.50 -4.01 -24.19 16 7 C 0.21 10.67 4.75 85.56 0.41 11.08 16 8 C -0.50 -26.89 7.82 25.60 0.20 -26.69 16 9 H 0.08 3.90 5.55 -2.91 -0.02 3.89 16 10 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 11 N -0.94 -55.76 13.29 21.45 0.28 -55.47 16 12 Si 0.96 43.10 29.54 68.60 2.03 45.13 16 13 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 14 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 15 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 16 C -0.01 -0.26 4.19 44.92 0.19 -0.07 16 17 C -0.15 -4.00 9.31 30.62 0.29 -3.72 16 18 C -0.17 -5.83 9.41 30.62 0.29 -5.54 16 19 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 20 H 0.08 1.80 6.51 -2.39 -0.02 1.78 16 21 H 0.02 0.66 8.12 -2.39 -0.02 0.64 16 22 H 0.08 2.74 7.84 -2.39 -0.02 2.72 16 23 H -0.03 -1.97 8.02 -2.38 -0.02 -1.99 16 24 H 0.00 0.24 7.76 -2.39 -0.02 0.22 16 25 H 0.26 14.65 8.31 -92.70 -0.77 13.88 16 26 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 27 H 0.10 2.64 8.14 -2.38 -0.02 2.62 16 28 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 30 H 0.10 3.81 5.32 -2.39 -0.01 3.80 16 Total: -1.00 -59.35 261.60 1.29 -58.06 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: 1.13 Total: 4.09 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: 2.84 Total: -19.13 kcal Atomic # 7 Polarization: -83.45 SS G_CDS: -4.71 Total: -88.16 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -59.35 1.29 -58.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042548487.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.123 kcal (2) G-P(sol) polarization free energy of solvation -59.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds