Wall clock time and date at job start Mon Mar 30 2020 02:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35494 * 126.97935 * 2 1 4 4 N 1.30526 * 107.30545 * 179.83284 * 3 2 1 5 5 N 1.28600 * 109.67197 * 0.43817 * 4 3 2 6 6 C 1.30517 * 109.67250 * 359.72320 * 5 4 3 7 7 C 1.50698 * 126.34522 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.47203 * 269.95285 * 7 6 5 9 9 C 1.46895 * 111.00253 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47525 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.47390 * 180.02562 * 10 9 8 12 12 H 1.07997 * 119.99710 * 0.02562 * 11 10 9 13 13 C 1.37872 * 119.99916 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00119 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99834 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46908 * 60.00361 * 15 13 11 17 17 H 1.48504 * 109.46899 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47346 * 300.00359 * 15 13 11 19 19 H 1.09002 * 109.47391 * 269.68706 * 1 2 3 20 20 H 1.09001 * 109.46813 * 149.68762 * 1 2 3 21 21 H 1.09004 * 109.47041 * 29.68889 * 1 2 3 22 22 H 1.07996 * 126.34608 * 359.97438 * 3 2 1 23 23 H 1.08995 * 109.47086 * 29.95554 * 7 6 5 24 24 H 1.09004 * 109.47234 * 149.95544 * 7 6 5 25 25 H 1.00908 * 110.99773 * 56.05175 * 8 7 6 26 26 H 1.09000 * 109.47485 * 300.00990 * 9 8 7 27 27 H 1.09005 * 109.47225 * 60.00306 * 9 8 7 28 28 H 1.08997 * 109.46913 * 300.00571 * 10 9 8 29 29 H 1.08993 * 109.46778 * 60.00280 * 10 9 8 30 30 H 0.97003 * 119.99874 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5091 0.6430 0.0036 5 7 3.5091 -0.6430 -0.0034 6 6 2.2801 -1.0824 -0.0059 7 6 1.8477 -2.5260 -0.0132 8 7 1.7064 -2.9878 -1.4005 9 6 1.2857 -4.3944 -1.4469 10 6 1.1502 -4.8385 -2.9048 11 6 0.7180 -6.2814 -2.9524 12 1 0.5557 -6.8270 -2.0346 13 6 0.5297 -6.9049 -4.1675 14 7 0.7278 -6.2407 -5.2851 15 14 -0.0054 -8.6937 -4.2265 16 1 -1.3143 -8.8416 -3.5408 17 1 -0.1370 -9.1246 -5.6415 18 1 1.0090 -9.5366 -3.5440 19 1 -0.3634 -0.0056 1.0276 20 1 -0.3633 -0.8872 -0.5187 21 1 -0.3633 0.8928 -0.5090 22 1 1.9701 2.1169 -0.0004 23 1 2.5963 -3.1320 0.4970 24 1 0.8911 -2.6214 0.5006 25 1 2.5625 -2.8496 -1.9166 26 1 2.0306 -5.0132 -0.9467 27 1 0.3253 -4.5032 -0.9429 28 1 0.4055 -4.2197 -3.4054 29 1 2.1107 -4.7298 -3.4084 30 1 0.5957 -6.6795 -6.1401 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050418116.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:49 Heat of formation + Delta-G solvation = 49.147004 kcal Electronic energy + Delta-G solvation = -13222.039687 eV Core-core repulsion = 10859.629070 eV Total energy + Delta-G solvation = -2362.410617 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.06169 -37.72307 -35.92943 -35.09665 -32.74329 -30.69402 -28.46594 -27.31025 -25.17552 -23.29858 -22.49589 -21.69046 -18.51785 -18.05169 -17.34670 -16.86471 -16.50290 -16.03941 -15.48498 -15.27555 -14.26259 -14.19423 -14.04297 -13.93732 -13.36079 -12.95507 -12.80433 -12.53740 -12.45067 -11.96928 -11.46597 -11.36438 -11.30368 -11.06530 -10.55199 -10.33602 -9.45203 -8.19155 -6.30862 0.82406 1.42639 1.45626 1.53488 1.65928 1.84312 2.42147 3.14935 3.16734 3.53654 3.74043 3.93105 4.08097 4.39128 4.44328 4.51671 4.58837 4.67958 4.76603 4.98293 5.06791 5.17489 5.43986 5.65213 5.75158 5.96079 6.06437 6.16483 6.33295 6.86746 7.38917 7.72120 8.92929 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.067904 B = 0.005169 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.250797 B = 5415.940493 C = 5472.806534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.464 5.464 3 C 0.162 3.838 4 N -0.351 5.351 5 N -0.340 5.340 6 C 0.179 3.821 7 C 0.147 3.853 8 N -0.690 5.690 9 C 0.085 3.915 10 C 0.030 3.970 11 C -0.543 4.543 12 H 0.065 0.935 13 C 0.000 4.000 14 N -0.934 5.934 15 Si 0.967 3.033 16 H -0.264 1.264 17 H -0.286 1.286 18 H -0.268 1.268 19 H 0.105 0.895 20 H 0.090 0.910 21 H 0.119 0.881 22 H 0.265 0.735 23 H 0.064 0.936 24 H 0.113 0.887 25 H 0.337 0.663 26 H 0.025 0.975 27 H 0.075 0.925 28 H -0.003 1.003 29 H -0.014 1.014 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.366 11.975 12.221 17.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.154 5.154 3 C -0.126 4.126 4 N -0.190 5.190 5 N -0.181 5.181 6 C -0.091 4.091 7 C 0.016 3.984 8 N -0.322 5.322 9 C -0.043 4.043 10 C -0.007 4.007 11 C -0.582 4.582 12 H 0.084 0.916 13 C -0.198 4.198 14 N -0.574 5.574 15 Si 0.791 3.209 16 H -0.188 1.188 17 H -0.211 1.211 18 H -0.192 1.192 19 H 0.123 0.877 20 H 0.108 0.892 21 H 0.137 0.863 22 H 0.280 0.720 23 H 0.082 0.918 24 H 0.131 0.869 25 H 0.154 0.846 26 H 0.043 0.957 27 H 0.093 0.907 28 H 0.015 0.985 29 H 0.004 0.996 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.550 12.214 11.999 17.487 hybrid contribution -0.567 -1.152 -0.324 1.325 sum -4.117 11.062 11.676 16.602 Atomic orbital electron populations 1.22497 0.72437 1.06912 1.05792 1.46394 1.10890 1.05655 1.52441 1.27273 0.86204 0.96621 1.02515 1.74111 1.20882 1.03177 1.20862 1.74145 1.19175 1.04208 1.20551 1.24872 0.87088 0.93251 1.03875 1.20252 1.02357 0.84421 0.91365 1.60599 1.38362 1.21515 1.11676 1.21838 0.99348 0.85175 0.97937 1.18923 0.94934 0.94868 0.91984 1.21591 1.46096 0.97652 0.92853 0.91650 1.25981 0.95406 1.03096 0.95285 1.70109 1.50345 1.38861 0.98083 0.85471 0.79277 0.79028 0.77078 1.18839 1.21107 1.19245 0.87669 0.89153 0.86270 0.71955 0.91837 0.86879 0.84580 0.95663 0.90650 0.98495 0.99606 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.74 10.89 127.77 1.39 2.13 16 2 N -0.46 -9.77 3.15 -542.07 -1.71 -11.48 16 3 C 0.16 3.42 12.74 180.11 2.30 5.71 16 4 N -0.35 -11.13 12.21 -59.99 -0.73 -11.86 16 5 N -0.34 -11.85 12.21 -50.16 -0.61 -12.47 16 6 C 0.18 5.11 7.54 137.98 1.04 6.15 16 7 C 0.15 3.98 5.86 85.56 0.50 4.48 16 8 N -0.69 -23.63 6.49 -517.95 -3.36 -26.99 16 9 C 0.09 3.36 5.62 86.30 0.49 3.85 16 10 C 0.03 1.59 5.23 29.85 0.16 1.74 16 11 C -0.54 -30.31 9.11 25.60 0.23 -30.08 16 12 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 13 C 0.00 0.01 5.46 84.65 0.46 0.47 16 14 N -0.93 -56.91 13.29 21.44 0.28 -56.63 16 15 Si 0.97 43.57 29.54 68.60 2.03 45.60 16 16 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 17 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 18 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 19 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 20 H 0.09 1.32 7.81 -2.39 -0.02 1.30 16 21 H 0.12 0.71 8.14 -2.38 -0.02 0.69 16 22 H 0.26 2.41 8.06 -2.91 -0.02 2.39 16 23 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.11 2.43 7.86 -2.39 -0.02 2.41 16 25 H 0.34 12.60 8.72 -89.69 -0.78 11.81 16 26 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.08 2.76 8.14 -2.38 -0.02 2.74 16 28 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 29 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 30 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -74.20 266.16 2.81 -71.39 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: 0.35 Total: 7.97 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: 6.57 Total: -5.53 kcal Atomic # 7 Polarization: -113.29 SS G_CDS: -6.13 Total: -119.42 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -74.20 2.81 -71.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050418116.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.538 kcal (2) G-P(sol) polarization free energy of solvation -74.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds