Wall clock time and date at job start Mon Mar 30 2020 02:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35494 * 126.97935 * 2 1 4 4 N 1.30526 * 107.30545 * 179.83284 * 3 2 1 5 5 N 1.28600 * 109.67197 * 0.43817 * 4 3 2 6 6 C 1.30517 * 109.67250 * 359.72320 * 5 4 3 7 7 C 1.50698 * 126.34522 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.47203 * 269.95285 * 7 6 5 9 9 C 1.46895 * 111.00253 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47525 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.47390 * 180.02562 * 10 9 8 12 12 H 1.07997 * 119.99710 * 0.02562 * 11 10 9 13 13 C 1.37872 * 119.99916 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00119 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99834 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46908 * 60.00361 * 15 13 11 17 17 H 1.48504 * 109.46899 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47346 * 300.00359 * 15 13 11 19 19 H 1.09002 * 109.47391 * 269.68706 * 1 2 3 20 20 H 1.09001 * 109.46813 * 149.68762 * 1 2 3 21 21 H 1.09004 * 109.47041 * 29.68889 * 1 2 3 22 22 H 1.07996 * 126.34608 * 359.97438 * 3 2 1 23 23 H 1.08995 * 109.47086 * 29.95554 * 7 6 5 24 24 H 1.09004 * 109.47234 * 149.95544 * 7 6 5 25 25 H 1.00908 * 110.99773 * 56.05175 * 8 7 6 26 26 H 1.09000 * 109.47485 * 300.00990 * 9 8 7 27 27 H 1.09005 * 109.47225 * 60.00306 * 9 8 7 28 28 H 1.08997 * 109.46913 * 300.00571 * 10 9 8 29 29 H 1.08993 * 109.46778 * 60.00280 * 10 9 8 30 30 H 0.97003 * 119.99874 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5091 0.6430 0.0036 5 7 3.5091 -0.6430 -0.0034 6 6 2.2801 -1.0824 -0.0059 7 6 1.8477 -2.5260 -0.0132 8 7 1.7064 -2.9878 -1.4005 9 6 1.2857 -4.3944 -1.4469 10 6 1.1502 -4.8385 -2.9048 11 6 0.7180 -6.2814 -2.9524 12 1 0.5557 -6.8270 -2.0346 13 6 0.5297 -6.9049 -4.1675 14 7 0.7278 -6.2407 -5.2851 15 14 -0.0054 -8.6937 -4.2265 16 1 -1.3143 -8.8416 -3.5408 17 1 -0.1370 -9.1246 -5.6415 18 1 1.0090 -9.5366 -3.5440 19 1 -0.3634 -0.0056 1.0276 20 1 -0.3633 -0.8872 -0.5187 21 1 -0.3633 0.8928 -0.5090 22 1 1.9701 2.1169 -0.0004 23 1 2.5963 -3.1320 0.4970 24 1 0.8911 -2.6214 0.5006 25 1 2.5625 -2.8496 -1.9166 26 1 2.0306 -5.0132 -0.9467 27 1 0.3253 -4.5032 -0.9429 28 1 0.4055 -4.2197 -3.4054 29 1 2.1107 -4.7298 -3.4084 30 1 0.5957 -6.6795 -6.1401 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050418116.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:49 Heat of formation + Delta-G solvation = 72.179794 kcal Electronic energy + Delta-G solvation = -13221.040910 eV Core-core repulsion = 10859.629070 eV Total energy + Delta-G solvation = -2361.411840 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.04685 -36.27394 -34.96835 -33.13868 -31.27202 -29.10020 -27.69915 -25.78114 -23.45922 -22.33514 -20.87051 -20.46495 -17.14833 -16.52044 -16.20169 -15.60682 -15.06317 -14.46284 -14.20673 -13.88543 -13.43191 -13.07660 -12.59071 -12.24520 -12.11205 -11.45423 -11.13023 -10.94976 -10.61190 -10.32115 -10.19509 -10.08171 -9.55740 -9.29588 -9.11206 -8.38863 -8.03520 -6.02717 -4.06080 1.80132 2.49465 2.91443 3.31671 3.36430 3.38363 4.26389 4.43339 4.53105 4.57495 4.81975 4.91298 5.07999 5.25786 5.33336 5.49258 5.63432 5.93156 6.14649 6.19928 6.29154 6.82043 6.87270 7.28300 7.63894 7.69771 7.83457 8.01542 8.37711 8.76876 9.00808 9.58065 11.08638 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.067904 B = 0.005169 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.250797 B = 5415.940493 C = 5472.806534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.468 5.468 3 C 0.141 3.859 4 N -0.301 5.301 5 N -0.296 5.296 6 C 0.191 3.809 7 C 0.140 3.860 8 N -0.689 5.689 9 C 0.066 3.934 10 C 0.026 3.974 11 C -0.524 4.524 12 H 0.055 0.945 13 C 0.059 3.941 14 N -0.893 5.893 15 Si 0.894 3.106 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 H 0.079 0.921 20 H 0.102 0.898 21 H 0.090 0.910 22 H 0.216 0.784 23 H 0.064 0.936 24 H 0.086 0.914 25 H 0.346 0.654 26 H 0.022 0.978 27 H 0.061 0.939 28 H 0.025 0.975 29 H 0.015 0.985 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.828 11.817 10.876 16.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.158 5.158 3 C -0.147 4.147 4 N -0.141 5.141 5 N -0.138 5.138 6 C -0.077 4.077 7 C 0.009 3.991 8 N -0.322 5.322 9 C -0.062 4.062 10 C -0.012 4.012 11 C -0.563 4.563 12 H 0.073 0.927 13 C -0.143 4.143 14 N -0.532 5.532 15 Si 0.722 3.278 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 H 0.098 0.902 20 H 0.121 0.879 21 H 0.109 0.891 22 H 0.232 0.768 23 H 0.082 0.918 24 H 0.105 0.895 25 H 0.164 0.836 26 H 0.040 0.960 27 H 0.079 0.921 28 H 0.043 0.957 29 H 0.034 0.966 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.993 12.047 10.627 16.187 hybrid contribution -1.015 -1.222 0.089 1.591 sum -3.008 10.825 10.716 15.526 Atomic orbital electron populations 1.22161 0.75129 1.06060 1.03835 1.46140 1.09388 1.06630 1.53654 1.26373 0.87400 0.94917 1.05994 1.74214 1.18191 1.03451 1.18194 1.74258 1.17291 1.03149 1.19061 1.24937 0.86999 0.92505 1.03234 1.20243 1.00942 0.84522 0.93418 1.60698 1.38699 1.23299 1.09456 1.22218 0.98401 0.83668 1.01875 1.19063 0.97620 0.95730 0.88767 1.21110 1.46407 0.96478 0.92295 0.92713 1.24998 0.95463 0.98109 0.95710 1.69961 1.49117 1.36699 0.97399 0.86634 0.79174 0.85072 0.76964 1.20230 1.21253 1.20223 0.90232 0.87930 0.89105 0.76756 0.91847 0.89530 0.83588 0.95958 0.92077 0.95698 0.96617 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 10.89 59.85 0.65 1.18 16 2 N -0.47 -5.47 3.15 -122.69 -0.39 -5.85 16 3 C 0.14 1.65 12.74 -89.94 -1.15 0.51 16 4 N -0.30 -4.85 12.21 29.69 0.36 -4.49 16 5 N -0.30 -5.16 12.21 32.80 0.40 -4.76 16 6 C 0.19 2.83 7.54 -154.99 -1.17 1.66 16 7 C 0.14 1.99 5.86 -4.98 -0.03 1.96 16 8 N -0.69 -11.89 6.49 -115.06 -0.75 -12.64 16 9 C 0.07 1.32 5.62 -3.83 -0.02 1.30 16 10 C 0.03 0.65 5.23 -27.88 -0.15 0.51 16 11 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 12 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 15 Si 0.89 21.39 29.54 -169.99 -5.02 16.36 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 20 H 0.10 0.88 7.81 -51.93 -0.41 0.47 16 21 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.22 1.44 8.06 -52.49 -0.42 1.01 16 23 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.09 1.04 7.86 -51.93 -0.41 0.63 16 25 H 0.35 6.31 8.72 -39.29 -0.34 5.97 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 266.16 15.07 4.01 4.01 Total: -1.00 -33.43 266.16 -6.99 -40.42 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -4.08 Total: -0.84 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -2.27 Total: -6.23 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: 0.37 Total: -53.74 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -33.43 -6.99 -40.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050418116.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.601 kcal (2) G-P(sol) polarization free energy of solvation -33.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds