Wall clock time and date at job start Mon Mar 30 2020 02:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30576 * 125.61575 * 2 1 4 4 C 1.34318 * 109.44302 * 179.71402 * 3 2 1 5 5 N 1.41108 * 125.97819 * 180.29754 * 4 3 2 6 6 C 1.35749 * 108.04652 * 0.43456 * 4 3 2 7 7 N 1.40172 * 126.66525 * 179.84002 * 6 4 3 8 8 C 1.46901 * 110.99637 * 243.66627 * 7 6 4 9 9 C 1.46901 * 110.99840 * 119.71646 * 7 6 4 10 10 C 1.50701 * 109.46921 * 189.99605 * 9 7 6 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 7 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 7 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47432 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46890 * 120.00210 * 14 12 10 17 17 H 1.48501 * 109.47062 * 240.00257 * 14 12 10 18 18 N 1.36067 * 125.61877 * 179.97438 * 2 1 3 19 19 H 0.97007 * 126.46137 * 0.02658 * 18 2 1 20 20 H 1.09000 * 109.47105 * 270.01596 * 1 2 3 21 21 H 1.08991 * 109.47295 * 30.01978 * 1 2 3 22 22 H 1.09008 * 109.47289 * 150.02358 * 1 2 3 23 23 H 0.96993 * 120.00307 * 180.16372 * 5 4 3 24 24 H 0.97007 * 119.99322 * 0.16464 * 5 4 3 25 25 H 1.09001 * 109.47121 * 296.04735 * 8 7 6 26 26 H 1.09005 * 109.47342 * 56.04829 * 8 7 6 27 27 H 1.08999 * 109.46894 * 176.04748 * 8 7 6 28 28 H 1.09002 * 109.47401 * 69.99633 * 9 7 6 29 29 H 1.09001 * 109.46874 * 309.99645 * 9 7 6 30 30 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2673 1.0615 0.0000 4 6 3.5573 0.6874 0.0063 5 7 4.6715 1.5532 0.0143 6 6 3.6018 -0.6694 0.0007 7 7 4.7529 -1.4691 0.0011 8 6 4.8422 -2.2638 -1.2312 9 6 4.7933 -2.3329 1.1887 10 6 6.1451 -2.9922 1.2844 11 1 6.8989 -2.7896 0.5381 12 6 6.4198 -3.8535 2.3256 13 7 5.5020 -4.0999 3.2347 14 14 8.0955 -4.6701 2.4447 15 1 8.9429 -4.2297 1.3074 16 1 8.7445 -4.2842 3.7234 17 1 7.9316 -6.1454 2.3982 18 7 2.2994 -1.1061 0.0005 19 1 2.0009 -2.0291 0.0005 20 1 -0.3633 0.0003 1.0277 21 1 -0.3633 0.8897 -0.5141 22 1 -0.3634 -0.8903 -0.5135 23 1 5.5699 1.1876 0.0160 24 1 4.5389 2.5142 0.0179 25 1 4.0044 -2.9596 -1.2763 26 1 4.8100 -1.5997 -2.0950 27 1 5.7786 -2.8218 -1.2365 28 1 4.0209 -3.0978 1.1081 29 1 4.6180 -1.7321 2.0811 30 1 5.6952 -4.7061 3.9669 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042871475.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:32 Heat of formation + Delta-G solvation = 59.637886 kcal Electronic energy + Delta-G solvation = -13844.341800 eV Core-core repulsion = 11482.386102 eV Total energy + Delta-G solvation = -2361.955698 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.37452 -36.23863 -33.81731 -32.62759 -30.88697 -30.10271 -27.38299 -26.19997 -24.01508 -21.62973 -20.36522 -19.55483 -17.29500 -16.42172 -15.42237 -15.15961 -14.98227 -14.48667 -13.72959 -13.47528 -13.38088 -12.77228 -12.40868 -12.32704 -12.06882 -11.43569 -11.03424 -10.80510 -10.64570 -10.40019 -10.10050 -9.74566 -9.24410 -8.72906 -8.54432 -7.70103 -6.59884 -6.10864 -4.13788 2.56943 3.26249 3.33913 3.38381 3.56611 3.77904 4.32609 4.36178 4.91661 5.18068 5.24870 5.34078 5.64569 5.93114 5.94852 6.04669 6.12027 6.55212 6.65600 6.84606 7.13802 7.17528 7.58371 7.81174 7.96304 8.02112 8.19800 8.29749 8.63632 8.92980 8.95664 9.50935 10.99632 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.044703 B = 0.007999 C = 0.007518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.201346 B = 3499.508096 C = 3723.561789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.210 3.790 3 N -0.519 5.519 4 C 0.291 3.709 5 N -0.855 5.855 6 C 0.087 3.913 7 N -0.449 5.449 8 C 0.039 3.961 9 C 0.195 3.805 10 C -0.512 4.512 11 H 0.066 0.934 12 C 0.056 3.944 13 N -0.897 5.897 14 Si 0.901 3.099 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.285 1.285 18 N -0.581 5.581 19 H 0.412 0.588 20 H 0.076 0.924 21 H 0.085 0.915 22 H 0.069 0.931 23 H 0.409 0.591 24 H 0.391 0.609 25 H 0.011 0.989 26 H 0.049 0.951 27 H 0.080 0.920 28 H -0.011 1.011 29 H 0.033 0.967 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.481 5.188 -6.813 10.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.054 4.054 3 N -0.248 5.248 4 C 0.065 3.935 5 N -0.405 5.405 6 C -0.121 4.121 7 N -0.172 5.172 8 C -0.109 4.109 9 C 0.071 3.929 10 C -0.550 4.550 11 H 0.084 0.916 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.728 3.272 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.211 1.211 18 N -0.191 5.191 19 H 0.249 0.751 20 H 0.095 0.905 21 H 0.104 0.896 22 H 0.088 0.912 23 H 0.239 0.761 24 H 0.218 0.782 25 H 0.030 0.970 26 H 0.068 0.932 27 H 0.099 0.901 28 H 0.007 0.993 29 H 0.051 0.949 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.373 6.150 -6.633 11.065 hybrid contribution 0.666 -2.202 0.292 2.319 sum -5.707 3.948 -6.341 9.400 Atomic orbital electron populations 1.20085 0.85390 1.03364 1.03128 1.22755 0.94636 0.81330 1.06668 1.69784 1.00501 1.28899 1.25637 1.17101 0.86752 0.86352 1.03300 1.41320 1.04161 1.05970 1.89080 1.19443 0.80746 0.93115 1.18843 1.60234 1.26777 1.25664 1.04504 1.22277 1.01407 0.95848 0.91386 1.19834 0.97065 0.89715 0.86290 1.21156 0.98401 1.25285 1.10173 0.91551 1.25000 0.97386 0.96677 0.95483 1.69971 1.33685 1.36416 1.13503 0.86398 0.83749 0.78887 0.78135 1.19555 1.20911 1.21080 1.43803 1.07693 1.09334 1.58304 0.75126 0.90540 0.89617 0.91223 0.76057 0.78192 0.96997 0.93218 0.90087 0.99285 0.94898 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.68 10.51 36.00 0.38 -0.30 16 2 C 0.21 3.48 8.18 -154.41 -1.26 2.21 16 3 N -0.52 -9.88 11.25 -9.26 -0.10 -9.99 16 4 C 0.29 5.83 8.35 -152.49 -1.27 4.55 16 5 N -0.86 -14.62 9.21 31.25 0.29 -14.34 16 6 C 0.09 1.80 5.74 -150.68 -0.87 0.94 16 7 N -0.45 -9.91 4.85 -181.62 -0.88 -10.79 16 8 C 0.04 0.75 9.30 60.07 0.56 1.31 16 9 C 0.20 5.09 4.66 -4.97 -0.02 5.07 16 10 C -0.51 -14.15 8.51 -34.44 -0.29 -14.44 16 11 H 0.07 1.80 7.10 -52.49 -0.37 1.43 16 12 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 13 N -0.90 -26.41 13.29 55.43 0.74 -25.68 16 14 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 15 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 N -0.58 -10.30 6.21 -8.86 -0.06 -10.35 16 19 H 0.41 6.54 8.96 -40.82 -0.37 6.17 16 20 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 22 H 0.07 0.62 8.14 -51.92 -0.42 0.19 16 23 H 0.41 6.87 8.96 -40.82 -0.37 6.51 16 24 H 0.39 5.72 8.96 -40.82 -0.37 5.36 16 25 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 26 H 0.05 0.88 8.13 -51.93 -0.42 0.45 16 27 H 0.08 1.63 6.86 -51.93 -0.36 1.27 16 28 H -0.01 -0.29 8.12 -51.93 -0.42 -0.71 16 29 H 0.03 0.96 8.06 -51.93 -0.42 0.54 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 262.42 15.07 3.95 3.95 Total: -1.00 -31.87 262.42 -7.88 -39.74 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -3.91 Total: 10.32 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -2.88 Total: 0.82 kcal Atomic # 7 Polarization: -71.12 SS G_CDS: -0.02 Total: -71.14 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.87 -7.88 -39.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042871475.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.378 kcal (2) G-P(sol) polarization free energy of solvation -31.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds