Wall clock time and date at job start Mon Mar 30 2020 02:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30576 * 125.61575 * 2 1 4 4 C 1.34318 * 109.44302 * 179.71402 * 3 2 1 5 5 N 1.41108 * 125.97819 * 180.29754 * 4 3 2 6 6 C 1.35749 * 108.04652 * 0.43456 * 4 3 2 7 7 N 1.40172 * 126.66525 * 179.84002 * 6 4 3 8 8 C 1.46901 * 110.99637 * 243.66627 * 7 6 4 9 9 C 1.46901 * 110.99840 * 119.71646 * 7 6 4 10 10 C 1.50701 * 109.46921 * 189.99605 * 9 7 6 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 7 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 7 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47432 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46890 * 120.00210 * 14 12 10 17 17 H 1.48501 * 109.47062 * 240.00257 * 14 12 10 18 18 N 1.36067 * 125.61877 * 179.97438 * 2 1 3 19 19 H 0.97007 * 126.46137 * 0.02658 * 18 2 1 20 20 H 1.09000 * 109.47105 * 270.01596 * 1 2 3 21 21 H 1.08991 * 109.47295 * 30.01978 * 1 2 3 22 22 H 1.09008 * 109.47289 * 150.02358 * 1 2 3 23 23 H 0.96993 * 120.00307 * 180.16372 * 5 4 3 24 24 H 0.97007 * 119.99322 * 0.16464 * 5 4 3 25 25 H 1.09001 * 109.47121 * 296.04735 * 8 7 6 26 26 H 1.09005 * 109.47342 * 56.04829 * 8 7 6 27 27 H 1.08999 * 109.46894 * 176.04748 * 8 7 6 28 28 H 1.09002 * 109.47401 * 69.99633 * 9 7 6 29 29 H 1.09001 * 109.46874 * 309.99645 * 9 7 6 30 30 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2673 1.0615 0.0000 4 6 3.5573 0.6874 0.0063 5 7 4.6715 1.5532 0.0143 6 6 3.6018 -0.6694 0.0007 7 7 4.7529 -1.4691 0.0011 8 6 4.8422 -2.2638 -1.2312 9 6 4.7933 -2.3329 1.1887 10 6 6.1451 -2.9922 1.2844 11 1 6.8989 -2.7896 0.5381 12 6 6.4198 -3.8535 2.3256 13 7 5.5020 -4.0999 3.2347 14 14 8.0955 -4.6701 2.4447 15 1 8.9429 -4.2297 1.3074 16 1 8.7445 -4.2842 3.7234 17 1 7.9316 -6.1454 2.3982 18 7 2.2994 -1.1061 0.0005 19 1 2.0009 -2.0291 0.0005 20 1 -0.3633 0.0003 1.0277 21 1 -0.3633 0.8897 -0.5141 22 1 -0.3634 -0.8903 -0.5135 23 1 5.5699 1.1876 0.0160 24 1 4.5389 2.5142 0.0179 25 1 4.0044 -2.9596 -1.2763 26 1 4.8100 -1.5997 -2.0950 27 1 5.7786 -2.8218 -1.2365 28 1 4.0209 -3.0978 1.1081 29 1 4.6180 -1.7321 2.0811 30 1 5.6952 -4.7061 3.9669 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042871475.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:31 Heat of formation + Delta-G solvation = 36.379018 kcal Electronic energy + Delta-G solvation = -13845.350380 eV Core-core repulsion = 11482.386102 eV Total energy + Delta-G solvation = -2362.964278 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.80226 -37.96784 -35.22388 -34.69917 -32.31984 -31.27080 -29.38374 -27.69776 -25.77333 -23.37190 -21.82355 -21.02627 -18.84190 -18.43107 -17.01424 -16.74647 -16.47579 -16.19067 -15.30570 -15.07850 -14.96540 -14.16509 -14.01217 -13.48912 -13.31204 -13.12458 -12.86756 -12.68381 -12.43895 -12.08753 -11.79474 -11.53110 -10.99600 -10.68077 -10.15159 -9.46154 -8.27345 -8.03460 -6.36267 1.15163 1.40677 1.42020 1.55475 2.19715 2.31700 2.39209 3.02113 3.08336 3.24909 3.98198 4.25442 4.46416 4.51371 4.80572 4.84965 4.95000 4.98357 5.08139 5.14101 5.21423 5.49773 5.62562 5.95803 6.12346 6.25616 6.63633 6.78797 6.91007 7.05543 7.34028 7.57113 8.86359 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.044703 B = 0.007999 C = 0.007518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.201346 B = 3499.508096 C = 3723.561789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.229 3.771 3 N -0.544 5.544 4 C 0.283 3.717 5 N -0.848 5.848 6 C 0.044 3.956 7 N -0.451 5.451 8 C 0.044 3.956 9 C 0.218 3.782 10 C -0.526 4.526 11 H 0.069 0.931 12 C 0.003 3.997 13 N -0.934 5.934 14 Si 0.974 3.026 15 H -0.260 1.260 16 H -0.280 1.280 17 H -0.278 1.278 18 N -0.582 5.582 19 H 0.418 0.582 20 H 0.091 0.909 21 H 0.100 0.900 22 H 0.097 0.903 23 H 0.410 0.590 24 H 0.402 0.598 25 H 0.015 0.985 26 H 0.070 0.930 27 H 0.072 0.928 28 H -0.032 1.032 29 H -0.008 1.008 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.730 5.230 -7.595 11.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.035 4.035 3 N -0.273 5.273 4 C 0.056 3.944 5 N -0.398 5.398 6 C -0.164 4.164 7 N -0.173 5.173 8 C -0.104 4.104 9 C 0.092 3.908 10 C -0.565 4.565 11 H 0.088 0.912 12 C -0.196 4.196 13 N -0.574 5.574 14 Si 0.798 3.202 15 H -0.184 1.184 16 H -0.206 1.206 17 H -0.203 1.203 18 N -0.193 5.193 19 H 0.257 0.743 20 H 0.109 0.891 21 H 0.119 0.881 22 H 0.115 0.885 23 H 0.240 0.760 24 H 0.231 0.769 25 H 0.034 0.966 26 H 0.088 0.912 27 H 0.090 0.910 28 H -0.015 1.015 29 H 0.010 0.990 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.616 6.213 -7.439 11.735 hybrid contribution 0.612 -2.130 0.519 2.276 sum -6.004 4.083 -6.920 10.031 Atomic orbital electron populations 1.20364 0.81306 1.05497 1.04697 1.23916 0.96645 0.80290 1.02674 1.69874 1.00192 1.29848 1.27433 1.17497 0.87781 0.86630 1.02459 1.41328 1.03662 1.06453 1.88396 1.19367 0.81372 0.93233 1.22447 1.60003 1.28581 1.24939 1.03756 1.22261 1.01029 0.96082 0.91000 1.19383 0.95870 0.88795 0.86734 1.21470 0.99063 1.25520 1.10401 0.91247 1.25944 1.01445 0.97227 0.94951 1.70099 1.35942 1.37162 1.14179 0.85268 0.78752 0.77857 0.78334 1.18396 1.20616 1.20317 1.43735 1.06953 1.10079 1.58550 0.74334 0.89073 0.88104 0.88473 0.76018 0.76869 0.96629 0.91156 0.90951 1.01456 0.99006 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.14 10.51 71.23 0.75 -0.39 16 2 C 0.23 7.21 8.18 137.77 1.13 8.33 16 3 N -0.54 -20.06 11.25 -183.20 -2.06 -22.12 16 4 C 0.28 11.22 8.35 130.96 1.09 12.31 16 5 N -0.85 -28.66 9.21 -55.03 -0.51 -29.16 16 6 C 0.04 1.82 5.74 130.32 0.75 2.57 16 7 N -0.45 -20.11 4.85 -728.52 -3.54 -23.64 16 8 C 0.04 1.69 9.30 127.69 1.19 2.88 16 9 C 0.22 11.69 4.66 85.56 0.40 12.09 16 10 C -0.53 -29.47 8.51 25.60 0.22 -29.25 16 11 H 0.07 3.76 7.10 -2.91 -0.02 3.74 16 12 C 0.00 0.15 5.46 84.66 0.46 0.61 16 13 N -0.93 -55.84 13.29 21.45 0.28 -55.55 16 14 Si 0.97 43.62 29.54 68.60 2.03 45.65 16 15 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 16 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 17 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 18 N -0.58 -20.27 6.21 -181.95 -1.13 -21.41 16 19 H 0.42 13.09 8.96 -92.70 -0.83 12.26 16 20 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 21 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 22 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 23 H 0.41 13.70 8.96 -92.71 -0.83 12.87 16 24 H 0.40 11.48 8.96 -92.70 -0.83 10.65 16 25 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.07 2.41 8.13 -2.38 -0.02 2.39 16 27 H 0.07 2.89 6.86 -2.39 -0.02 2.87 16 28 H -0.03 -1.83 8.12 -2.39 -0.02 -1.85 16 29 H -0.01 -0.50 8.06 -2.39 -0.02 -0.52 16 30 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -68.68 262.42 -0.25 -68.93 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: -1.31 Total: 28.16 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 5.98 Total: 9.15 kcal Atomic # 7 Polarization: -144.94 SS G_CDS: -6.95 Total: -151.89 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -68.68 -0.25 -68.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042871475.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.312 kcal (2) G-P(sol) polarization free energy of solvation -68.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds